Wall clock time and date at job start Tue Mar 31 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46773 * 2 1 4 4 N 1.46499 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99991 * 266.75473 * 4 3 2 6 6 H 1.08003 * 119.99898 * 325.86087 * 5 4 3 7 7 C 1.38810 * 120.00279 * 145.85611 * 5 4 3 8 8 N 1.31615 * 120.00621 * 155.67566 * 7 5 4 9 9 Si 1.86808 * 119.99817 * 335.67871 * 7 5 4 10 10 H 1.48496 * 109.47000 * 95.70471 * 9 7 5 11 11 H 1.48504 * 109.47019 * 215.70708 * 9 7 5 12 12 H 1.48504 * 109.47027 * 335.70460 * 9 7 5 13 13 C 1.46504 * 120.00187 * 86.75515 * 4 3 2 14 14 C 1.50693 * 109.47135 * 90.00197 * 13 4 3 15 15 O 1.21284 * 120.00084 * 359.97438 * 14 13 4 16 16 N 1.34775 * 120.00291 * 180.02562 * 14 13 4 17 17 C 1.39249 * 120.00588 * 184.76441 * 16 14 13 18 18 C 1.38854 * 120.16760 * 26.73152 * 17 16 14 19 19 C 1.38022 * 120.07497 * 180.02562 * 18 17 16 20 20 C 1.38579 * 120.41271 * 0.02562 * 19 18 17 21 21 C 1.37771 * 120.34596 * 359.97438 * 20 19 18 22 22 C 1.39752 * 119.91310 * 359.97438 * 21 20 19 23 23 C 1.47385 * 120.20440 * 180.02562 * 22 21 20 24 24 O 1.21507 * 119.99626 * 185.73025 * 23 22 21 25 25 O 1.34756 * 119.99729 * 5.73374 * 23 22 21 26 26 C 1.45204 * 116.99581 * 179.97438 * 25 23 22 27 27 C 1.52997 * 109.47094 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.46681 * 59.99736 * 1 2 3 29 29 H 1.09003 * 109.46452 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47146 * 299.99769 * 1 2 3 31 31 H 1.08998 * 109.47146 * 240.00231 * 2 1 3 32 32 H 1.08994 * 109.46868 * 120.00074 * 2 1 3 33 33 H 1.09008 * 109.47204 * 60.00197 * 3 2 1 34 34 H 1.09000 * 109.48064 * 300.00034 * 3 2 1 35 35 H 0.96995 * 120.00572 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46855 * 329.99749 * 13 4 3 37 37 H 1.09001 * 109.46798 * 210.00085 * 13 4 3 38 38 H 0.97002 * 119.99741 * 4.76149 * 16 14 13 39 39 H 1.07994 * 119.96092 * 0.30869 * 18 17 16 40 40 H 1.07997 * 119.78953 * 179.97438 * 19 18 17 41 41 H 1.08008 * 119.82307 * 179.97438 * 20 19 18 42 42 H 1.07998 * 120.04700 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.46891 * 299.99855 * 26 25 23 44 44 H 1.09004 * 109.47217 * 59.99822 * 26 25 23 45 45 H 1.09004 * 109.46853 * 60.00066 * 27 26 25 46 46 H 1.08991 * 109.47493 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.47265 * 300.00680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.5096 1.1831 6 1 3.7900 2.0819 2.0070 7 6 5.3989 0.8419 1.3242 8 7 6.2780 1.2529 2.2133 9 14 5.7779 -0.6402 0.2521 10 1 6.5758 -0.2093 -0.9239 11 1 6.5518 -1.6347 1.0379 12 1 4.5074 -1.2548 -0.2100 13 6 4.2370 1.3710 -1.2676 14 6 4.4879 2.7649 -1.7822 15 8 4.0937 3.7238 -1.1529 16 7 5.1495 2.9461 -2.9424 17 6 5.4686 4.2328 -3.3684 18 6 5.6329 5.2540 -2.4420 19 6 5.9486 6.5288 -2.8665 20 6 6.1035 6.8005 -4.2165 21 6 5.9444 5.8002 -5.1505 22 6 5.6257 4.5041 -4.7362 23 6 5.4546 3.4291 -5.7298 24 8 5.0763 2.3298 -5.3764 25 8 5.7179 3.6654 -7.0301 26 6 5.5278 2.5601 -7.9525 27 6 5.8729 3.0153 -9.3719 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6767 1.9565 -0.8899 35 1 7.1228 0.7865 2.3116 36 1 3.6477 0.8150 -1.9968 37 1 5.1895 0.8654 -1.1088 38 1 5.4035 2.1801 -3.4805 39 1 5.5180 5.0495 -1.3878 40 1 6.0749 7.3197 -2.1420 41 1 6.3501 7.8016 -4.5382 42 1 6.0666 6.0172 -6.2014 43 1 6.1783 1.7332 -7.6675 44 1 4.4885 2.2332 -7.9187 45 1 6.9121 3.3424 -9.4059 46 1 5.7307 2.1856 -10.0642 47 1 5.2223 3.8422 -9.6565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350648785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:51 Heat of formation + Delta-G solvation = -82.873356 kcal Electronic energy + Delta-G solvation = -29316.311420 eV Core-core repulsion = 25271.689938 eV Total energy + Delta-G solvation = -4044.621481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16521 -41.05742 -39.48131 -37.87523 -37.73399 -35.69541 -34.66786 -33.26139 -33.09636 -31.92330 -31.17607 -28.86815 -27.60349 -25.78082 -24.53569 -23.94503 -23.43661 -22.24646 -21.95077 -21.32897 -19.37544 -19.06004 -18.41947 -18.24773 -17.79948 -17.62386 -17.37008 -16.42647 -16.20865 -15.83373 -15.63942 -15.47010 -15.25167 -15.20239 -14.86645 -14.56088 -14.45811 -14.23686 -14.11513 -13.84141 -13.62016 -13.40690 -13.10028 -12.94272 -12.89117 -12.61224 -12.52317 -12.48450 -12.35421 -12.21794 -12.13078 -11.77628 -11.61275 -11.55487 -11.42760 -11.40500 -10.93245 -10.62753 -10.11479 -9.19321 -8.96790 -8.24962 -5.60333 -0.42635 0.27844 1.21120 1.36309 1.40505 1.46772 1.52645 1.64850 1.97509 2.34928 2.76326 2.95927 3.25131 3.55026 3.75559 3.82840 4.01910 4.07654 4.07724 4.16438 4.21157 4.24349 4.33318 4.34054 4.37583 4.42892 4.43825 4.60951 4.71578 4.81675 4.89148 4.91580 4.94387 5.08969 5.12267 5.14248 5.23085 5.24745 5.34749 5.37315 5.44419 5.48526 5.54649 5.84197 5.90442 6.11761 6.35439 6.57560 6.82538 7.12858 7.52034 7.91556 8.95049 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.003617 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.861868 B = 7739.059742 C = 8373.167826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.153 3.847 4 N -0.589 5.589 5 C -0.253 4.253 6 H 0.037 0.963 7 C -0.022 4.022 8 N -0.943 5.943 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.302 1.302 12 H -0.242 1.242 13 C 0.116 3.884 14 C 0.484 3.516 15 O -0.530 6.530 16 N -0.668 5.668 17 C 0.201 3.799 18 C -0.176 4.176 19 C -0.053 4.053 20 C -0.147 4.147 21 C -0.030 4.030 22 C -0.189 4.189 23 C 0.519 3.481 24 O -0.538 6.538 25 O -0.346 6.346 26 C 0.052 3.948 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.421 0.579 39 H 0.117 0.883 40 H 0.153 0.847 41 H 0.174 0.826 42 H 0.170 0.830 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 6.052 -24.652 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.028 3.972 4 N -0.309 5.309 5 C -0.383 4.383 6 H 0.054 0.946 7 C -0.218 4.218 8 N -0.587 5.587 9 Si 0.756 3.244 10 H -0.198 1.198 11 H -0.230 1.230 12 H -0.166 1.166 13 C -0.014 4.014 14 C 0.271 3.729 15 O -0.405 6.405 16 N -0.319 5.319 17 C 0.103 3.897 18 C -0.197 4.197 19 C -0.072 4.072 20 C -0.165 4.165 21 C -0.048 4.048 22 C -0.193 4.193 23 C 0.367 3.633 24 O -0.431 6.431 25 O -0.262 6.262 26 C -0.021 4.021 27 C -0.202 4.202 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.265 0.735 39 H 0.134 0.866 40 H 0.171 0.829 41 H 0.191 0.809 42 H 0.187 0.813 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.704 6.243 -23.987 24.845 hybrid contribution 0.658 -1.289 0.308 1.479 sum -1.046 4.954 -23.679 24.215 Atomic orbital electron populations 1.21656 0.93886 1.02151 1.01988 1.22006 0.96742 0.97898 1.01144 1.21048 0.81072 0.95455 0.99619 1.43853 1.02159 1.84729 1.00125 1.18593 1.03631 1.24526 0.91546 0.94550 1.26003 0.96311 1.00590 0.98932 1.70036 1.07638 1.40820 1.40168 0.86080 0.79033 0.81136 0.78142 1.19845 1.22967 1.16551 1.21457 0.98823 0.91305 0.89845 1.23168 0.75921 0.94784 0.79052 1.90575 1.49778 1.43305 1.56834 1.44313 1.55869 1.08014 1.23691 1.18153 0.93729 0.86042 0.91780 1.21362 1.04420 0.94176 0.99706 1.21661 0.92552 0.95100 0.97856 1.21500 1.02296 1.01231 0.91503 1.21612 0.91964 0.89191 1.02044 1.18921 1.16595 0.95169 0.88652 1.21063 0.72994 0.86761 0.82477 1.90654 1.45247 1.26459 1.80690 1.86535 1.79294 1.43549 1.16834 1.23375 1.02250 0.87451 0.89040 1.21822 1.03333 1.03635 0.91365 0.92009 0.91673 0.92815 0.92571 0.93686 0.93895 0.93138 0.92701 0.87205 0.90974 0.73521 0.86556 0.82948 0.80902 0.81257 0.91219 0.91271 0.91044 0.88233 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.02 16 2 C -0.14 -4.88 6.26 30.60 0.19 -4.69 16 3 C 0.15 6.37 5.67 86.38 0.49 6.86 16 4 N -0.59 -29.13 1.62 -706.35 -1.15 -30.28 16 5 C -0.25 -14.99 9.92 84.03 0.83 -14.15 16 6 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 7 C -0.02 -1.30 5.29 84.86 0.45 -0.85 16 8 N -0.94 -60.25 13.97 21.65 0.30 -59.95 16 9 Si 0.93 45.06 25.02 68.60 1.72 46.78 16 10 H -0.27 -12.38 6.65 99.48 0.66 -11.71 16 11 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.24 -10.85 7.11 99.48 0.71 -10.15 16 13 C 0.12 5.13 5.03 85.63 0.43 5.56 16 14 C 0.48 21.71 7.69 87.66 0.67 22.39 16 15 O -0.53 -27.08 13.67 -3.04 -0.04 -27.12 16 16 N -0.67 -25.60 4.81 -302.93 -1.46 -27.05 16 17 C 0.20 7.02 6.41 38.62 0.25 7.26 16 18 C -0.18 -6.15 8.68 22.37 0.19 -5.95 16 19 C -0.05 -1.30 10.03 22.30 0.22 -1.08 16 20 C -0.15 -2.64 10.02 22.24 0.22 -2.41 16 21 C -0.03 -0.59 9.61 22.53 0.22 -0.37 16 22 C -0.19 -5.23 5.89 -20.00 -0.12 -5.35 16 23 C 0.52 14.06 7.87 70.23 0.55 14.61 16 24 O -0.54 -16.95 13.63 19.81 0.27 -16.68 16 25 O -0.35 -7.22 9.49 -56.67 -0.54 -7.75 16 26 C 0.05 0.84 6.20 71.98 0.45 1.28 16 27 C -0.14 -1.32 10.29 71.98 0.74 -0.58 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.88 8.01 -2.38 -0.02 1.86 16 34 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 35 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.11 4.05 8.07 -2.39 -0.02 4.03 16 37 H 0.07 3.38 2.97 -2.39 -0.01 3.37 16 38 H 0.42 14.97 6.10 -92.71 -0.57 14.41 16 39 H 0.12 5.04 5.91 -2.91 -0.02 5.02 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.17 2.22 7.62 -2.91 -0.02 2.20 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -77.62 388.52 5.98 -71.64 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.37 Total: 30.93 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.51 Total: 19.49 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -2.30 Total: -117.29 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.31 Total: -51.56 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.72 Total: 46.78 kcal Total: -77.62 5.98 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350648785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.236 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds