Wall clock time and date at job start Tue Mar 31 2020 17:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 C 1.52997 * 109.47059 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.46953 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54054 * 68.37673 * 5 4 3 7 7 O 1.42100 * 110.54756 * 291.62414 * 5 4 3 8 8 N 1.65599 * 104.44985 * 179.97438 * 5 4 3 9 9 C 1.46507 * 120.00215 * 270.00225 * 8 5 4 10 10 C 1.50691 * 109.46974 * 264.99946 * 9 8 5 11 11 H 1.08003 * 120.00383 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99786 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00129 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46912 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47263 * 119.99692 * 14 12 10 17 17 H 1.48499 * 109.47214 * 239.99814 * 14 12 10 18 18 C 1.46507 * 119.99953 * 90.00067 * 8 5 4 19 19 C 1.53002 * 109.46871 * 265.00013 * 18 8 5 20 20 N 1.46908 * 109.46707 * 179.97438 * 19 18 8 21 21 C 1.47024 * 110.99261 * 46.32476 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00016 * 20 19 18 26 26 H 1.08998 * 109.46649 * 300.00375 * 1 2 3 27 27 H 1.08997 * 109.47109 * 60.00181 * 1 2 3 28 28 H 1.08998 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46902 * 239.99152 * 2 1 3 30 30 H 1.09007 * 109.47136 * 119.99876 * 2 1 3 31 31 H 1.08995 * 109.47391 * 59.99451 * 3 2 1 32 32 H 1.09008 * 109.46687 * 299.99512 * 3 2 1 33 33 H 1.09007 * 109.47295 * 59.99866 * 4 3 2 34 34 H 1.08997 * 109.47212 * 299.99746 * 4 3 2 35 35 H 1.08996 * 109.46527 * 25.00071 * 9 8 5 36 36 H 1.09002 * 109.47196 * 144.99713 * 9 8 5 37 37 H 0.97004 * 120.00513 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46696 * 145.00132 * 18 8 5 39 39 H 1.08999 * 109.46956 * 24.99978 * 18 8 5 40 40 H 1.09003 * 109.46906 * 60.00255 * 19 18 8 41 41 H 1.08999 * 109.47302 * 299.99754 * 19 18 8 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8791 3.7866 1.2356 7 8 3.8782 3.7860 -1.2384 8 7 5.8244 3.0077 -0.0013 9 6 6.5541 2.9441 1.2674 10 6 7.0350 4.3228 1.6399 11 1 6.8191 5.1624 0.9958 12 6 7.7516 4.5122 2.8025 13 7 8.0150 3.4897 3.5866 14 14 8.3485 6.2211 3.2640 15 1 7.9251 7.1913 2.2224 16 1 7.7651 6.6127 4.5722 17 1 9.8301 6.2178 3.3639 18 6 6.5541 2.9430 -1.2701 19 6 6.7907 1.4795 -1.6482 20 7 7.5219 1.4147 -2.9208 21 6 8.6563 2.3499 -2.9247 22 6 9.3531 2.2925 -4.2867 23 8 9.7584 0.9473 -4.5539 24 6 8.6778 0.0106 -4.5585 25 6 7.9748 0.0439 -3.1989 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9331 0.9287 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 5.8936 2.5665 2.0479 36 1 7.4097 2.2771 1.1615 37 1 8.5195 3.6228 4.4044 38 1 7.5129 3.4505 -1.1640 39 1 5.9695 3.4300 -2.0506 40 1 5.8319 0.9720 -1.7543 41 1 7.3753 0.9925 -0.8677 42 1 9.3618 2.0687 -2.1428 43 1 8.2951 3.3621 -2.7431 44 1 10.2291 2.9411 -4.2750 45 1 8.6638 2.6259 -5.0626 46 1 7.9683 0.2772 -5.3418 47 1 9.0653 -0.9912 -4.7440 48 1 7.1156 -0.6266 -3.2168 49 1 8.6697 -0.2745 -2.4219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354460133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:21 Heat of formation + Delta-G solvation = -119.232558 kcal Electronic energy + Delta-G solvation = -28497.197075 eV Core-core repulsion = 24586.442891 eV Total energy + Delta-G solvation = -3910.754183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.62832 -36.87175 -36.46705 -35.82444 -35.31378 -34.89845 -32.53760 -31.28705 -30.48460 -29.53885 -27.16572 -25.56452 -24.33283 -24.07507 -22.78150 -21.75661 -21.13155 -20.16126 -18.20195 -17.18663 -16.58884 -16.52614 -16.14899 -16.04126 -15.74383 -15.39502 -15.14732 -14.96006 -14.73053 -14.46318 -14.16976 -13.93942 -13.52813 -13.34126 -12.93367 -12.82860 -12.65782 -12.38835 -12.13040 -11.88405 -11.77071 -11.60878 -11.50783 -11.44695 -11.43711 -11.37141 -11.35526 -11.06891 -10.85046 -10.76959 -10.68123 -10.55075 -10.41196 -10.16569 -9.99966 -9.78692 -9.65472 -8.46965 -8.38464 -8.09907 -6.08596 -4.11678 0.80217 3.22437 3.29939 3.37945 3.43898 3.73405 3.88663 4.33601 4.42841 4.53048 4.67169 4.78412 4.85600 4.87819 4.93869 4.97740 5.09237 5.18126 5.22225 5.26878 5.30890 5.34246 5.42100 5.46233 5.48478 5.55674 5.60006 5.64389 5.71370 5.73692 5.77548 5.86049 5.88485 5.91373 6.00196 6.04481 6.14902 6.30002 6.43037 6.92223 6.94794 7.06579 7.14126 7.32784 7.53801 7.89370 8.18133 8.91173 9.53551 11.00206 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006246 B = 0.005527 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4481.652402 B = 5064.881752 C = 8687.264216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.111 4.111 4 C -0.643 4.643 5 S 2.602 3.398 6 O -0.936 6.936 7 O -0.971 6.971 8 N -0.983 5.983 9 C 0.256 3.744 10 C -0.523 4.523 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.284 1.284 18 C 0.118 3.882 19 C 0.032 3.968 20 N -0.533 5.533 21 C 0.007 3.993 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.016 3.984 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -9.776 -13.046 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.770 4.770 5 S 2.693 3.307 6 O -0.926 6.926 7 O -0.962 6.962 8 N -0.821 5.821 9 C 0.134 3.866 10 C -0.562 4.562 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.009 4.009 19 C -0.097 4.097 20 N -0.259 5.259 21 C -0.121 4.121 22 C -0.013 4.013 23 O -0.307 6.307 24 C -0.012 4.012 25 C -0.112 4.112 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.113 0.887 48 H 0.102 0.898 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.795 -8.930 -13.259 17.004 hybrid contribution 0.834 -0.176 1.243 1.507 sum -4.961 -9.106 -12.016 15.872 Atomic orbital electron populations 1.21818 0.95705 1.01708 1.02136 1.21479 0.95801 0.95718 1.02460 1.21323 0.90951 0.99351 1.03377 1.30891 1.06036 1.28982 1.11060 1.05249 0.73956 0.77176 0.74269 1.93634 1.83354 1.71318 1.44325 1.93515 1.84200 1.72522 1.45944 1.57457 1.23247 1.88570 1.12796 1.19079 0.92088 0.97900 0.77510 1.21493 1.33980 0.94091 1.06653 0.91990 1.24921 0.95965 0.97168 0.95979 1.69920 1.40294 1.30108 1.13375 0.86469 0.78116 0.84370 0.78674 1.19590 1.20810 1.21037 1.21315 0.99551 0.94371 0.85661 1.22726 0.98363 0.99306 0.89315 1.62264 1.24266 1.05937 1.33424 1.22957 0.92509 0.98752 0.97895 1.22704 0.99510 0.83546 0.95520 1.87966 1.33072 1.17617 1.92052 1.22629 0.89333 0.93343 0.95876 1.22790 0.99610 0.90864 0.97947 0.92449 0.92557 0.92630 0.91754 0.91558 0.90424 0.90668 0.85756 0.85142 0.94372 0.94865 0.92775 0.89275 0.89165 0.91177 0.93438 0.93307 0.88389 0.88445 0.92274 0.92361 0.88742 0.89817 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.11 -1.35 5.22 -26.73 -0.14 -1.49 16 4 C -0.64 -8.59 6.18 37.16 0.23 -8.36 16 5 S 2.60 48.50 5.37 -107.50 -0.58 47.92 16 6 O -0.94 -21.57 16.98 -57.54 -0.98 -22.55 16 7 O -0.97 -19.33 16.53 -57.54 -0.95 -20.28 16 8 N -0.98 -19.29 2.70 -115.66 -0.31 -19.60 16 9 C 0.26 6.13 5.01 -5.19 -0.03 6.11 16 10 C -0.52 -14.36 9.38 -34.44 -0.32 -14.68 16 11 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 14 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.12 1.99 4.92 -4.04 -0.02 1.97 16 19 C 0.03 0.46 5.60 -3.82 -0.02 0.44 16 20 N -0.53 -6.89 4.88 -234.29 -1.14 -8.03 16 21 C 0.01 0.09 4.94 -3.70 -0.02 0.07 16 22 C 0.06 0.72 7.01 37.21 0.26 0.98 16 23 O -0.39 -4.81 10.83 -35.23 -0.38 -5.20 16 24 C 0.07 0.66 7.01 37.21 0.26 0.92 16 25 C 0.02 0.18 5.63 -3.71 -0.02 0.16 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.12 1.39 6.96 -51.92 -0.36 1.03 16 34 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.04 0.97 7.61 -51.93 -0.39 0.57 16 36 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.09 1.55 6.25 -51.93 -0.32 1.23 16 39 H 0.09 1.50 6.82 -51.93 -0.35 1.14 16 40 H 0.07 0.88 6.96 -51.93 -0.36 0.52 16 41 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.24 6.05 -51.93 -0.31 0.93 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -33.54 398.72 -11.16 -44.70 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.84 Total: -0.01 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 0.29 Total: -14.57 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.72 Total: -52.69 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -2.31 Total: -48.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.58 Total: 47.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.54 -11.16 -44.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354460133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.533 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds