Wall clock time and date at job start Tue Mar 31 2020 17:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 C 1.52997 * 109.47059 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.46953 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54054 * 68.37673 * 5 4 3 7 7 O 1.42100 * 110.54756 * 291.62414 * 5 4 3 8 8 N 1.65599 * 104.44985 * 179.97438 * 5 4 3 9 9 C 1.46507 * 120.00215 * 270.00225 * 8 5 4 10 10 C 1.50691 * 109.46974 * 264.99946 * 9 8 5 11 11 H 1.08003 * 120.00383 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99786 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00129 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46912 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47263 * 119.99692 * 14 12 10 17 17 H 1.48499 * 109.47214 * 239.99814 * 14 12 10 18 18 C 1.46507 * 119.99953 * 90.00067 * 8 5 4 19 19 C 1.53002 * 109.46871 * 265.00013 * 18 8 5 20 20 N 1.46908 * 109.46707 * 179.97438 * 19 18 8 21 21 C 1.47024 * 110.99261 * 46.32476 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00016 * 20 19 18 26 26 H 1.08998 * 109.46649 * 300.00375 * 1 2 3 27 27 H 1.08997 * 109.47109 * 60.00181 * 1 2 3 28 28 H 1.08998 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46902 * 239.99152 * 2 1 3 30 30 H 1.09007 * 109.47136 * 119.99876 * 2 1 3 31 31 H 1.08995 * 109.47391 * 59.99451 * 3 2 1 32 32 H 1.09008 * 109.46687 * 299.99512 * 3 2 1 33 33 H 1.09007 * 109.47295 * 59.99866 * 4 3 2 34 34 H 1.08997 * 109.47212 * 299.99746 * 4 3 2 35 35 H 1.08996 * 109.46527 * 25.00071 * 9 8 5 36 36 H 1.09002 * 109.47196 * 144.99713 * 9 8 5 37 37 H 0.97004 * 120.00513 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46696 * 145.00132 * 18 8 5 39 39 H 1.08999 * 109.46956 * 24.99978 * 18 8 5 40 40 H 1.09003 * 109.46906 * 60.00255 * 19 18 8 41 41 H 1.08999 * 109.47302 * 299.99754 * 19 18 8 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8791 3.7866 1.2356 7 8 3.8782 3.7860 -1.2384 8 7 5.8244 3.0077 -0.0013 9 6 6.5541 2.9441 1.2674 10 6 7.0350 4.3228 1.6399 11 1 6.8191 5.1624 0.9958 12 6 7.7516 4.5122 2.8025 13 7 8.0150 3.4897 3.5866 14 14 8.3485 6.2211 3.2640 15 1 7.9251 7.1913 2.2224 16 1 7.7651 6.6127 4.5722 17 1 9.8301 6.2178 3.3639 18 6 6.5541 2.9430 -1.2701 19 6 6.7907 1.4795 -1.6482 20 7 7.5219 1.4147 -2.9208 21 6 8.6563 2.3499 -2.9247 22 6 9.3531 2.2925 -4.2867 23 8 9.7584 0.9473 -4.5539 24 6 8.6778 0.0106 -4.5585 25 6 7.9748 0.0439 -3.1989 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9331 0.9287 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 5.8936 2.5665 2.0479 36 1 7.4097 2.2771 1.1615 37 1 8.5195 3.6228 4.4044 38 1 7.5129 3.4505 -1.1640 39 1 5.9695 3.4300 -2.0506 40 1 5.8319 0.9720 -1.7543 41 1 7.3753 0.9925 -0.8677 42 1 9.3618 2.0687 -2.1428 43 1 8.2951 3.3621 -2.7431 44 1 10.2291 2.9411 -4.2750 45 1 8.6638 2.6259 -5.0626 46 1 7.9683 0.2772 -5.3418 47 1 9.0653 -0.9912 -4.7440 48 1 7.1156 -0.6266 -3.2168 49 1 8.6697 -0.2745 -2.4219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354460133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:21 Heat of formation + Delta-G solvation = -144.191006 kcal Electronic energy + Delta-G solvation = -28498.279354 eV Core-core repulsion = 24586.442891 eV Total energy + Delta-G solvation = -3911.836463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.58431 -38.21419 -38.01326 -36.93312 -36.68311 -36.26454 -34.52631 -32.19335 -31.41504 -30.89080 -28.79984 -26.90038 -25.30977 -25.00070 -24.57215 -22.87783 -22.06163 -21.17994 -19.74054 -18.75982 -18.40483 -17.79052 -17.28837 -17.22559 -17.01457 -16.65416 -16.25307 -16.09115 -15.95620 -15.76929 -15.37107 -14.94170 -14.71230 -14.51283 -14.34445 -14.11492 -13.85852 -13.73176 -13.52453 -13.19997 -13.08796 -13.06248 -12.93621 -12.83274 -12.64863 -12.48462 -12.41108 -12.31816 -12.30210 -12.19500 -12.13057 -11.74794 -11.71780 -11.54879 -11.42592 -11.30700 -10.65946 -10.59990 -9.75137 -9.42570 -8.21495 -6.31577 -0.64739 1.35894 1.38765 1.49908 1.75226 2.39755 2.75057 2.97150 3.01055 3.10034 3.25985 3.55851 3.74231 3.84619 3.91504 4.01251 4.04430 4.07962 4.23222 4.26717 4.29607 4.40307 4.46050 4.46958 4.57145 4.58329 4.64301 4.71695 4.75627 4.85004 4.85889 4.88336 4.97221 4.99978 5.03609 5.06221 5.18915 5.19519 5.29029 5.43874 5.45457 5.65680 5.82111 5.94351 5.97597 6.11774 6.20928 6.76168 7.36781 8.86113 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006246 B = 0.005527 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4481.652402 B = 5064.881752 C = 8687.264216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.123 4.123 4 C -0.606 4.606 5 S 2.592 3.408 6 O -0.992 6.992 7 O -0.991 6.991 8 N -0.990 5.990 9 C 0.273 3.727 10 C -0.542 4.542 11 H 0.048 0.952 12 C 0.014 3.986 13 N -0.924 5.924 14 Si 0.952 3.048 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.271 1.271 18 C 0.117 3.883 19 C 0.041 3.959 20 N -0.534 5.534 21 C 0.005 3.995 22 C 0.068 3.932 23 O -0.406 6.406 24 C 0.063 3.937 25 C 0.015 3.985 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.022 0.978 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.035 0.965 42 H 0.030 0.970 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.117 0.883 48 H 0.105 0.895 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 -11.494 -14.542 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.162 4.162 4 C -0.739 4.739 5 S 2.690 3.310 6 O -0.983 6.983 7 O -0.981 6.981 8 N -0.827 5.827 9 C 0.150 3.850 10 C -0.581 4.581 11 H 0.066 0.934 12 C -0.186 4.186 13 N -0.565 5.565 14 Si 0.777 3.223 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.196 1.196 18 C -0.009 4.009 19 C -0.088 4.088 20 N -0.260 5.260 21 C -0.123 4.123 22 C -0.009 4.009 23 O -0.325 6.325 24 C -0.013 4.013 25 C -0.113 4.113 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.110 0.890 44 H 0.127 0.873 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.135 0.865 48 H 0.124 0.876 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.431 -10.592 -14.781 19.288 hybrid contribution 0.954 0.293 1.651 1.929 sum -5.477 -10.299 -13.130 17.563 Atomic orbital electron populations 1.21843 0.94829 1.02683 1.02236 1.21496 0.96599 0.93750 1.03402 1.21540 0.89541 1.01408 1.03693 1.30546 1.07074 1.22784 1.13480 1.05286 0.73400 0.79418 0.72865 1.93564 1.83848 1.74542 1.46311 1.93480 1.84071 1.74690 1.45881 1.57259 1.23739 1.89457 1.12199 1.18593 0.91630 0.95826 0.78977 1.21822 1.34160 0.95354 1.06753 0.93374 1.25669 0.96213 1.00636 0.96037 1.69994 1.40949 1.31730 1.13784 0.85605 0.78289 0.80236 0.78182 1.19637 1.20500 1.19583 1.21383 0.98560 0.96506 0.84461 1.22587 0.99514 0.97039 0.89691 1.62331 1.24268 1.07157 1.32211 1.22968 0.92306 0.98529 0.98525 1.22736 1.00070 0.83616 0.94502 1.87946 1.34376 1.18186 1.92009 1.22815 0.89094 0.94039 0.95365 1.22915 1.00352 0.89891 0.98192 0.92795 0.92147 0.91229 0.90235 0.91228 0.91030 0.89862 0.82396 0.83824 0.96041 0.95548 0.92455 0.90806 0.88937 0.88889 0.94644 0.95197 0.88962 0.87270 0.91363 0.91455 0.86520 0.87649 0.94929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.11 -1.89 5.93 30.60 0.18 -1.70 16 3 C -0.12 -2.68 5.22 30.59 0.16 -2.52 16 4 C -0.61 -14.76 6.18 71.98 0.44 -14.32 16 5 S 2.59 97.08 5.37 -56.49 -0.30 96.77 16 6 O -0.99 -47.36 16.98 -127.65 -2.17 -49.53 16 7 O -0.99 -39.41 16.53 -127.65 -2.11 -41.52 16 8 N -0.99 -39.58 2.70 -519.83 -1.40 -40.98 16 9 C 0.27 13.52 5.01 85.63 0.43 13.95 16 10 C -0.54 -30.72 9.38 25.60 0.24 -30.48 16 11 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 12 C 0.01 0.78 5.46 84.66 0.46 1.24 16 13 N -0.92 -54.01 13.29 21.45 0.28 -53.73 16 14 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 C 0.12 3.98 4.92 86.38 0.43 4.41 16 19 C 0.04 1.12 5.60 86.30 0.48 1.60 16 20 N -0.53 -13.10 4.88 -895.15 -4.36 -17.46 16 21 C 0.01 0.13 4.94 86.31 0.43 0.55 16 22 C 0.07 1.44 7.01 72.02 0.50 1.94 16 23 O -0.41 -9.43 10.83 -148.98 -1.61 -11.04 16 24 C 0.06 1.13 7.01 72.02 0.50 1.64 16 25 C 0.01 0.29 5.63 86.31 0.49 0.78 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.16 2.87 6.96 -2.39 -0.02 2.85 16 34 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.02 1.13 7.61 -2.39 -0.02 1.11 16 36 H 0.03 1.33 8.11 -2.39 -0.02 1.31 16 37 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.07 2.69 6.25 -2.39 -0.01 2.68 16 39 H 0.09 3.08 6.82 -2.39 -0.02 3.07 16 40 H 0.09 2.07 6.96 -2.39 -0.02 2.05 16 41 H 0.04 1.05 8.08 -2.39 -0.02 1.03 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 2.40 6.05 -2.39 -0.01 2.39 16 44 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -74.00 398.72 -3.29 -77.29 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.90 Total: 17.59 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 5.46 Total: -24.51 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -5.48 Total: -112.17 kcal Atomic # 8 Polarization: -96.20 SS G_CDS: -5.89 Total: -102.09 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 97.08 SS G_CDS: -0.30 Total: 96.77 kcal Total: -74.00 -3.29 -77.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354460133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.901 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds