Wall clock time and date at job start Tue Mar 31 2020 17:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47145 * 2 1 4 4 C 1.52997 * 109.46990 * 120.00122 * 2 1 3 5 5 S 1.81398 * 109.46953 * 174.99600 * 4 2 1 6 6 O 1.42105 * 110.54054 * 68.37673 * 5 4 2 7 7 O 1.42100 * 110.54756 * 291.62414 * 5 4 2 8 8 N 1.65599 * 104.44985 * 179.97438 * 5 4 2 9 9 C 1.46507 * 120.00215 * 270.00225 * 8 5 4 10 10 C 1.50691 * 109.46974 * 264.99946 * 9 8 5 11 11 H 1.08003 * 120.00383 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99786 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00214 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00219 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47151 * 89.99942 * 14 12 10 16 16 H 1.48501 * 109.47258 * 210.00426 * 14 12 10 17 17 H 1.48506 * 109.46756 * 330.00058 * 14 12 10 18 18 C 1.46507 * 119.99953 * 90.00067 * 8 5 4 19 19 C 1.53002 * 109.46871 * 265.00013 * 18 8 5 20 20 N 1.46908 * 109.46707 * 179.97438 * 19 18 8 21 21 C 1.47024 * 110.99261 * 46.32476 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00016 * 20 19 18 26 26 H 1.09000 * 109.47102 * 299.99990 * 1 2 3 27 27 H 1.09007 * 109.47424 * 60.00310 * 1 2 3 28 28 H 1.09005 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46838 * 239.99528 * 2 1 3 30 30 H 1.09003 * 109.47298 * 299.99696 * 3 2 1 31 31 H 1.09001 * 109.47637 * 60.00018 * 3 2 1 32 32 H 1.09003 * 109.46961 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47295 * 54.99996 * 4 2 1 34 34 H 1.08997 * 109.47212 * 294.99876 * 4 2 1 35 35 H 1.08996 * 109.46527 * 25.00071 * 9 8 5 36 36 H 1.09002 * 109.47196 * 144.99713 * 9 8 5 37 37 H 0.96996 * 120.00220 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.46696 * 145.00132 * 18 8 5 39 39 H 1.08999 * 109.46956 * 24.99978 * 18 8 5 40 40 H 1.09003 * 109.46906 * 60.00255 * 19 18 8 41 41 H 1.08999 * 109.47302 * 299.99754 * 19 18 8 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 16 3.8478 -0.8515 1.1765 6 8 4.4458 0.4306 1.3099 7 8 4.2425 -1.7397 0.1399 8 7 4.2616 -1.6417 2.5717 9 6 4.5489 -0.8780 3.7885 10 6 6.0347 -0.6525 3.9009 11 1 6.6986 -1.0398 3.1422 12 6 6.5466 0.0472 4.9730 13 7 7.8431 0.2444 5.0709 14 14 5.3984 0.7164 6.2857 15 1 5.2204 -0.3008 7.3529 16 1 5.9811 1.9508 6.8705 17 1 4.0808 1.0312 5.6772 18 6 4.3403 -3.1046 2.5894 19 6 3.0137 -3.6807 3.0884 20 7 3.0924 -5.1475 3.1055 21 6 4.3487 -5.6004 3.7205 22 6 4.4157 -7.1290 3.6647 23 8 3.2655 -7.6764 4.3148 24 6 2.0250 -7.2565 3.7402 25 6 1.9332 -5.7293 3.7976 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1584 2.1369 35 1 4.0379 0.0837 3.7429 36 1 4.1991 -1.4345 4.6580 37 1 8.2033 0.7364 5.8253 38 1 5.1453 -3.4170 3.2545 39 1 4.5390 -3.4699 1.5818 40 1 2.2087 -3.3681 2.4232 41 1 2.8150 -3.3154 4.0960 42 1 4.3838 -5.2722 4.7593 43 1 5.1938 -5.1790 3.1762 44 1 5.3179 -7.4724 4.1709 45 1 4.4356 -7.4547 2.6247 46 1 1.9749 -7.5853 2.7022 47 1 1.1981 -7.6927 4.3006 48 1 1.0156 -5.4011 3.3095 49 1 1.9293 -5.4038 4.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354493176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:24 Heat of formation + Delta-G solvation = -109.329883 kcal Electronic energy + Delta-G solvation = -28961.005793 eV Core-core repulsion = 25050.681022 eV Total energy + Delta-G solvation = -3910.324771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.67517 -36.97046 -36.61184 -36.37817 -35.37771 -34.99189 -32.48700 -31.33240 -29.79322 -27.86698 -27.62647 -27.25841 -25.64322 -24.13278 -22.50817 -21.65180 -20.58594 -20.13644 -18.27854 -17.35807 -16.98942 -16.58660 -16.24961 -16.17652 -15.79007 -15.19159 -15.14507 -14.92652 -14.72962 -14.32640 -14.25379 -14.00342 -13.55223 -13.24767 -13.05583 -12.72685 -12.56128 -12.42401 -12.28881 -12.22031 -12.13084 -11.85103 -11.62274 -11.53272 -11.46148 -11.37280 -11.23535 -11.07767 -10.95517 -10.90165 -10.67745 -10.60721 -10.43747 -10.23615 -10.07360 -9.77479 -9.55355 -8.62506 -8.44617 -8.18257 -6.10457 -4.09349 0.70725 3.11210 3.21575 3.28633 3.31848 3.68993 3.83593 4.25311 4.34703 4.42487 4.54590 4.73077 4.83442 4.85974 4.89790 4.93660 5.05112 5.12337 5.18962 5.26364 5.27927 5.35562 5.38910 5.45191 5.49808 5.52138 5.53419 5.63757 5.67865 5.69960 5.72850 5.79689 5.84931 5.92800 5.94666 6.09620 6.21005 6.27021 6.33176 6.62083 6.85270 6.87446 6.99394 7.03484 7.29110 7.54100 8.46689 8.95869 9.48303 11.03176 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007743 B = 0.005330 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.158449 B = 5252.292281 C = 7758.019863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.182 4.182 4 C -0.640 4.640 5 S 2.603 3.397 6 O -0.930 6.930 7 O -0.967 6.967 8 N -0.978 5.978 9 C 0.226 3.774 10 C -0.527 4.527 11 H 0.079 0.921 12 C 0.074 3.926 13 N -0.894 5.894 14 Si 0.870 3.130 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.116 3.884 19 C 0.032 3.968 20 N -0.532 5.532 21 C 0.006 3.994 22 C 0.064 3.936 23 O -0.388 6.388 24 C 0.065 3.935 25 C 0.016 3.984 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.035 0.965 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 -9.128 -5.360 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.239 4.239 4 C -0.767 4.767 5 S 2.694 3.306 6 O -0.920 6.920 7 O -0.957 6.957 8 N -0.815 5.815 9 C 0.103 3.897 10 C -0.566 4.566 11 H 0.097 0.903 12 C -0.129 4.129 13 N -0.532 5.532 14 Si 0.696 3.304 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.011 4.011 19 C -0.098 4.098 20 N -0.258 5.258 21 C -0.122 4.122 22 C -0.013 4.013 23 O -0.307 6.307 24 C -0.012 4.012 25 C -0.112 4.112 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.102 0.898 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.380 -9.011 -6.205 18.874 hybrid contribution -1.225 0.850 1.914 2.426 sum -16.605 -8.160 -4.291 18.993 Atomic orbital electron populations 1.21789 0.93834 1.01933 1.02094 1.20796 0.97875 0.96443 0.95083 1.22322 1.03469 0.95114 1.03011 1.30974 1.29752 1.09279 1.06727 1.05295 0.77068 0.74594 0.73612 1.93628 1.72578 1.40770 1.85060 1.93528 1.80484 1.65724 1.55974 1.57233 1.82301 1.13415 1.28557 1.19463 0.98136 0.90308 0.81789 1.21323 0.90329 1.35558 1.09351 0.90257 1.24853 0.94901 0.95417 0.97716 1.69886 1.11378 1.41068 1.30876 0.86964 0.81732 0.79249 0.82415 1.20163 1.20790 1.18998 1.21369 0.96372 0.79654 1.03721 1.22729 0.99740 0.86412 1.00895 1.62253 1.02072 1.08229 1.53274 1.22975 0.93650 0.96456 0.99105 1.22710 0.88603 0.91944 0.98030 1.87969 1.14217 1.70652 1.57858 1.22626 0.86797 0.92844 0.98927 1.22796 0.94682 0.96091 0.97641 0.92328 0.92202 0.92490 0.90057 0.91535 0.91491 0.90347 0.85639 0.85227 0.94746 0.95586 0.92521 0.88936 0.88836 0.91089 0.93651 0.93336 0.88231 0.88341 0.92196 0.92307 0.88738 0.89808 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.08 -0.98 2.92 -90.63 -0.26 -1.24 16 3 C -0.18 -2.29 8.88 37.15 0.33 -1.96 16 4 C -0.64 -8.25 5.62 37.16 0.21 -8.04 16 5 S 2.60 47.68 5.02 -107.50 -0.54 47.14 16 6 O -0.93 -20.64 14.73 -57.54 -0.85 -21.49 16 7 O -0.97 -19.24 16.53 -57.54 -0.95 -20.19 16 8 N -0.98 -18.74 2.70 -115.66 -0.31 -19.05 16 9 C 0.23 5.08 4.08 -5.19 -0.02 5.06 16 10 C -0.53 -14.62 9.94 -34.44 -0.34 -14.96 16 11 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 14 Si 0.87 20.70 27.47 -169.99 -4.67 16.04 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 18 C 0.12 1.91 4.92 -4.04 -0.02 1.89 16 19 C 0.03 0.43 5.60 -3.82 -0.02 0.41 16 20 N -0.53 -6.65 4.88 -234.29 -1.14 -7.80 16 21 C 0.01 0.08 4.94 -3.70 -0.02 0.06 16 22 C 0.06 0.71 7.01 37.21 0.26 0.97 16 23 O -0.39 -4.71 10.83 -35.23 -0.38 -5.10 16 24 C 0.07 0.64 7.01 37.21 0.26 0.90 16 25 C 0.02 0.17 5.63 -3.71 -0.02 0.15 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.17 5.61 -51.93 -0.29 0.88 16 33 H 0.13 1.33 6.96 -51.92 -0.36 0.97 16 34 H 0.13 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.03 0.77 6.66 -51.93 -0.35 0.43 16 36 H 0.03 0.55 7.54 -51.93 -0.39 0.16 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 1.60 6.25 -51.93 -0.32 1.28 16 39 H 0.09 1.54 6.82 -51.93 -0.35 1.19 16 40 H 0.07 0.84 6.96 -51.93 -0.36 0.48 16 41 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.26 6.05 -51.93 -0.31 0.94 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -34.27 389.35 -10.28 -44.55 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.67 Total: 2.12 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 0.60 Total: -15.71 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.68 Total: -53.22 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -2.18 Total: -46.78 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.04 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.54 Total: 47.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.27 -10.28 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354493176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.779 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds