Wall clock time and date at job start Tue Mar 31 2020 17:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47145 * 2 1 4 4 C 1.52997 * 109.46990 * 120.00122 * 2 1 3 5 5 S 1.81398 * 109.46953 * 174.99600 * 4 2 1 6 6 O 1.42105 * 110.54054 * 68.37673 * 5 4 2 7 7 O 1.42100 * 110.54756 * 291.62414 * 5 4 2 8 8 N 1.65599 * 104.44985 * 179.97438 * 5 4 2 9 9 C 1.46507 * 120.00215 * 270.00225 * 8 5 4 10 10 C 1.50691 * 109.46974 * 264.99946 * 9 8 5 11 11 H 1.08003 * 120.00383 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99786 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00214 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00219 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47151 * 89.99942 * 14 12 10 16 16 H 1.48501 * 109.47258 * 210.00426 * 14 12 10 17 17 H 1.48506 * 109.46756 * 330.00058 * 14 12 10 18 18 C 1.46507 * 119.99953 * 90.00067 * 8 5 4 19 19 C 1.53002 * 109.46871 * 265.00013 * 18 8 5 20 20 N 1.46908 * 109.46707 * 179.97438 * 19 18 8 21 21 C 1.47024 * 110.99261 * 46.32476 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00016 * 20 19 18 26 26 H 1.09000 * 109.47102 * 299.99990 * 1 2 3 27 27 H 1.09007 * 109.47424 * 60.00310 * 1 2 3 28 28 H 1.09005 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46838 * 239.99528 * 2 1 3 30 30 H 1.09003 * 109.47298 * 299.99696 * 3 2 1 31 31 H 1.09001 * 109.47637 * 60.00018 * 3 2 1 32 32 H 1.09003 * 109.46961 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47295 * 54.99996 * 4 2 1 34 34 H 1.08997 * 109.47212 * 294.99876 * 4 2 1 35 35 H 1.08996 * 109.46527 * 25.00071 * 9 8 5 36 36 H 1.09002 * 109.47196 * 144.99713 * 9 8 5 37 37 H 0.96996 * 120.00220 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.46696 * 145.00132 * 18 8 5 39 39 H 1.08999 * 109.46956 * 24.99978 * 18 8 5 40 40 H 1.09003 * 109.46906 * 60.00255 * 19 18 8 41 41 H 1.08999 * 109.47302 * 299.99754 * 19 18 8 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 16 3.8478 -0.8515 1.1765 6 8 4.4458 0.4306 1.3099 7 8 4.2425 -1.7397 0.1399 8 7 4.2616 -1.6417 2.5717 9 6 4.5489 -0.8780 3.7885 10 6 6.0347 -0.6525 3.9009 11 1 6.6986 -1.0398 3.1422 12 6 6.5466 0.0472 4.9730 13 7 7.8431 0.2444 5.0709 14 14 5.3984 0.7164 6.2857 15 1 5.2204 -0.3008 7.3529 16 1 5.9811 1.9508 6.8705 17 1 4.0808 1.0312 5.6772 18 6 4.3403 -3.1046 2.5894 19 6 3.0137 -3.6807 3.0884 20 7 3.0924 -5.1475 3.1055 21 6 4.3487 -5.6004 3.7205 22 6 4.4157 -7.1290 3.6647 23 8 3.2655 -7.6764 4.3148 24 6 2.0250 -7.2565 3.7402 25 6 1.9332 -5.7293 3.7976 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1584 2.1369 35 1 4.0379 0.0837 3.7429 36 1 4.1991 -1.4345 4.6580 37 1 8.2033 0.7364 5.8253 38 1 5.1453 -3.4170 3.2545 39 1 4.5390 -3.4699 1.5818 40 1 2.2087 -3.3681 2.4232 41 1 2.8150 -3.3154 4.0960 42 1 4.3838 -5.2722 4.7593 43 1 5.1938 -5.1790 3.1762 44 1 5.3179 -7.4724 4.1709 45 1 4.4356 -7.4547 2.6247 46 1 1.9749 -7.5853 2.7022 47 1 1.1981 -7.6927 4.3006 48 1 1.0156 -5.4011 3.3095 49 1 1.9293 -5.4038 4.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354493176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:23 Heat of formation + Delta-G solvation = -136.553102 kcal Electronic energy + Delta-G solvation = -28962.186281 eV Core-core repulsion = 25050.681022 eV Total energy + Delta-G solvation = -3911.505259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.59223 -38.26578 -38.07382 -37.39212 -36.83647 -36.28358 -34.52439 -32.20810 -31.18606 -29.20881 -28.84443 -28.09396 -26.87871 -25.02663 -24.20491 -22.90117 -21.50446 -21.11980 -19.75048 -19.08667 -18.68205 -17.81710 -17.46739 -17.24243 -16.95978 -16.34738 -16.12960 -16.02970 -15.90346 -15.73817 -15.42847 -15.15099 -14.72346 -14.51026 -14.26928 -14.20735 -14.01319 -13.71153 -13.41963 -13.23669 -13.14245 -13.06783 -13.03246 -12.94272 -12.79460 -12.50030 -12.43280 -12.29790 -12.21249 -12.03101 -12.01307 -11.80603 -11.77566 -11.71434 -11.43727 -11.27398 -10.77796 -10.66281 -9.75604 -9.41317 -8.28756 -6.33797 -0.68243 1.33265 1.37932 1.46693 1.71684 2.33892 2.74468 2.97070 3.00526 3.05100 3.22271 3.47526 3.70352 3.78243 3.89158 3.98560 4.02200 4.06508 4.21720 4.27307 4.31164 4.38874 4.41975 4.47743 4.52478 4.60162 4.65253 4.75603 4.76648 4.80023 4.82620 4.85565 4.86823 4.94987 5.00022 5.05202 5.05820 5.15462 5.29282 5.33356 5.37453 5.48508 5.65245 5.91489 5.96467 6.20603 6.31004 6.69153 7.28296 8.89264 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007743 B = 0.005330 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.158449 B = 5252.292281 C = 7758.019863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.191 4.191 4 C -0.601 4.601 5 S 2.585 3.415 6 O -0.984 6.984 7 O -0.997 6.997 8 N -0.987 5.987 9 C 0.235 3.765 10 C -0.536 4.536 11 H 0.024 0.976 12 C 0.006 3.994 13 N -0.950 5.950 14 Si 0.942 3.058 15 H -0.258 1.258 16 H -0.285 1.285 17 H -0.234 1.234 18 C 0.114 3.886 19 C 0.041 3.959 20 N -0.536 5.536 21 C 0.005 3.995 22 C 0.067 3.933 23 O -0.406 6.406 24 C 0.062 3.938 25 C 0.016 3.984 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.266 0.734 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.034 0.966 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.118 0.882 48 H 0.108 0.892 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.202 -9.673 -4.766 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.248 4.248 4 C -0.735 4.735 5 S 2.684 3.316 6 O -0.974 6.974 7 O -0.987 6.987 8 N -0.823 5.823 9 C 0.111 3.889 10 C -0.575 4.575 11 H 0.042 0.958 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.763 3.237 15 H -0.182 1.182 16 H -0.210 1.210 17 H -0.157 1.157 18 C -0.012 4.012 19 C -0.089 4.089 20 N -0.262 5.262 21 C -0.123 4.123 22 C -0.010 4.010 23 O -0.325 6.325 24 C -0.015 4.015 25 C -0.112 4.112 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.179 0.821 34 H 0.170 0.830 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.126 0.874 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.136 0.864 48 H 0.126 0.874 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.402 -9.600 -5.630 23.240 hybrid contribution 0.378 0.987 1.563 1.887 sum -20.024 -8.612 -4.067 22.173 Atomic orbital electron populations 1.21789 0.90811 1.03351 1.03321 1.20980 1.00172 0.95524 0.94298 1.22405 1.01438 0.96381 1.04554 1.30642 1.21881 1.12241 1.08697 1.05549 0.80015 0.73163 0.72889 1.93567 1.75902 1.42573 1.85394 1.93481 1.82689 1.65903 1.56638 1.57100 1.83617 1.14209 1.27386 1.19208 0.94249 0.91501 0.83990 1.21659 0.93015 1.34974 1.07866 0.95809 1.25935 0.96747 0.95763 1.00727 1.70080 1.14080 1.42714 1.32217 0.85813 0.80274 0.78533 0.79041 1.18205 1.21048 1.15738 1.21403 0.98123 0.78559 1.03104 1.22607 0.98038 0.86992 1.01227 1.62301 1.02655 1.07577 1.53700 1.22950 0.93751 0.97641 0.97993 1.22714 0.89020 0.90677 0.98540 1.87948 1.15111 1.70890 1.58517 1.22834 0.86499 0.92453 0.99712 1.22916 0.94548 0.96472 0.97300 0.91456 0.90798 0.90983 0.89963 0.89364 0.90783 0.93631 0.82063 0.82954 0.93910 0.93229 0.92468 0.91011 0.89480 0.88545 0.93605 0.94790 0.89438 0.87448 0.91568 0.91665 0.86429 0.87415 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.81 2.92 -10.80 -0.03 -1.85 16 3 C -0.19 -4.42 8.88 71.98 0.64 -3.78 16 4 C -0.60 -13.27 5.62 71.98 0.40 -12.87 16 5 S 2.58 94.95 5.02 -56.49 -0.28 94.66 16 6 O -0.98 -45.42 14.73 -127.65 -1.88 -47.31 16 7 O -1.00 -40.67 16.53 -127.65 -2.11 -42.78 16 8 N -0.99 -38.02 2.70 -519.83 -1.40 -39.42 16 9 C 0.24 10.49 4.08 85.63 0.35 10.84 16 10 C -0.54 -31.17 9.94 25.60 0.25 -30.91 16 11 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 12 C 0.01 0.33 5.47 84.65 0.46 0.79 16 13 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 14 Si 0.94 42.40 27.47 68.60 1.88 44.28 16 15 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.23 -9.32 6.54 99.48 0.65 -8.67 16 18 C 0.11 3.82 4.92 86.38 0.43 4.25 16 19 C 0.04 1.01 5.60 86.30 0.48 1.49 16 20 N -0.54 -12.44 4.88 -895.15 -4.36 -16.80 16 21 C 0.00 0.12 4.94 86.31 0.43 0.55 16 22 C 0.07 1.44 7.01 72.02 0.50 1.94 16 23 O -0.41 -9.18 10.83 -148.98 -1.61 -10.79 16 24 C 0.06 1.03 7.01 72.02 0.50 1.54 16 25 C 0.02 0.28 5.63 86.31 0.49 0.77 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.37 5.61 -2.39 -0.01 1.36 16 33 H 0.16 2.51 6.96 -2.39 -0.02 2.49 16 34 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.04 1.85 6.66 -2.39 -0.02 1.84 16 36 H 0.05 1.99 7.54 -2.39 -0.02 1.98 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 38 H 0.07 2.64 6.25 -2.39 -0.01 2.63 16 39 H 0.09 2.98 6.82 -2.39 -0.02 2.96 16 40 H 0.10 1.88 6.96 -2.39 -0.02 1.86 16 41 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 2.34 6.05 -2.39 -0.01 2.33 16 44 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -80.81 389.35 -3.05 -83.85 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.85 Total: 23.01 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 5.57 Total: -28.38 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.47 Total: -116.55 kcal Atomic # 8 Polarization: -95.27 SS G_CDS: -5.60 Total: -100.87 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 16 Polarization: 94.95 SS G_CDS: -0.28 Total: 94.66 kcal Total: -80.81 -3.05 -83.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354493176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.699 kcal (2) G-P(sol) polarization free energy of solvation -80.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds