Wall clock time and date at job start Tue Mar 31 2020 18:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 H 1.08998 * 109.46988 * 305.00440 * 3 2 1 5 5 C 1.50700 * 109.47380 * 185.00345 * 3 2 1 6 6 H 1.07999 * 119.99911 * 239.99996 * 5 3 2 7 7 C 1.37879 * 119.99860 * 60.00197 * 5 3 2 8 8 N 1.31517 * 119.99905 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99674 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47389 * 89.99778 * 9 7 5 11 11 H 1.48506 * 109.46610 * 209.99851 * 9 7 5 12 12 H 1.48502 * 109.47150 * 329.99449 * 9 7 5 13 13 N 1.46500 * 109.47152 * 65.00193 * 3 2 1 14 14 C 1.34780 * 119.99855 * 275.00578 * 13 3 2 15 15 O 1.21278 * 120.00148 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99781 * 179.97438 * 14 13 3 17 17 H 1.09008 * 109.47417 * 299.99834 * 16 14 13 18 18 C 1.53002 * 109.47209 * 59.99423 * 16 14 13 19 19 N 1.46501 * 109.47477 * 179.97438 * 16 14 13 20 20 C 1.34770 * 120.00122 * 154.99801 * 19 16 14 21 21 O 1.21282 * 120.00256 * 0.02562 * 20 19 16 22 22 C 1.50703 * 120.00010 * 180.02562 * 20 19 16 23 23 O 1.42902 * 109.47357 * 180.02562 * 22 20 19 24 24 C 1.35898 * 116.99694 * 180.02562 * 23 22 20 25 25 C 1.38735 * 120.05254 * 179.97438 * 24 23 22 26 26 C 1.38144 * 119.94607 * 179.97438 * 25 24 23 27 27 C 1.38265 * 120.05233 * 359.97438 * 26 25 24 28 28 C 1.38269 * 120.11630 * 0.04162 * 27 26 25 29 29 C 1.38142 * 120.04900 * 359.95598 * 28 27 26 30 30 H 1.09005 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46932 * 299.99435 * 1 2 3 32 32 H 1.08995 * 109.47827 * 59.99943 * 1 2 3 33 33 H 1.09005 * 109.47026 * 240.00766 * 2 1 3 34 34 H 1.08995 * 109.47827 * 120.00057 * 2 1 3 35 35 H 0.96997 * 119.99312 * 180.02562 * 8 7 5 36 36 H 0.96998 * 119.99977 * 95.00091 * 13 3 2 37 37 H 1.09002 * 109.47151 * 179.97438 * 18 16 14 38 38 H 1.08995 * 109.47685 * 299.99956 * 18 16 14 39 39 H 1.09008 * 109.47095 * 60.00491 * 18 16 14 40 40 H 0.96998 * 119.99602 * 334.99910 * 19 16 14 41 41 H 1.08999 * 109.46805 * 59.99992 * 22 20 19 42 42 H 1.08998 * 109.47364 * 300.00344 * 22 20 19 43 43 H 1.08002 * 120.02704 * 359.70561 * 25 24 23 44 44 H 1.08001 * 119.97447 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.94053 * 179.97438 * 27 26 25 46 46 H 1.07992 * 119.97612 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.02748 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4445 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 3.4060 0.3368 -2.1730 9 14 6.0049 0.8804 -1.3813 10 1 6.5539 -0.3515 -0.7601 11 1 6.3833 0.9219 -2.8168 12 1 6.5574 2.0724 -0.6891 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3394 2.6325 0.4342 16 6 0.0362 3.3375 2.6549 17 1 0.0673 2.6128 3.4686 18 6 1.0067 4.4819 2.9540 19 7 -1.3223 3.8707 2.5270 20 6 -2.0805 4.0543 3.6260 21 8 -1.6379 3.7786 4.7210 22 6 -3.4782 4.6023 3.4943 23 8 -4.0735 4.7051 4.7894 24 6 -5.3435 5.1852 4.8481 25 6 -5.9827 5.3110 6.0730 26 6 -7.2735 5.7998 6.1302 27 6 -7.9282 6.1639 4.9681 28 6 -7.2935 6.0392 3.7461 29 6 -6.0027 5.5510 3.6836 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8292 -0.0615 -2.9496 36 1 2.2719 2.1232 1.9978 37 1 0.7179 4.9692 3.8853 38 1 2.0176 4.0857 3.0492 39 1 0.9756 5.2068 2.1404 40 1 -1.6761 4.0916 1.6513 41 1 -4.0734 3.9336 2.8725 42 1 -3.4396 5.5891 3.0331 43 1 -5.4731 5.0231 6.9807 44 1 -7.7717 5.8976 7.0835 45 1 -8.9375 6.5454 5.0149 46 1 -7.8071 6.3239 2.8398 47 1 -5.5071 5.4541 2.7289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358057254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:18 Heat of formation + Delta-G solvation = -89.288784 kcal Electronic energy + Delta-G solvation = -28071.589614 eV Core-core repulsion = 24026.689938 eV Total energy + Delta-G solvation = -4044.899675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70514 -39.94961 -38.87056 -37.47654 -35.49789 -34.62990 -32.66047 -31.70837 -31.33347 -30.66134 -30.08239 -28.08398 -27.02895 -24.43151 -23.18017 -22.88012 -22.37782 -20.71224 -20.24519 -19.43742 -18.70766 -18.11258 -16.75345 -16.62867 -16.55962 -16.11639 -15.77023 -15.50071 -15.18682 -14.82212 -14.64216 -14.46778 -14.22459 -13.78556 -13.70003 -13.49540 -13.01490 -12.91460 -12.74595 -12.55892 -12.32762 -12.01969 -11.92835 -11.57139 -11.49345 -11.37171 -11.30829 -11.22809 -11.04982 -10.87380 -10.37754 -10.27481 -10.00024 -9.70757 -9.40895 -9.34421 -9.12827 -9.00922 -8.56892 -8.54074 -7.95887 -6.18506 -4.28221 0.99967 1.11435 2.27474 2.40521 3.17332 3.20876 3.28099 3.29617 3.40176 3.46224 3.96646 4.31138 4.34635 4.51794 4.59602 4.67582 4.73839 4.81637 5.04504 5.11483 5.13211 5.15069 5.15873 5.29140 5.30569 5.64474 5.66869 5.80784 5.95946 6.06601 6.15320 6.20035 6.26937 6.32526 6.38147 6.41136 6.58211 6.96703 7.02747 7.10456 7.25656 7.31801 7.37862 7.53771 7.64056 7.81411 8.03272 8.10503 8.52053 8.67838 8.95475 9.39024 10.86717 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.001930 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.975367 B =14504.555429 C =14931.854712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.500 3.500 15 O -0.547 6.547 16 C 0.123 3.877 17 H 0.110 0.890 18 C -0.158 4.158 19 N -0.703 5.703 20 C 0.519 3.481 21 O -0.521 6.521 22 C 0.042 3.958 23 O -0.289 6.289 24 C 0.130 3.870 25 C -0.149 4.149 26 C -0.081 4.081 27 C -0.161 4.161 28 C -0.080 4.080 29 C -0.211 4.211 30 H 0.023 0.977 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.391 0.609 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.411 0.589 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 10.872 11.764 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.283 3.717 15 O -0.427 6.427 16 C 0.015 3.985 17 H 0.128 0.872 18 C -0.216 4.216 19 N -0.359 5.359 20 C 0.303 3.697 21 O -0.396 6.396 22 C -0.036 4.036 23 O -0.201 6.201 24 C 0.085 3.915 25 C -0.168 4.168 26 C -0.099 4.099 27 C -0.179 4.179 28 C -0.098 4.098 29 C -0.230 4.230 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.224 0.776 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.248 0.752 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.231 10.460 11.827 23.371 hybrid contribution 1.063 0.041 -0.510 1.180 sum -16.168 10.502 11.317 22.355 Atomic orbital electron populations 1.21832 0.98368 0.98145 1.01059 1.21952 0.92590 0.99773 1.02453 1.18838 0.94349 0.89184 0.80684 0.93170 1.21213 0.90579 1.39234 1.06355 0.91995 1.24885 0.98669 0.94743 0.95354 1.69889 1.35177 1.37443 1.09371 0.86445 0.84766 0.78490 0.77392 1.20524 1.21077 1.19844 1.46468 1.14146 1.55216 1.18795 1.20212 0.83310 0.79653 0.88517 1.90661 1.51372 1.60376 1.40242 1.20892 0.82253 0.97240 0.98155 0.87241 1.22109 0.98912 0.98021 1.02585 1.45548 1.14637 1.65762 1.09917 1.19910 0.86246 0.78781 0.84758 1.90749 1.73154 1.49679 1.26014 1.22454 0.92963 1.02849 0.85378 1.86155 1.25493 1.79513 1.28959 1.19096 0.83764 0.94157 0.94493 1.20489 0.95514 1.04758 0.96050 1.20988 0.93510 0.96687 0.98713 1.21088 1.00598 1.03678 0.92566 1.20969 0.93881 0.96847 0.98080 1.21320 0.97320 1.06854 0.97512 0.95788 0.94440 0.93154 0.88166 0.94929 0.92513 0.77643 0.91350 0.90530 0.91718 0.75166 0.88612 0.88752 0.84980 0.85307 0.85916 0.85689 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.28 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.92 11.29 55.43 0.63 -23.30 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 13 N -0.70 -13.34 4.91 -54.93 -0.27 -13.61 16 14 C 0.50 8.88 5.79 -10.99 -0.06 8.82 16 15 O -0.55 -11.19 12.98 5.56 0.07 -11.12 16 16 C 0.12 1.74 2.98 -69.08 -0.21 1.53 16 17 H 0.11 1.59 7.58 -51.92 -0.39 1.19 16 18 C -0.16 -1.94 9.38 37.16 0.35 -1.59 16 19 N -0.70 -8.94 4.95 -54.93 -0.27 -9.21 16 20 C 0.52 6.80 7.87 -10.99 -0.09 6.71 16 21 O -0.52 -8.80 16.16 -14.35 -0.23 -9.03 16 22 C 0.04 0.42 5.22 36.01 0.19 0.61 16 23 O -0.29 -3.56 9.67 -39.33 -0.38 -3.94 16 24 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 25 C -0.15 -1.43 9.99 -39.43 -0.39 -1.83 16 26 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 27 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 28 C -0.08 -0.61 10.04 -39.60 -0.40 -1.00 16 29 C -0.21 -1.84 9.04 -39.44 -0.36 -2.20 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.78 5.65 -51.93 -0.29 0.48 16 32 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 33 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.39 6.52 7.96 -40.82 -0.32 6.20 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.88 7.56 -51.93 -0.39 0.48 16 39 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.41 4.77 7.79 -40.82 -0.32 4.45 16 41 H 0.10 0.76 7.66 -51.93 -0.40 0.36 16 42 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 43 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.88 6.30 -52.48 -0.33 0.55 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -31.62 388.51 -8.91 -40.53 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.88 Total: 10.88 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.40 Total: -2.09 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.08 Total: -46.12 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.54 Total: -24.09 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.62 -8.91 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358057254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.757 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds