Wall clock time and date at job start Tue Mar 31 2020 18:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 H 1.08998 * 109.46988 * 305.00440 * 3 2 1 5 5 C 1.50700 * 109.47380 * 185.00345 * 3 2 1 6 6 H 1.07999 * 119.99911 * 239.99996 * 5 3 2 7 7 C 1.37879 * 119.99860 * 60.00197 * 5 3 2 8 8 N 1.31517 * 119.99905 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99674 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47389 * 89.99778 * 9 7 5 11 11 H 1.48506 * 109.46610 * 209.99851 * 9 7 5 12 12 H 1.48502 * 109.47150 * 329.99449 * 9 7 5 13 13 N 1.46500 * 109.47152 * 65.00193 * 3 2 1 14 14 C 1.34780 * 119.99855 * 275.00578 * 13 3 2 15 15 O 1.21278 * 120.00148 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99781 * 179.97438 * 14 13 3 17 17 H 1.09008 * 109.47417 * 299.99834 * 16 14 13 18 18 C 1.53002 * 109.47209 * 59.99423 * 16 14 13 19 19 N 1.46501 * 109.47477 * 179.97438 * 16 14 13 20 20 C 1.34770 * 120.00122 * 154.99801 * 19 16 14 21 21 O 1.21282 * 120.00256 * 0.02562 * 20 19 16 22 22 C 1.50703 * 120.00010 * 180.02562 * 20 19 16 23 23 O 1.42902 * 109.47357 * 180.02562 * 22 20 19 24 24 C 1.35898 * 116.99694 * 180.02562 * 23 22 20 25 25 C 1.38735 * 120.05254 * 179.97438 * 24 23 22 26 26 C 1.38144 * 119.94607 * 179.97438 * 25 24 23 27 27 C 1.38265 * 120.05233 * 359.97438 * 26 25 24 28 28 C 1.38269 * 120.11630 * 0.04162 * 27 26 25 29 29 C 1.38142 * 120.04900 * 359.95598 * 28 27 26 30 30 H 1.09005 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46932 * 299.99435 * 1 2 3 32 32 H 1.08995 * 109.47827 * 59.99943 * 1 2 3 33 33 H 1.09005 * 109.47026 * 240.00766 * 2 1 3 34 34 H 1.08995 * 109.47827 * 120.00057 * 2 1 3 35 35 H 0.96997 * 119.99312 * 180.02562 * 8 7 5 36 36 H 0.96998 * 119.99977 * 95.00091 * 13 3 2 37 37 H 1.09002 * 109.47151 * 179.97438 * 18 16 14 38 38 H 1.08995 * 109.47685 * 299.99956 * 18 16 14 39 39 H 1.09008 * 109.47095 * 60.00491 * 18 16 14 40 40 H 0.96998 * 119.99602 * 334.99910 * 19 16 14 41 41 H 1.08999 * 109.46805 * 59.99992 * 22 20 19 42 42 H 1.08998 * 109.47364 * 300.00344 * 22 20 19 43 43 H 1.08002 * 120.02704 * 359.70561 * 25 24 23 44 44 H 1.08001 * 119.97447 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.94053 * 179.97438 * 27 26 25 46 46 H 1.07992 * 119.97612 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.02748 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4445 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 3.4060 0.3368 -2.1730 9 14 6.0049 0.8804 -1.3813 10 1 6.5539 -0.3515 -0.7601 11 1 6.3833 0.9219 -2.8168 12 1 6.5574 2.0724 -0.6891 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3394 2.6325 0.4342 16 6 0.0362 3.3375 2.6549 17 1 0.0673 2.6128 3.4686 18 6 1.0067 4.4819 2.9540 19 7 -1.3223 3.8707 2.5270 20 6 -2.0805 4.0543 3.6260 21 8 -1.6379 3.7786 4.7210 22 6 -3.4782 4.6023 3.4943 23 8 -4.0735 4.7051 4.7894 24 6 -5.3435 5.1852 4.8481 25 6 -5.9827 5.3110 6.0730 26 6 -7.2735 5.7998 6.1302 27 6 -7.9282 6.1639 4.9681 28 6 -7.2935 6.0392 3.7461 29 6 -6.0027 5.5510 3.6836 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8292 -0.0615 -2.9496 36 1 2.2719 2.1232 1.9978 37 1 0.7179 4.9692 3.8853 38 1 2.0176 4.0857 3.0492 39 1 0.9756 5.2068 2.1404 40 1 -1.6761 4.0916 1.6513 41 1 -4.0734 3.9336 2.8725 42 1 -3.4396 5.5891 3.0331 43 1 -5.4731 5.0231 6.9807 44 1 -7.7717 5.8976 7.0835 45 1 -8.9375 6.5454 5.0149 46 1 -7.8071 6.3239 2.8398 47 1 -5.5071 5.4541 2.7289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358057254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:17 Heat of formation + Delta-G solvation = -109.272240 kcal Electronic energy + Delta-G solvation = -28072.456161 eV Core-core repulsion = 24026.689938 eV Total energy + Delta-G solvation = -4045.766223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65690 -41.03040 -40.09523 -38.21932 -37.12505 -35.96311 -34.39447 -33.16846 -32.18544 -31.75156 -30.91164 -29.06828 -28.71782 -25.76158 -24.75098 -23.67445 -23.13231 -22.06699 -21.50722 -21.08369 -19.48843 -19.36527 -18.20565 -17.68430 -17.44550 -17.15073 -16.96576 -16.79213 -16.44992 -16.33589 -15.68847 -15.51682 -15.28062 -14.99296 -14.79320 -14.57836 -14.31717 -14.10578 -13.72475 -13.68915 -13.55453 -13.30949 -13.25033 -13.14682 -12.90446 -12.68673 -12.61506 -12.47008 -12.16179 -12.10652 -12.07299 -11.83536 -11.59150 -11.09416 -11.03207 -10.76568 -10.52815 -10.28548 -9.94230 -9.66307 -9.20169 -8.15423 -6.31841 0.40389 0.48446 1.33832 1.41255 1.45743 1.47045 1.56412 1.72308 2.32477 2.49204 2.71784 2.85550 3.14607 3.46776 3.78818 3.88905 3.99765 4.00684 4.04783 4.06908 4.13343 4.31028 4.48334 4.49951 4.54516 4.57064 4.62487 4.72214 4.75346 4.77860 5.07086 5.10204 5.14990 5.18582 5.27352 5.34831 5.42966 5.49091 5.54823 5.61305 5.61906 5.79072 5.82888 5.90595 6.17239 6.28406 6.42847 6.75496 6.88063 7.03891 7.32560 7.49038 8.89592 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.001930 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.975367 B =14504.555429 C =14931.854712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.124 4.124 3 C 0.280 3.720 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.697 5.697 14 C 0.501 3.499 15 O -0.574 6.574 16 C 0.133 3.867 17 H 0.110 0.890 18 C -0.151 4.151 19 N -0.698 5.698 20 C 0.520 3.480 21 O -0.563 6.563 22 C 0.045 3.955 23 O -0.318 6.318 24 C 0.105 3.895 25 C -0.171 4.171 26 C -0.083 4.083 27 C -0.162 4.162 28 C -0.085 4.085 29 C -0.217 4.217 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.418 0.582 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.151 0.849 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 11.954 12.467 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.346 5.346 14 C 0.287 3.713 15 O -0.454 6.454 16 C 0.025 3.975 17 H 0.128 0.872 18 C -0.209 4.209 19 N -0.353 5.353 20 C 0.306 3.694 21 O -0.441 6.441 22 C -0.033 4.033 23 O -0.232 6.232 24 C 0.060 3.940 25 C -0.190 4.190 26 C -0.101 4.101 27 C -0.180 4.180 28 C -0.103 4.103 29 C -0.236 4.236 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.256 0.744 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.169 0.831 45 H 0.165 0.835 46 H 0.167 0.833 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.027 11.566 12.547 24.822 hybrid contribution 1.204 -0.266 -0.728 1.432 sum -16.822 11.300 11.819 23.460 Atomic orbital electron populations 1.21669 0.96893 0.99116 1.00308 1.21817 0.93828 0.99344 1.01295 1.18396 0.93627 0.89061 0.81228 0.97601 1.21572 0.91475 1.38846 1.06576 0.90972 1.25713 1.02978 0.94493 0.95144 1.70035 1.36902 1.38325 1.09884 0.85422 0.79543 0.78768 0.77061 1.20016 1.21391 1.18897 1.46205 1.15181 1.55402 1.17809 1.20759 0.82330 0.78821 0.89400 1.90651 1.52004 1.61120 1.41668 1.20745 0.83555 0.97770 0.95464 0.87219 1.22076 0.98841 0.97218 1.02812 1.45526 1.14139 1.65305 1.10365 1.20458 0.87232 0.77784 0.83886 1.90728 1.74232 1.51614 1.27499 1.22544 0.90860 1.04696 0.85198 1.86094 1.26621 1.80291 1.30171 1.19347 0.83481 0.95596 0.95580 1.20698 0.96583 1.05807 0.95903 1.21295 0.92791 0.95882 1.00159 1.21472 1.01625 1.02689 0.92242 1.21343 0.93565 0.96120 0.99281 1.21564 0.97887 1.06587 0.97548 0.93907 0.93895 0.95050 0.90925 0.94306 0.92656 0.76058 0.90827 0.89553 0.91533 0.74366 0.86518 0.85820 0.85514 0.83114 0.83452 0.83332 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.51 71.98 0.61 -4.64 16 2 C -0.12 -5.86 5.45 30.60 0.17 -5.69 16 3 C 0.28 13.50 2.24 44.25 0.10 13.60 16 4 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 5 C -0.55 -27.57 8.73 25.60 0.22 -27.34 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -50.54 11.29 21.45 0.24 -50.30 16 9 Si 0.97 40.93 29.54 68.60 2.03 42.96 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.70 -26.39 4.91 -446.09 -2.19 -28.58 16 14 C 0.50 17.61 5.79 87.66 0.51 18.12 16 15 O -0.57 -23.51 12.98 -3.02 -0.04 -23.55 16 16 C 0.13 3.64 2.98 44.24 0.13 3.77 16 17 H 0.11 3.08 7.58 -2.38 -0.02 3.06 16 18 C -0.15 -3.49 9.38 71.98 0.68 -2.82 16 19 N -0.70 -17.00 4.95 -446.09 -2.21 -19.21 16 20 C 0.52 13.21 7.87 87.66 0.69 13.90 16 21 O -0.56 -18.96 16.16 16.00 0.26 -18.70 16 22 C 0.04 0.83 5.22 71.24 0.37 1.20 16 23 O -0.32 -7.79 9.67 -73.37 -0.71 -8.50 16 24 C 0.10 2.17 6.69 22.51 0.15 2.32 16 25 C -0.17 -3.26 9.99 22.37 0.22 -3.04 16 26 C -0.08 -1.16 10.04 22.25 0.22 -0.94 16 27 C -0.16 -1.97 10.04 22.28 0.22 -1.75 16 28 C -0.09 -1.09 10.04 22.25 0.22 -0.87 16 29 C -0.22 -3.42 9.04 22.36 0.20 -3.22 16 30 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.04 1.76 5.65 -2.39 -0.01 1.75 16 32 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 33 H 0.07 3.88 5.95 -2.38 -0.01 3.86 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.40 13.08 7.96 -92.71 -0.74 12.34 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.82 7.56 -2.39 -0.02 1.80 16 39 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.42 9.19 7.79 -92.71 -0.72 8.47 16 41 H 0.12 1.64 7.66 -2.39 -0.02 1.62 16 42 H 0.12 1.52 7.66 -2.39 -0.02 1.50 16 43 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 45 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 46 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 Total: -1.00 -69.69 388.51 2.09 -67.60 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.46 Total: 34.34 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.17 Total: 3.93 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -4.16 Total: -98.08 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.49 Total: -50.75 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -69.69 2.09 -67.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358057254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.674 kcal (2) G-P(sol) polarization free energy of solvation -69.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds