Wall clock time and date at job start Tue Mar 31 2020 18:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 18 18 C 1.53008 * 109.46978 * 300.00009 * 16 14 13 19 19 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 20 20 C 1.34783 * 119.99735 * 204.99971 * 19 16 14 21 21 O 1.21283 * 119.99906 * 359.97438 * 20 19 16 22 22 C 1.50702 * 119.99860 * 180.02562 * 20 19 16 23 23 O 1.42904 * 109.46812 * 179.97438 * 22 20 19 24 24 C 1.35897 * 116.99953 * 179.97438 * 23 22 20 25 25 C 1.38733 * 120.05593 * 359.73179 * 24 23 22 26 26 C 1.38140 * 119.94550 * 179.74112 * 25 24 23 27 27 C 1.38268 * 120.05514 * 0.50441 * 26 25 24 28 28 C 1.38270 * 120.10914 * 359.77353 * 27 26 25 29 29 C 1.38139 * 120.05720 * 359.97234 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 37 37 H 1.08998 * 109.46647 * 299.99988 * 18 16 14 38 38 H 1.08996 * 109.46807 * 59.99819 * 18 16 14 39 39 H 1.08991 * 109.46791 * 180.02562 * 18 16 14 40 40 H 0.97000 * 120.00397 * 24.99949 * 19 16 14 41 41 H 1.08995 * 109.46868 * 299.99519 * 22 20 19 42 42 H 1.08996 * 109.47198 * 59.99706 * 22 20 19 43 43 H 1.08001 * 120.02539 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.97557 * 180.27853 * 26 25 24 45 45 H 1.08001 * 119.94624 * 179.74865 * 27 26 25 46 46 H 1.07998 * 119.96721 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.02747 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0674 2.6131 -3.4685 18 6 1.0069 4.4822 -2.9537 19 7 -1.3221 3.8710 -2.5266 20 6 -2.0804 4.0548 -3.6257 21 8 -1.6378 3.7791 -4.7207 22 6 -3.4776 4.6039 -3.4939 23 8 -4.0730 4.7067 -4.7889 24 6 -5.3426 5.1877 -4.8478 25 6 -6.0039 5.5481 -3.6826 26 6 -7.2925 6.0418 -3.7455 27 6 -7.9271 6.1672 -4.9675 28 6 -7.2723 5.8034 -6.1298 29 6 -5.9817 5.3141 -6.0726 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0605 2.9503 36 1 2.2720 2.1232 -1.9977 37 1 0.9758 5.2068 -2.1401 38 1 2.0178 4.0858 -3.0488 39 1 0.7182 4.9695 -3.8849 40 1 -1.6759 4.0918 -1.6508 41 1 -4.0732 3.9360 -2.8717 42 1 -3.4381 5.5909 -3.0331 43 1 -5.5102 5.4462 -2.7274 44 1 -7.8060 6.3267 -2.8392 45 1 -8.9361 6.5497 -5.0143 46 1 -7.7703 5.9019 -7.0830 47 1 -5.4709 5.0296 -6.9806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358057257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:25 Heat of formation + Delta-G solvation = -89.241733 kcal Electronic energy + Delta-G solvation = -28071.375146 eV Core-core repulsion = 24026.477511 eV Total energy + Delta-G solvation = -4044.897635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70478 -39.94899 -38.87007 -37.47634 -35.49750 -34.62919 -32.65937 -31.70788 -31.33345 -30.66117 -30.08202 -28.08427 -27.02766 -24.43089 -23.17924 -22.87929 -22.37779 -20.71184 -20.24500 -19.43674 -18.70761 -18.11204 -16.75197 -16.62671 -16.56255 -16.11539 -15.76909 -15.49965 -15.18460 -14.82339 -14.64131 -14.46960 -14.22392 -13.78663 -13.70060 -13.49530 -13.01681 -12.91282 -12.74169 -12.55891 -12.32791 -12.01844 -11.92873 -11.56949 -11.49273 -11.37116 -11.30555 -11.22772 -11.05093 -10.87193 -10.38793 -10.27294 -10.00032 -9.70334 -9.40842 -9.34432 -9.13800 -9.00902 -8.56188 -8.54056 -7.95944 -6.18169 -4.28035 0.99976 1.11423 2.27495 2.40472 3.17442 3.22122 3.27815 3.28676 3.40141 3.46219 3.96620 4.31300 4.34626 4.51807 4.59601 4.67604 4.73810 4.81655 5.04501 5.11521 5.13348 5.15079 5.15881 5.29172 5.30584 5.64465 5.66875 5.80818 5.95947 6.06604 6.15333 6.20039 6.26980 6.32606 6.38129 6.41135 6.58256 6.96759 7.02742 7.10455 7.25734 7.31840 7.37859 7.53739 7.64057 7.81475 8.03265 8.10604 8.52117 8.67783 8.95484 9.39135 10.87008 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029910 B = 0.001930 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.916061 B =14504.766461 C =14932.226280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.500 3.500 15 O -0.547 6.547 16 C 0.123 3.877 17 H 0.110 0.890 18 C -0.158 4.158 19 N -0.704 5.704 20 C 0.519 3.481 21 O -0.521 6.521 22 C 0.042 3.958 23 O -0.289 6.289 24 C 0.130 3.870 25 C -0.211 4.211 26 C -0.080 4.080 27 C -0.161 4.161 28 C -0.081 4.081 29 C -0.149 4.149 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.391 0.609 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.411 0.589 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.129 0.871 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.178 10.871 -11.751 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.346 5.346 14 C 0.283 3.717 15 O -0.427 6.427 16 C 0.015 3.985 17 H 0.128 0.872 18 C -0.216 4.216 19 N -0.359 5.359 20 C 0.303 3.697 21 O -0.396 6.396 22 C -0.036 4.036 23 O -0.201 6.201 24 C 0.085 3.915 25 C -0.230 4.230 26 C -0.098 4.098 27 C -0.179 4.179 28 C -0.099 4.099 29 C -0.168 4.168 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.224 0.776 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.248 0.752 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.147 0.853 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.228 10.452 -11.812 23.358 hybrid contribution 1.067 0.056 0.504 1.182 sum -16.161 10.508 -11.308 22.349 Atomic orbital electron populations 1.21834 0.98369 0.98143 1.01059 1.21949 0.92586 0.99775 1.02449 1.18829 0.94329 0.89182 0.80681 0.93177 1.21175 0.90576 1.39317 1.06386 0.92049 1.24882 0.98662 0.94719 0.95359 1.69877 1.35285 1.37419 1.09310 0.86502 0.84750 0.78332 0.77492 1.20172 1.21133 1.20133 1.46467 1.14152 1.55206 1.18797 1.20214 0.83310 0.79654 0.88517 1.90662 1.51371 1.60382 1.40238 1.20894 0.82255 0.97237 0.98153 0.87242 1.22107 0.98910 0.98022 1.02585 1.45551 1.14636 1.65766 1.09917 1.19915 0.86243 0.78782 0.84758 1.90749 1.73142 1.49690 1.26011 1.22454 0.92964 1.02845 0.85379 1.86154 1.25534 1.79468 1.28966 1.19097 0.83752 0.94168 0.94492 1.21320 0.97341 1.06852 0.97492 1.20970 0.93906 0.96820 0.98084 1.21090 1.00585 1.03687 0.92569 1.20988 0.93521 0.96678 0.98713 1.20487 0.95505 1.04764 0.96053 0.94447 0.93148 0.95786 0.88171 0.94929 0.92451 0.77644 0.91719 0.90532 0.91350 0.75165 0.88614 0.88747 0.85275 0.85690 0.85914 0.85309 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.52 37.16 0.32 -2.61 16 2 C -0.13 -3.01 5.45 -26.74 -0.15 -3.16 16 3 C 0.27 6.45 2.24 -69.09 -0.15 6.29 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.53 8.73 -34.44 -0.30 -13.84 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.93 11.29 55.43 0.63 -23.30 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.34 4.91 -54.94 -0.27 -13.61 16 14 C 0.50 8.88 5.79 -10.98 -0.06 8.82 16 15 O -0.55 -11.19 12.98 5.56 0.07 -11.12 16 16 C 0.12 1.74 2.99 -69.08 -0.21 1.53 16 17 H 0.11 1.59 7.58 -51.93 -0.39 1.19 16 18 C -0.16 -1.94 9.38 37.16 0.35 -1.59 16 19 N -0.70 -8.94 4.95 -54.92 -0.27 -9.21 16 20 C 0.52 6.80 7.87 -10.98 -0.09 6.71 16 21 O -0.52 -8.80 16.16 -14.35 -0.23 -9.03 16 22 C 0.04 0.42 5.22 36.01 0.19 0.61 16 23 O -0.29 -3.56 9.67 -39.33 -0.38 -3.94 16 24 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 25 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 26 C -0.08 -0.61 10.04 -39.61 -0.40 -1.00 16 27 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 28 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 29 C -0.15 -1.43 9.99 -39.43 -0.39 -1.83 16 30 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 31 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.39 6.53 7.96 -40.82 -0.32 6.20 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.88 7.56 -51.93 -0.39 0.48 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.41 4.77 7.79 -40.82 -0.32 4.45 16 41 H 0.10 0.76 7.65 -51.93 -0.40 0.36 16 42 H 0.09 0.68 7.68 -51.93 -0.40 0.28 16 43 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -31.60 388.52 -8.91 -40.51 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.88 Total: 10.92 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.40 Total: -2.09 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.08 Total: -46.12 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.54 Total: -24.10 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.60 -8.91 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358057257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.733 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds