Wall clock time and date at job start Tue Mar 31 2020 18:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 18 18 C 1.53008 * 109.46978 * 300.00009 * 16 14 13 19 19 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 20 20 C 1.34783 * 119.99735 * 204.99971 * 19 16 14 21 21 O 1.21283 * 119.99906 * 359.97438 * 20 19 16 22 22 C 1.50702 * 119.99860 * 180.02562 * 20 19 16 23 23 O 1.42904 * 109.46812 * 179.97438 * 22 20 19 24 24 C 1.35897 * 116.99953 * 179.97438 * 23 22 20 25 25 C 1.38733 * 120.05593 * 359.73179 * 24 23 22 26 26 C 1.38140 * 119.94550 * 179.74112 * 25 24 23 27 27 C 1.38268 * 120.05514 * 0.50441 * 26 25 24 28 28 C 1.38270 * 120.10914 * 359.77353 * 27 26 25 29 29 C 1.38139 * 120.05720 * 359.97234 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 37 37 H 1.08998 * 109.46647 * 299.99988 * 18 16 14 38 38 H 1.08996 * 109.46807 * 59.99819 * 18 16 14 39 39 H 1.08991 * 109.46791 * 180.02562 * 18 16 14 40 40 H 0.97000 * 120.00397 * 24.99949 * 19 16 14 41 41 H 1.08995 * 109.46868 * 299.99519 * 22 20 19 42 42 H 1.08996 * 109.47198 * 59.99706 * 22 20 19 43 43 H 1.08001 * 120.02539 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.97557 * 180.27853 * 26 25 24 45 45 H 1.08001 * 119.94624 * 179.74865 * 27 26 25 46 46 H 1.07998 * 119.96721 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.02747 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0674 2.6131 -3.4685 18 6 1.0069 4.4822 -2.9537 19 7 -1.3221 3.8710 -2.5266 20 6 -2.0804 4.0548 -3.6257 21 8 -1.6378 3.7791 -4.7207 22 6 -3.4776 4.6039 -3.4939 23 8 -4.0730 4.7067 -4.7889 24 6 -5.3426 5.1877 -4.8478 25 6 -6.0039 5.5481 -3.6826 26 6 -7.2925 6.0418 -3.7455 27 6 -7.9271 6.1672 -4.9675 28 6 -7.2723 5.8034 -6.1298 29 6 -5.9817 5.3141 -6.0726 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0605 2.9503 36 1 2.2720 2.1232 -1.9977 37 1 0.9758 5.2068 -2.1401 38 1 2.0178 4.0858 -3.0488 39 1 0.7182 4.9695 -3.8849 40 1 -1.6759 4.0918 -1.6508 41 1 -4.0732 3.9360 -2.8717 42 1 -3.4381 5.5909 -3.0331 43 1 -5.5102 5.4462 -2.7274 44 1 -7.8060 6.3267 -2.8392 45 1 -8.9361 6.5497 -5.0143 46 1 -7.7703 5.9019 -7.0830 47 1 -5.4709 5.0296 -6.9806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358057257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:25 Heat of formation + Delta-G solvation = -109.206597 kcal Electronic energy + Delta-G solvation = -28072.240888 eV Core-core repulsion = 24026.477511 eV Total energy + Delta-G solvation = -4045.763376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65644 -41.03024 -40.09491 -38.21928 -37.12456 -35.96274 -34.39331 -33.16792 -32.18572 -31.75154 -30.91133 -29.06752 -28.71736 -25.76055 -24.74977 -23.67425 -23.13244 -22.06667 -21.50712 -21.08351 -19.48806 -19.36482 -18.20321 -17.68353 -17.44614 -17.15100 -16.96393 -16.79075 -16.45045 -16.33687 -15.69040 -15.51708 -15.28060 -14.99304 -14.79202 -14.57343 -14.31738 -14.10613 -13.72356 -13.68827 -13.55394 -13.30912 -13.24905 -13.14275 -12.91009 -12.67071 -12.61601 -12.47057 -12.17848 -12.10690 -12.07426 -11.83514 -11.58433 -11.09779 -11.04105 -10.76476 -10.51935 -10.28482 -9.94253 -9.66367 -9.20160 -8.15074 -6.31650 0.40387 0.48424 1.33876 1.41155 1.47042 1.47396 1.55156 1.72327 2.32525 2.49342 2.71786 2.85535 3.14795 3.46745 3.78811 3.88895 3.99677 4.00738 4.04813 4.06877 4.13366 4.31028 4.48324 4.50005 4.54514 4.57034 4.62511 4.72220 4.75387 4.77903 5.07100 5.10198 5.15025 5.18607 5.27345 5.34821 5.43032 5.49084 5.54835 5.61185 5.61899 5.79122 5.82879 5.90678 6.17281 6.28379 6.42819 6.75389 6.88097 7.03870 7.32629 7.49105 8.89724 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029910 B = 0.001930 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.916061 B =14504.766461 C =14932.226280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 C 0.280 3.720 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.697 5.697 14 C 0.501 3.499 15 O -0.574 6.574 16 C 0.133 3.867 17 H 0.110 0.890 18 C -0.151 4.151 19 N -0.698 5.698 20 C 0.520 3.480 21 O -0.563 6.563 22 C 0.045 3.955 23 O -0.318 6.318 24 C 0.105 3.895 25 C -0.217 4.217 26 C -0.085 4.085 27 C -0.162 4.162 28 C -0.083 4.083 29 C -0.171 4.171 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.418 0.582 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.955 11.945 -12.458 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.346 5.346 14 C 0.287 3.713 15 O -0.455 6.455 16 C 0.025 3.975 17 H 0.128 0.872 18 C -0.209 4.209 19 N -0.353 5.353 20 C 0.306 3.694 21 O -0.441 6.441 22 C -0.033 4.033 23 O -0.232 6.232 24 C 0.060 3.940 25 C -0.236 4.236 26 C -0.103 4.103 27 C -0.180 4.180 28 C -0.101 4.101 29 C -0.190 4.190 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.239 0.761 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.256 0.744 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.166 0.834 46 H 0.169 0.831 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.017 11.549 -12.536 24.803 hybrid contribution 1.206 -0.247 0.722 1.427 sum -16.811 11.302 -11.814 23.451 Atomic orbital electron populations 1.21671 0.96895 0.99117 1.00305 1.21813 0.93824 0.99343 1.01291 1.18388 0.93615 0.89060 0.81222 0.97618 1.21544 0.91479 1.38927 1.06627 0.90973 1.25713 1.02983 0.94464 0.95144 1.70026 1.36990 1.38308 1.09808 0.85478 0.79519 0.78424 0.77395 1.19616 1.21399 1.19221 1.46203 1.15186 1.55391 1.17811 1.20763 0.82330 0.78823 0.89401 1.90652 1.52004 1.61128 1.41667 1.20746 0.83557 0.97768 0.95461 0.87222 1.22075 0.98843 0.97216 1.02810 1.45529 1.14139 1.65310 1.10365 1.20463 0.87227 0.77785 0.83886 1.90728 1.74221 1.51625 1.27497 1.22543 0.90862 1.04689 0.85199 1.86094 1.26662 1.80247 1.30178 1.19348 0.83469 0.95607 0.95578 1.21564 0.97904 1.06591 0.97528 1.21344 0.93589 0.96094 0.99285 1.21474 1.01610 1.02700 0.92244 1.21294 0.92802 0.95873 1.00159 1.20696 0.96573 1.05815 0.95906 0.93905 0.95046 0.93901 0.90926 0.94311 0.92645 0.76058 0.91535 0.89546 0.90827 0.74366 0.86516 0.85818 0.83639 0.83332 0.83449 0.83116 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.28 13.52 2.24 44.24 0.10 13.62 16 4 H 0.01 0.34 7.58 -2.39 -0.02 0.32 16 5 C -0.55 -27.62 8.73 25.60 0.22 -27.40 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -50.55 11.29 21.45 0.24 -50.30 16 9 Si 0.97 40.91 29.54 68.60 2.03 42.93 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 13 N -0.70 -26.39 4.91 -446.11 -2.19 -28.58 16 14 C 0.50 17.61 5.79 87.66 0.51 18.12 16 15 O -0.57 -23.53 12.98 -3.03 -0.04 -23.56 16 16 C 0.13 3.64 2.99 44.25 0.13 3.77 16 17 H 0.11 3.08 7.58 -2.39 -0.02 3.06 16 18 C -0.15 -3.49 9.38 71.98 0.68 -2.82 16 19 N -0.70 -17.00 4.95 -446.06 -2.21 -19.21 16 20 C 0.52 13.21 7.87 87.66 0.69 13.90 16 21 O -0.56 -18.96 16.16 16.00 0.26 -18.70 16 22 C 0.04 0.83 5.22 71.24 0.37 1.20 16 23 O -0.32 -7.79 9.67 -73.36 -0.71 -8.50 16 24 C 0.10 2.17 6.69 22.51 0.15 2.32 16 25 C -0.22 -3.42 9.04 22.36 0.20 -3.22 16 26 C -0.09 -1.09 10.04 22.25 0.22 -0.87 16 27 C -0.16 -1.97 10.04 22.28 0.22 -1.75 16 28 C -0.08 -1.16 10.04 22.25 0.22 -0.94 16 29 C -0.17 -3.26 9.99 22.36 0.22 -3.04 16 30 H 0.04 1.76 5.65 -2.39 -0.01 1.75 16 31 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.07 3.88 5.95 -2.39 -0.01 3.86 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.40 13.08 7.96 -92.71 -0.74 12.34 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.82 7.56 -2.39 -0.02 1.80 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.42 9.19 7.79 -92.71 -0.72 8.47 16 41 H 0.12 1.64 7.65 -2.39 -0.02 1.62 16 42 H 0.12 1.52 7.68 -2.39 -0.02 1.50 16 43 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 44 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 45 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 46 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 47 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -69.66 388.52 2.09 -67.57 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.46 Total: 34.44 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.17 Total: 3.92 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -4.16 Total: -98.10 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.49 Total: -50.77 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -69.66 2.09 -67.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358057257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.639 kcal (2) G-P(sol) polarization free energy of solvation -69.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds