Wall clock time and date at job start Tue Mar 31 2020 18:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00356 * 180.02562 * 14 13 3 17 17 O 1.42892 * 109.47801 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00768 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47632 * 180.02562 * 18 17 16 20 20 N 1.46504 * 109.46847 * 64.99946 * 19 18 17 21 21 C 1.34779 * 119.99462 * 180.02562 * 20 19 18 22 22 O 1.21550 * 120.00453 * 359.97438 * 21 20 19 23 23 C 1.47853 * 119.99650 * 180.02562 * 21 20 19 24 24 C 1.39573 * 120.14153 * 359.72308 * 23 21 20 25 25 C 1.37962 * 119.84939 * 179.74796 * 24 23 21 26 26 C 1.38359 * 120.14308 * 0.52635 * 25 24 23 27 27 C 1.38359 * 120.29325 * 359.74796 * 26 25 24 28 28 C 1.37950 * 120.14302 * 359.97346 * 27 26 25 29 29 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 30 30 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 32 32 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 33 33 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 34 34 H 0.97000 * 120.00114 * 354.93313 * 8 7 5 35 35 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 36 36 H 1.09003 * 109.47151 * 300.00291 * 16 14 13 37 37 H 1.09005 * 109.47073 * 59.99272 * 16 14 13 38 38 H 1.08997 * 109.46862 * 300.00478 * 18 17 16 39 39 H 1.09000 * 109.46912 * 59.99948 * 18 17 16 40 40 H 1.08996 * 109.47522 * 185.00117 * 19 18 17 41 41 H 1.09002 * 109.46958 * 305.00719 * 19 18 17 42 42 H 0.96993 * 120.00194 * 359.97438 * 20 19 18 43 43 H 1.07999 * 120.07803 * 0.02562 * 24 23 21 44 44 H 1.08004 * 119.92518 * 180.27760 * 25 24 23 45 45 H 1.08008 * 119.85068 * 179.72226 * 26 25 24 46 46 H 1.08001 * 119.92449 * 180.02562 * 27 26 25 47 47 H 1.08007 * 120.07162 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6799 17 8 -1.2649 3.8485 -2.5697 18 6 -1.7312 4.5071 -3.7491 19 6 -3.1536 5.0209 -3.5179 20 7 -3.1371 6.0531 -2.4783 21 6 -4.2852 6.6525 -2.1056 22 8 -5.3344 6.3370 -2.6322 23 6 -4.2685 7.6946 -1.0569 24 6 -3.0662 8.0558 -0.4469 25 6 -3.0567 9.0326 0.5273 26 6 -4.2372 9.6460 0.9076 27 6 -5.4332 9.2885 0.3109 28 6 -5.4557 8.3173 -0.6685 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8788 0.5739 0.4635 35 1 2.2909 2.1165 -1.9977 36 1 0.7550 4.1434 -2.8893 37 1 0.1003 2.6014 -3.4908 38 1 -1.0751 5.3464 -3.9798 39 1 -1.7292 3.8046 -4.5824 40 1 -3.5421 5.4443 -4.4441 41 1 -3.7909 4.1956 -3.2002 42 1 -2.3000 6.3046 -2.0579 43 1 -2.1447 7.5749 -0.7400 44 1 -2.1264 9.3162 0.9969 45 1 -4.2250 10.4070 1.6740 46 1 -6.3511 9.7715 0.6120 47 1 -6.3900 8.0389 -1.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358070317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:49 Heat of formation + Delta-G solvation = -97.733088 kcal Electronic energy + Delta-G solvation = -27955.337293 eV Core-core repulsion = 23910.071445 eV Total energy + Delta-G solvation = -4045.265848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41362 -39.43118 -38.57642 -37.71798 -35.31186 -34.85929 -32.51658 -31.92640 -31.55449 -31.24167 -29.74839 -27.96992 -26.43373 -24.39464 -23.01811 -22.39147 -22.32938 -20.80042 -20.69780 -19.57345 -18.46699 -17.87736 -17.10086 -16.82901 -16.47275 -16.16576 -15.96502 -15.43516 -15.27928 -15.04461 -14.82001 -14.51133 -14.03871 -13.85970 -13.52101 -13.47211 -13.26633 -12.96506 -12.72401 -12.55182 -12.47261 -12.35488 -11.99543 -11.99038 -11.63079 -11.53773 -11.39758 -10.82163 -10.73391 -10.48934 -10.20225 -9.92074 -9.86293 -9.73034 -9.44355 -9.31831 -9.19931 -9.16206 -9.11125 -8.35754 -8.12488 -6.62899 -4.25867 0.55847 1.04490 2.64030 2.89732 3.10362 3.16016 3.38852 3.43940 3.58994 3.60250 4.18842 4.40852 4.41448 4.49392 4.61929 4.68025 4.77681 4.83607 4.99432 5.04710 5.09204 5.09929 5.16651 5.24186 5.28978 5.33133 5.46588 5.60760 5.65342 5.98573 6.05653 6.06344 6.08523 6.11465 6.15059 6.26330 6.54873 6.67068 6.76591 6.86400 6.93605 7.03202 7.25549 7.33871 7.37806 7.62242 7.97353 8.20021 8.41705 8.66383 8.93235 9.41205 10.75737 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.002413 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.173855 B =11601.204763 C =12892.656249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.250 3.750 4 H 0.044 0.956 5 C -0.623 4.623 6 H 0.062 0.938 7 C 0.045 3.955 8 N -0.893 5.893 9 Si 1.033 2.967 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.284 1.284 13 N -0.701 5.701 14 C 0.500 3.500 15 O -0.528 6.528 16 C 0.042 3.958 17 O -0.359 6.359 18 C 0.045 3.955 19 C 0.124 3.876 20 N -0.718 5.718 21 C 0.559 3.441 22 O -0.542 6.542 23 C -0.135 4.135 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.095 4.095 27 C -0.130 4.130 28 C -0.061 4.061 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.271 0.729 35 H 0.392 0.608 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.405 0.595 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 15.439 -9.022 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.147 3.853 4 H 0.062 0.938 5 C -0.660 4.660 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.525 5.525 9 Si 0.860 3.140 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.210 1.210 13 N -0.351 5.351 14 C 0.284 3.716 15 O -0.405 6.405 16 C -0.038 4.038 17 O -0.277 6.277 18 C -0.032 4.032 19 C 0.001 3.999 20 N -0.371 5.371 21 C 0.347 3.653 22 O -0.420 6.420 23 C -0.138 4.138 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.114 4.114 27 C -0.148 4.148 28 C -0.080 4.080 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.225 0.775 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.241 0.759 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.959 14.781 -6.957 23.548 hybrid contribution 1.040 0.429 -2.125 2.405 sum -15.919 15.210 -9.082 23.817 Atomic orbital electron populations 1.21891 0.97284 0.98896 1.02069 1.22210 0.93783 0.99681 1.01115 1.19120 0.95739 0.88517 0.81932 0.93818 1.22036 0.89660 1.49573 1.04775 0.91999 1.25641 0.96839 0.91944 1.01838 1.70836 1.10519 1.40089 1.31059 0.84191 0.76454 0.77457 0.75905 1.20953 1.19271 1.20950 1.46187 1.14206 1.56342 1.18379 1.20030 0.83022 0.79863 0.88716 1.90705 1.50465 1.58613 1.40726 1.22336 0.85236 0.98579 0.97661 1.88065 1.29460 1.74791 1.35377 1.22825 0.94751 0.96703 0.88963 1.21395 0.95888 0.91019 0.91603 1.45825 1.10255 1.40059 1.40917 1.18278 0.83593 0.81324 0.82118 1.90761 1.30774 1.64677 1.55834 1.19951 0.94862 0.99498 0.99495 1.21383 0.97058 0.96306 0.95437 1.21167 0.98790 0.96793 0.97711 1.21410 0.92587 0.98743 0.98610 1.21172 0.98466 0.98119 0.97063 1.21287 0.97717 0.93828 0.95174 0.93295 0.95093 0.92919 0.93181 0.92132 0.91946 0.77545 0.90690 0.90717 0.92417 0.91228 0.89676 0.90130 0.75883 0.85457 0.85183 0.85523 0.85310 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.53 37.16 0.32 -2.62 16 2 C -0.13 -2.83 5.03 -26.73 -0.13 -2.97 16 3 C 0.25 5.79 1.78 -69.08 -0.12 5.67 16 4 H 0.04 1.12 5.99 -51.93 -0.31 0.80 16 5 C -0.62 -16.30 8.97 -34.44 -0.31 -16.61 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.27 16 7 C 0.04 1.23 5.25 -17.82 -0.09 1.14 16 8 N -0.89 -26.01 13.70 55.43 0.76 -25.26 16 9 Si 1.03 24.65 26.33 -169.99 -4.48 20.17 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.11 5.88 56.52 0.33 -5.78 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.70 -13.30 5.03 -54.93 -0.28 -13.58 16 14 C 0.50 9.02 6.50 -10.99 -0.07 8.95 16 15 O -0.53 -11.65 13.64 -14.36 -0.20 -11.85 16 16 C 0.04 0.53 6.42 36.00 0.23 0.76 16 17 O -0.36 -4.74 9.82 -55.14 -0.54 -5.28 16 18 C 0.04 0.39 6.07 37.16 0.23 0.61 16 19 C 0.12 1.21 6.06 -4.04 -0.02 1.19 16 20 N -0.72 -7.67 5.45 -61.25 -0.33 -8.00 16 21 C 0.56 7.05 7.77 -12.32 -0.10 6.95 16 22 O -0.54 -8.42 16.35 5.32 0.09 -8.34 16 23 C -0.14 -1.48 5.87 -104.97 -0.62 -2.10 16 24 C -0.08 -0.77 9.54 -39.18 -0.37 -1.15 16 25 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 26 C -0.10 -0.71 10.04 -39.49 -0.40 -1.11 16 27 C -0.13 -1.04 10.03 -39.64 -0.40 -1.43 16 28 C -0.06 -0.61 9.59 -39.19 -0.38 -0.99 16 29 H 0.05 0.99 5.63 -51.93 -0.29 0.69 16 30 H 0.03 0.55 8.14 -51.94 -0.42 0.13 16 31 H 0.05 1.14 7.88 -51.93 -0.41 0.73 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.38 5.64 -51.93 -0.29 1.09 16 34 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 35 H 0.39 6.43 8.53 -40.82 -0.35 6.08 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.41 3.79 6.51 -40.82 -0.27 3.52 16 43 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 44 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.14 1.34 7.65 -52.48 -0.40 0.94 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -34.66 388.14 -8.71 -43.37 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.95 Total: 8.03 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.64 Total: -5.11 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.15 Total: -46.84 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.65 Total: -25.46 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.48 Total: 20.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.66 -8.71 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358070317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.362 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds