Wall clock time and date at job start Tue Mar 31 2020 18:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00356 * 180.02562 * 14 13 3 17 17 O 1.42892 * 109.47801 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00768 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47632 * 180.02562 * 18 17 16 20 20 N 1.46504 * 109.46847 * 64.99946 * 19 18 17 21 21 C 1.34779 * 119.99462 * 180.02562 * 20 19 18 22 22 O 1.21550 * 120.00453 * 359.97438 * 21 20 19 23 23 C 1.47853 * 119.99650 * 180.02562 * 21 20 19 24 24 C 1.39573 * 120.14153 * 359.72308 * 23 21 20 25 25 C 1.37962 * 119.84939 * 179.74796 * 24 23 21 26 26 C 1.38359 * 120.14308 * 0.52635 * 25 24 23 27 27 C 1.38359 * 120.29325 * 359.74796 * 26 25 24 28 28 C 1.37950 * 120.14302 * 359.97346 * 27 26 25 29 29 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 30 30 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 32 32 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 33 33 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 34 34 H 0.97000 * 120.00114 * 354.93313 * 8 7 5 35 35 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 36 36 H 1.09003 * 109.47151 * 300.00291 * 16 14 13 37 37 H 1.09005 * 109.47073 * 59.99272 * 16 14 13 38 38 H 1.08997 * 109.46862 * 300.00478 * 18 17 16 39 39 H 1.09000 * 109.46912 * 59.99948 * 18 17 16 40 40 H 1.08996 * 109.47522 * 185.00117 * 19 18 17 41 41 H 1.09002 * 109.46958 * 305.00719 * 19 18 17 42 42 H 0.96993 * 120.00194 * 359.97438 * 20 19 18 43 43 H 1.07999 * 120.07803 * 0.02562 * 24 23 21 44 44 H 1.08004 * 119.92518 * 180.27760 * 25 24 23 45 45 H 1.08008 * 119.85068 * 179.72226 * 26 25 24 46 46 H 1.08001 * 119.92449 * 180.02562 * 27 26 25 47 47 H 1.08007 * 120.07162 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6799 17 8 -1.2649 3.8485 -2.5697 18 6 -1.7312 4.5071 -3.7491 19 6 -3.1536 5.0209 -3.5179 20 7 -3.1371 6.0531 -2.4783 21 6 -4.2852 6.6525 -2.1056 22 8 -5.3344 6.3370 -2.6322 23 6 -4.2685 7.6946 -1.0569 24 6 -3.0662 8.0558 -0.4469 25 6 -3.0567 9.0326 0.5273 26 6 -4.2372 9.6460 0.9076 27 6 -5.4332 9.2885 0.3109 28 6 -5.4557 8.3173 -0.6685 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8788 0.5739 0.4635 35 1 2.2909 2.1165 -1.9977 36 1 0.7550 4.1434 -2.8893 37 1 0.1003 2.6014 -3.4908 38 1 -1.0751 5.3464 -3.9798 39 1 -1.7292 3.8046 -4.5824 40 1 -3.5421 5.4443 -4.4441 41 1 -3.7909 4.1956 -3.2002 42 1 -2.3000 6.3046 -2.0579 43 1 -2.1447 7.5749 -0.7400 44 1 -2.1264 9.3162 0.9969 45 1 -4.2250 10.4070 1.6740 46 1 -6.3511 9.7715 0.6120 47 1 -6.3900 8.0389 -1.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358070317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:48 Heat of formation + Delta-G solvation = -122.427555 kcal Electronic energy + Delta-G solvation = -27956.408125 eV Core-core repulsion = 23910.071445 eV Total energy + Delta-G solvation = -4046.336680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25846 -40.81279 -39.36412 -38.72306 -36.96076 -35.86332 -34.46433 -33.28170 -32.59577 -31.90040 -30.61867 -29.46498 -27.83854 -25.14438 -24.26637 -23.69913 -23.04486 -22.35469 -21.56910 -21.21488 -19.85269 -19.19381 -18.09380 -17.73619 -17.67798 -17.24036 -16.95893 -16.68625 -16.27210 -15.92528 -15.89233 -15.51774 -15.35180 -15.04146 -14.67391 -14.51218 -14.43704 -14.29757 -14.22043 -13.98106 -13.61051 -13.57753 -13.40552 -12.91555 -12.67532 -12.63454 -12.48100 -12.36208 -12.29985 -12.03692 -11.72008 -11.54440 -11.14986 -11.14893 -10.69222 -10.64345 -10.45833 -10.30498 -9.97737 -9.88939 -9.77389 -8.78506 -6.41424 -0.16643 0.39008 1.47510 1.49325 1.70693 1.78603 1.79825 2.00433 2.12641 2.43174 2.88182 2.98344 3.08687 3.65389 3.81619 3.89274 3.99342 4.02197 4.16011 4.23029 4.26234 4.31303 4.34757 4.40711 4.44441 4.48597 4.51397 4.55124 4.58227 4.80136 4.86595 4.87621 5.03230 5.08721 5.22179 5.27935 5.29692 5.35268 5.42735 5.48761 5.55126 5.67712 5.70278 5.92641 6.03398 6.08446 6.40895 6.56309 6.89876 7.08025 7.29096 7.50049 8.59323 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.002413 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.173855 B =11601.204763 C =12892.656249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.254 3.746 4 H 0.021 0.979 5 C -0.615 4.615 6 H 0.045 0.955 7 C 0.002 3.998 8 N -0.924 5.924 9 Si 1.066 2.934 10 H -0.275 1.275 11 H -0.256 1.256 12 H -0.281 1.281 13 N -0.701 5.701 14 C 0.495 3.505 15 O -0.572 6.572 16 C 0.053 3.947 17 O -0.392 6.392 18 C 0.048 3.952 19 C 0.121 3.879 20 N -0.712 5.712 21 C 0.553 3.447 22 O -0.583 6.583 23 C -0.159 4.159 24 C -0.090 4.090 25 C -0.132 4.132 26 C -0.091 4.091 27 C -0.130 4.130 28 C -0.079 4.079 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.261 0.739 35 H 0.405 0.595 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.412 0.588 43 H 0.137 0.863 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.153 0.847 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 16.678 -9.599 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.653 4.653 6 H 0.063 0.937 7 C -0.200 4.200 8 N -0.559 5.559 9 Si 0.889 3.111 10 H -0.201 1.201 11 H -0.180 1.180 12 H -0.207 1.207 13 N -0.352 5.352 14 C 0.282 3.718 15 O -0.452 6.452 16 C -0.026 4.026 17 O -0.311 6.311 18 C -0.028 4.028 19 C -0.003 4.003 20 N -0.363 5.363 21 C 0.342 3.658 22 O -0.465 6.465 23 C -0.162 4.162 24 C -0.109 4.109 25 C -0.150 4.150 26 C -0.109 4.109 27 C -0.148 4.148 28 C -0.098 4.098 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.240 0.760 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.249 0.751 43 H 0.155 0.845 44 H 0.169 0.831 45 H 0.174 0.826 46 H 0.171 0.829 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.368 16.034 -7.578 24.823 hybrid contribution 1.169 0.120 -1.994 2.314 sum -16.199 16.155 -9.573 24.799 Atomic orbital electron populations 1.21753 0.95803 1.00170 1.01226 1.22120 0.94993 0.98573 1.00903 1.18775 0.93452 0.89471 0.83418 0.96069 1.22212 0.91364 1.47865 1.03846 0.93689 1.26652 0.96983 0.91751 1.04635 1.70926 1.11611 1.42709 1.30628 0.83748 0.76048 0.77850 0.73499 1.20094 1.18047 1.20664 1.45985 1.15368 1.56481 1.17369 1.20995 0.81722 0.78821 0.90297 1.90687 1.51541 1.60091 1.42887 1.22259 0.85798 1.00012 0.94534 1.88018 1.29740 1.75532 1.37842 1.22994 0.93866 0.97866 0.88078 1.21505 0.96775 0.90174 0.91799 1.45858 1.10036 1.39650 1.40794 1.18653 0.83459 0.81534 0.82176 1.90723 1.32125 1.66179 1.57447 1.19987 0.96034 1.00073 1.00119 1.21554 0.96769 0.96817 0.95745 1.21511 1.00099 0.96204 0.97195 1.21811 0.91952 0.98658 0.98511 1.21475 0.99943 0.97288 0.96100 1.21399 0.97249 0.94907 0.96250 0.93217 0.92681 0.94675 0.92472 0.93293 0.92937 0.75982 0.87451 0.87493 0.89784 0.88701 0.88186 0.92479 0.75096 0.84497 0.83083 0.82573 0.82914 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.53 71.98 0.61 -4.57 16 2 C -0.13 -5.44 5.03 30.59 0.15 -5.29 16 3 C 0.25 11.59 1.78 44.25 0.08 11.67 16 4 H 0.02 1.08 5.99 -2.38 -0.01 1.07 16 5 C -0.62 -32.19 8.97 25.60 0.23 -31.96 16 6 H 0.04 2.46 7.96 -2.91 -0.02 2.44 16 7 C 0.00 0.09 5.25 84.65 0.44 0.54 16 8 N -0.92 -54.52 13.70 21.45 0.29 -54.23 16 9 Si 1.07 49.78 26.33 68.60 1.81 51.59 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -11.39 5.88 99.48 0.59 -10.81 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.70 -25.52 5.03 -446.09 -2.24 -27.76 16 14 C 0.49 16.95 6.50 87.66 0.57 17.52 16 15 O -0.57 -24.84 13.64 15.99 0.22 -24.62 16 16 C 0.05 1.15 6.42 71.23 0.46 1.60 16 17 O -0.39 -9.36 9.82 -129.94 -1.28 -10.64 16 18 C 0.05 0.69 6.07 71.98 0.44 1.13 16 19 C 0.12 2.24 6.06 86.38 0.52 2.76 16 20 N -0.71 -14.93 5.45 -465.96 -2.54 -17.47 16 21 C 0.55 14.35 7.77 86.79 0.67 15.03 16 22 O -0.58 -19.01 16.35 -3.87 -0.06 -19.07 16 23 C -0.16 -3.53 5.87 -20.09 -0.12 -3.65 16 24 C -0.09 -1.60 9.54 22.53 0.21 -1.39 16 25 C -0.13 -1.88 10.03 22.23 0.22 -1.66 16 26 C -0.09 -1.14 10.04 22.33 0.22 -0.92 16 27 C -0.13 -1.89 10.03 22.23 0.22 -1.67 16 28 C -0.08 -1.61 9.59 22.52 0.22 -1.39 16 29 H 0.05 1.92 5.63 -2.38 -0.01 1.91 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.48 7.88 -2.39 -0.02 1.46 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.19 5.64 -2.39 -0.01 2.18 16 34 H 0.26 15.34 8.73 -92.71 -0.81 14.53 16 35 H 0.41 12.49 8.53 -92.71 -0.79 11.70 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.41 7.31 6.51 -92.71 -0.60 6.71 16 43 H 0.14 2.01 6.41 -2.91 -0.02 1.99 16 44 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 47 H 0.13 2.68 7.65 -2.91 -0.02 2.65 16 Total: -1.00 -77.60 388.14 0.81 -76.79 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.55 Total: 27.67 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 5.17 Total: -2.26 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -4.49 Total: -99.46 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -1.12 Total: -54.33 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.81 Total: 51.59 kcal Total: -77.60 0.81 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358070317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.634 kcal (2) G-P(sol) polarization free energy of solvation -77.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds