Wall clock time and date at job start Tue Mar 31 2020 18:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47314 * 40.00488 * 16 14 13 18 18 N 1.46907 * 109.47040 * 159.99916 * 16 14 13 19 19 C 1.53003 * 109.47637 * 280.00343 * 16 14 13 20 20 C 1.50698 * 109.47425 * 174.99997 * 19 16 14 21 21 O 1.20827 * 119.99612 * 359.97438 * 20 19 16 22 22 O 1.34228 * 120.00091 * 180.02562 * 20 19 16 23 23 C 1.45195 * 116.99937 * 179.97438 * 22 20 19 24 24 C 1.50701 * 109.47157 * 179.97438 * 23 22 20 25 25 C 1.38243 * 120.00007 * 269.72924 * 24 23 22 26 26 C 1.38231 * 119.99662 * 179.76514 * 25 24 23 27 27 C 1.38231 * 120.00167 * 0.50510 * 26 25 24 28 28 C 1.38231 * 120.00112 * 359.74652 * 27 26 25 29 29 C 1.38231 * 119.99959 * 89.99947 * 24 23 22 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 37 37 H 1.00896 * 111.00011 * 296.04689 * 18 16 14 38 38 H 1.00901 * 110.99605 * 60.00507 * 18 16 14 39 39 H 1.08999 * 109.46611 * 294.99945 * 19 16 14 40 40 H 1.08998 * 109.46677 * 54.99576 * 19 16 14 41 41 H 1.08994 * 109.47252 * 299.99856 * 23 22 20 42 42 H 1.09005 * 109.47372 * 60.00155 * 23 22 20 43 43 H 1.07998 * 119.99659 * 359.97438 * 25 24 23 44 44 H 1.08005 * 119.99841 * 180.23083 * 26 25 24 45 45 H 1.08006 * 120.00019 * 179.73138 * 27 26 25 46 46 H 1.08002 * 120.00272 * 179.97438 * 28 27 26 47 47 H 1.08000 * 119.99970 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.8859 3.8921 3.0534 18 7 -1.0761 4.2626 2.3999 19 6 -0.4028 2.2793 3.6690 20 6 -0.6841 2.9395 4.9942 21 8 -0.5470 4.1338 5.1152 22 8 -1.0860 2.2005 6.0402 23 6 -1.3380 2.9032 7.2856 24 6 -1.7776 1.9183 8.3380 25 6 -3.1207 1.6344 8.5012 26 6 -3.5234 0.7273 9.4634 27 6 -2.5840 0.1119 10.2693 28 6 -1.2415 0.3996 10.1097 29 6 -0.8382 1.3028 9.1440 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8292 -0.0609 -2.9500 36 1 2.2719 2.1231 1.9979 37 1 -0.7917 5.0085 1.7828 38 1 -1.8765 3.7723 2.0298 39 1 -1.3056 1.7850 3.3104 40 1 0.3908 1.5422 3.7915 41 1 -0.4257 3.4018 7.6125 42 1 -2.1223 3.6446 7.1322 43 1 -3.8549 2.1189 7.8747 44 1 -4.5724 0.5027 9.5883 45 1 -2.8991 -0.5936 11.0240 46 1 -0.5075 -0.0809 10.7397 47 1 0.2107 1.5276 9.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381892227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:12 Heat of formation + Delta-G solvation = -106.616111 kcal Electronic energy + Delta-G solvation = -28174.976339 eV Core-core repulsion = 24129.325295 eV Total energy + Delta-G solvation = -4045.651045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64240 -39.57527 -39.18014 -36.64499 -35.43533 -34.31583 -32.50696 -32.43698 -31.26550 -30.95331 -29.83426 -27.31109 -26.69548 -24.49809 -22.95026 -22.88785 -21.74212 -21.02898 -19.96670 -19.40491 -18.00571 -17.44107 -16.97682 -16.83545 -16.44134 -15.98068 -15.55373 -15.41232 -15.22329 -15.04764 -14.53270 -14.35918 -13.84672 -13.71698 -13.51717 -13.27392 -13.21433 -12.90549 -12.71506 -12.52405 -12.22720 -11.90962 -11.62685 -11.47192 -11.43981 -11.30686 -11.24630 -11.04117 -10.86576 -10.74929 -10.43190 -10.38110 -10.25490 -9.72918 -9.62551 -9.27585 -9.21261 -9.11269 -8.57134 -8.40401 -7.92211 -6.16613 -4.26595 0.83090 1.04890 2.29394 2.55671 3.22362 3.24066 3.28407 3.29599 3.53066 4.01749 4.30084 4.35739 4.44588 4.50848 4.64074 4.76327 4.78500 4.88977 4.94625 5.07359 5.14766 5.15145 5.25720 5.28586 5.43717 5.55926 5.59065 5.67442 5.71820 6.06696 6.14467 6.20625 6.32624 6.37261 6.38436 6.58621 6.60976 6.96043 7.08266 7.15109 7.28876 7.35871 7.52166 7.55512 7.66286 7.81875 7.83955 8.12460 8.56158 8.70543 9.00484 9.40744 10.88471 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.002212 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.880238 B =12656.290232 C =13267.192655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.469 3.531 15 O -0.549 6.549 16 C 0.084 3.916 17 H 0.106 0.894 18 N -0.812 5.812 19 C -0.100 4.100 20 C 0.466 3.534 21 O -0.482 6.482 22 O -0.357 6.357 23 C 0.109 3.891 24 C -0.096 4.096 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.112 4.112 28 C -0.124 4.124 29 C -0.095 4.095 30 H 0.037 0.963 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.389 0.611 37 H 0.347 0.653 38 H 0.344 0.656 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 0.870 22.337 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.251 3.749 15 O -0.428 6.428 16 C -0.032 4.032 17 H 0.124 0.876 18 N -0.341 5.341 19 C -0.138 4.138 20 C 0.308 3.692 21 O -0.367 6.367 22 O -0.275 6.275 23 C 0.036 3.964 24 C -0.096 4.096 25 C -0.113 4.113 26 C -0.142 4.142 27 C -0.130 4.130 28 C -0.142 4.142 29 C -0.113 4.113 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.979 1.272 22.310 24.898 hybrid contribution 1.440 -0.315 -0.729 1.645 sum -9.539 0.957 21.581 23.614 Atomic orbital electron populations 1.21833 0.98376 0.98078 1.01070 1.21932 0.92556 0.99760 1.02383 1.18805 0.94263 0.89215 0.81021 0.93393 1.21190 0.90689 1.39242 1.06360 0.92127 1.24886 0.98641 0.94752 0.95360 1.69875 1.35272 1.37443 1.09324 0.86514 0.84809 0.78340 0.77479 1.20129 1.21124 1.20183 1.46625 1.14711 1.55082 1.18527 1.21478 0.83210 0.79905 0.90292 1.90684 1.51577 1.59801 1.40714 1.21345 0.96384 0.93311 0.92185 0.87624 1.59135 1.06878 1.13341 1.54748 1.21307 1.05383 0.98589 0.88531 1.23452 0.73852 0.86346 0.85589 1.90694 1.46855 1.15646 1.83535 1.86581 1.78631 1.42516 1.19785 1.21745 1.01793 0.92573 0.80303 1.19562 0.93862 0.99356 0.96802 1.21121 0.95223 0.97337 0.97653 1.21171 0.99819 0.97106 0.96095 1.21245 0.93301 0.99305 0.99136 1.21178 0.96185 0.98257 0.98550 1.21125 0.99412 0.95739 0.95049 0.94423 0.95779 0.93233 0.94955 0.88270 0.92466 0.77879 0.83972 0.84247 0.87268 0.86864 0.90333 0.90280 0.85719 0.85741 0.85893 0.85715 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.58 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.48 2.24 -69.08 -0.15 6.33 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.62 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.70 -13.50 5.02 -54.94 -0.28 -13.78 16 14 C 0.47 8.41 5.64 -10.99 -0.06 8.34 16 15 O -0.55 -11.65 13.39 5.56 0.07 -11.57 16 16 C 0.08 1.18 2.71 -68.86 -0.19 0.99 16 17 H 0.11 1.45 7.95 -51.93 -0.41 1.04 16 18 N -0.81 -11.22 8.13 -5.65 -0.05 -11.26 16 19 C -0.10 -1.21 5.44 -27.88 -0.15 -1.36 16 20 C 0.47 5.99 7.82 36.00 0.28 6.27 16 21 O -0.48 -7.27 15.10 -18.75 -0.28 -7.56 16 22 O -0.36 -4.25 10.20 -39.25 -0.40 -4.65 16 23 C 0.11 1.09 5.59 36.01 0.20 1.29 16 24 C -0.10 -0.89 5.52 -104.62 -0.58 -1.47 16 25 C -0.10 -0.80 9.70 -39.58 -0.38 -1.19 16 26 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 27 C -0.11 -0.79 10.05 -39.59 -0.40 -1.19 16 28 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 29 C -0.10 -0.81 9.70 -39.58 -0.38 -1.19 16 30 H 0.04 0.75 5.64 -51.93 -0.29 0.46 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.39 6.50 8.54 -40.82 -0.35 6.16 16 37 H 0.35 4.73 9.06 -39.29 -0.36 4.38 16 38 H 0.34 4.72 8.58 -39.29 -0.34 4.38 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -31.03 392.70 -9.29 -40.31 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -7.04 Total: 14.84 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.84 Total: -3.88 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.30 Total: -48.66 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.61 Total: -23.79 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.03 -9.29 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381892227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.304 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds