Wall clock time and date at job start Tue Mar 31 2020 18:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47314 * 40.00488 * 16 14 13 18 18 N 1.46907 * 109.47040 * 159.99916 * 16 14 13 19 19 C 1.53003 * 109.47637 * 280.00343 * 16 14 13 20 20 C 1.50698 * 109.47425 * 174.99997 * 19 16 14 21 21 O 1.20827 * 119.99612 * 359.97438 * 20 19 16 22 22 O 1.34228 * 120.00091 * 180.02562 * 20 19 16 23 23 C 1.45195 * 116.99937 * 179.97438 * 22 20 19 24 24 C 1.50701 * 109.47157 * 179.97438 * 23 22 20 25 25 C 1.38243 * 120.00007 * 269.72924 * 24 23 22 26 26 C 1.38231 * 119.99662 * 179.76514 * 25 24 23 27 27 C 1.38231 * 120.00167 * 0.50510 * 26 25 24 28 28 C 1.38231 * 120.00112 * 359.74652 * 27 26 25 29 29 C 1.38231 * 119.99959 * 89.99947 * 24 23 22 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 37 37 H 1.00896 * 111.00011 * 296.04689 * 18 16 14 38 38 H 1.00901 * 110.99605 * 60.00507 * 18 16 14 39 39 H 1.08999 * 109.46611 * 294.99945 * 19 16 14 40 40 H 1.08998 * 109.46677 * 54.99576 * 19 16 14 41 41 H 1.08994 * 109.47252 * 299.99856 * 23 22 20 42 42 H 1.09005 * 109.47372 * 60.00155 * 23 22 20 43 43 H 1.07998 * 119.99659 * 359.97438 * 25 24 23 44 44 H 1.08005 * 119.99841 * 180.23083 * 26 25 24 45 45 H 1.08006 * 120.00019 * 179.73138 * 27 26 25 46 46 H 1.08002 * 120.00272 * 179.97438 * 28 27 26 47 47 H 1.08000 * 119.99970 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.8859 3.8921 3.0534 18 7 -1.0761 4.2626 2.3999 19 6 -0.4028 2.2793 3.6690 20 6 -0.6841 2.9395 4.9942 21 8 -0.5470 4.1338 5.1152 22 8 -1.0860 2.2005 6.0402 23 6 -1.3380 2.9032 7.2856 24 6 -1.7776 1.9183 8.3380 25 6 -3.1207 1.6344 8.5012 26 6 -3.5234 0.7273 9.4634 27 6 -2.5840 0.1119 10.2693 28 6 -1.2415 0.3996 10.1097 29 6 -0.8382 1.3028 9.1440 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8292 -0.0609 -2.9500 36 1 2.2719 2.1231 1.9979 37 1 -0.7917 5.0085 1.7828 38 1 -1.8765 3.7723 2.0298 39 1 -1.3056 1.7850 3.3104 40 1 0.3908 1.5422 3.7915 41 1 -0.4257 3.4018 7.6125 42 1 -2.1223 3.6446 7.1322 43 1 -3.8549 2.1189 7.8747 44 1 -4.5724 0.5027 9.5883 45 1 -2.8991 -0.5936 11.0240 46 1 -0.5075 -0.0809 10.7397 47 1 0.2107 1.5276 9.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381892227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:11 Heat of formation + Delta-G solvation = -126.214102 kcal Electronic energy + Delta-G solvation = -28175.826172 eV Core-core repulsion = 24129.325295 eV Total energy + Delta-G solvation = -4046.500877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66013 -40.83315 -39.99525 -37.68270 -37.07783 -35.62875 -34.29706 -33.16806 -32.71862 -31.81923 -30.88609 -29.06653 -27.57180 -25.88418 -24.61959 -23.51083 -22.54031 -22.08094 -21.50818 -20.97813 -19.28257 -18.41628 -18.21679 -17.84676 -17.45771 -17.23401 -17.02206 -16.66220 -16.22822 -16.07975 -15.85285 -15.67914 -15.08559 -14.73950 -14.56718 -14.30861 -14.28092 -14.00024 -13.82979 -13.79582 -13.48236 -13.21648 -13.16309 -12.96840 -12.89547 -12.65698 -12.47727 -12.18009 -12.06332 -12.05104 -12.02754 -11.60647 -11.56929 -11.45271 -11.13488 -11.02447 -10.53439 -9.84449 -9.82625 -9.70292 -9.63086 -8.15757 -6.33044 0.21373 0.48103 1.29441 1.45051 1.46037 1.53469 1.53864 1.94703 2.36436 2.63934 2.92186 3.13583 3.38644 3.63560 3.73145 3.82841 3.89869 4.08116 4.09265 4.19410 4.25420 4.28139 4.43793 4.51535 4.55274 4.59522 4.61281 4.66603 4.72343 4.78199 5.02456 5.07752 5.13461 5.28087 5.41825 5.45035 5.54407 5.57076 5.59654 5.60597 5.61565 5.80619 5.90367 6.00261 6.06541 6.18472 6.39383 6.75090 6.83595 6.95506 7.33367 7.53593 8.88724 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.002212 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.880238 B =12656.290232 C =13267.192655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.699 5.699 14 C 0.472 3.528 15 O -0.582 6.582 16 C 0.099 3.901 17 H 0.115 0.885 18 N -0.809 5.809 19 C -0.097 4.097 20 C 0.474 3.526 21 O -0.508 6.508 22 O -0.359 6.359 23 C 0.109 3.891 24 C -0.114 4.114 25 C -0.109 4.109 26 C -0.130 4.130 27 C -0.115 4.115 28 C -0.130 4.130 29 C -0.108 4.108 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.022 0.978 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.348 0.652 38 H 0.346 0.654 39 H 0.117 0.883 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.131 0.869 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 0.259 24.768 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.256 3.744 15 O -0.463 6.463 16 C -0.017 4.017 17 H 0.132 0.868 18 N -0.338 5.338 19 C -0.135 4.135 20 C 0.317 3.683 21 O -0.395 6.395 22 O -0.277 6.277 23 C 0.036 3.964 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.148 4.148 29 C -0.126 4.126 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.149 0.851 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.162 0.838 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.731 0.668 24.791 27.022 hybrid contribution 1.284 -0.112 -1.429 1.924 sum -9.448 0.556 23.362 25.206 Atomic orbital electron populations 1.21677 0.96797 0.99185 1.00342 1.21774 0.93884 0.98993 1.01364 1.18361 0.93458 0.89308 0.81490 0.98539 1.21568 0.91644 1.38872 1.06627 0.91100 1.25734 1.03064 0.94479 0.95123 1.70032 1.37026 1.38327 1.09828 0.85481 0.79468 0.78358 0.77529 1.18889 1.21349 1.19845 1.46382 1.15720 1.55227 1.17446 1.22196 0.82098 0.78848 0.91257 1.90677 1.52421 1.60826 1.42374 1.21257 0.96780 0.93390 0.90279 0.86756 1.59189 1.06765 1.13191 1.54610 1.21293 1.06383 0.98115 0.87734 1.23418 0.73169 0.85892 0.85851 1.90689 1.48140 1.16658 1.84003 1.86568 1.78223 1.42666 1.20244 1.21868 1.02004 0.92870 0.79698 1.19613 0.94530 1.00079 0.97151 1.21320 0.95145 0.97891 0.98330 1.21474 1.01084 0.96600 0.95647 1.21604 0.93134 0.99256 0.99274 1.21482 0.97018 0.97908 0.98405 1.21327 0.99768 0.96121 0.95412 0.93188 0.93662 0.95834 0.93763 0.91308 0.92661 0.76137 0.83906 0.84083 0.86521 0.85065 0.90027 0.90259 0.85149 0.83794 0.83581 0.83784 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.51 71.98 0.61 -4.58 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.53 16 3 C 0.28 13.58 2.24 44.24 0.10 13.67 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -28.15 8.73 25.60 0.22 -27.93 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.91 -51.40 11.29 21.45 0.24 -51.16 16 9 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 13 N -0.70 -26.45 5.02 -446.11 -2.24 -28.69 16 14 C 0.47 16.61 5.64 87.66 0.49 17.10 16 15 O -0.58 -24.88 13.39 -3.04 -0.04 -24.92 16 16 C 0.10 2.64 2.71 44.17 0.12 2.76 16 17 H 0.11 2.92 7.95 -2.39 -0.02 2.90 16 18 N -0.81 -21.49 8.13 -171.79 -1.40 -22.89 16 19 C -0.10 -2.16 5.44 29.85 0.16 -2.00 16 20 C 0.47 11.43 7.82 71.24 0.56 11.99 16 21 O -0.51 -14.67 15.10 21.96 0.33 -14.34 16 22 O -0.36 -8.08 10.20 -51.40 -0.52 -8.60 16 23 C 0.11 2.09 5.59 71.24 0.40 2.49 16 24 C -0.11 -2.00 5.52 -19.86 -0.11 -2.11 16 25 C -0.11 -1.72 9.70 22.27 0.22 -1.50 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 27 C -0.11 -1.36 10.05 22.27 0.22 -1.13 16 28 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 29 C -0.11 -1.70 9.70 22.27 0.22 -1.48 16 30 H 0.05 1.96 5.64 -2.39 -0.01 1.94 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.02 1.08 7.85 -2.38 -0.02 1.06 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 3.69 5.95 -2.39 -0.01 3.67 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.40 12.87 8.54 -92.71 -0.79 12.08 16 37 H 0.35 9.23 9.06 -89.70 -0.81 8.42 16 38 H 0.35 9.15 8.58 -89.69 -0.77 8.38 16 39 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 42 H 0.08 1.49 8.08 -2.38 -0.02 1.47 16 43 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 44 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 45 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 47 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -67.49 392.70 1.31 -66.18 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -1.36 Total: 40.84 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.28 Total: 0.14 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.39 Total: -102.73 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -0.23 Total: -47.86 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -67.49 1.31 -66.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381892227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.035 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds