Wall clock time and date at job start Tue Mar 31 2020 18:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 N 1.46501 * 109.47539 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34599 * 89.99590 * 4 3 2 6 6 C 1.54477 * 105.47112 * 162.98686 * 5 4 3 7 7 H 1.09001 * 110.97270 * 267.25996 * 6 5 4 8 8 C 1.50703 * 110.96993 * 143.53737 * 6 5 4 9 9 O 1.21280 * 119.99635 * 336.77437 * 8 6 5 10 10 N 1.34777 * 119.99914 * 156.77933 * 8 6 5 11 11 C 1.46493 * 120.00266 * 4.89059 * 10 8 6 12 12 C 1.50707 * 109.46903 * 90.00280 * 11 10 8 13 13 H 1.08001 * 119.99932 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99931 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99870 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99969 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47418 * 89.99668 * 16 14 12 18 18 H 1.48496 * 109.47138 * 210.00032 * 16 14 12 19 19 H 1.48505 * 109.46974 * 329.99877 * 16 14 12 20 20 C 1.46503 * 119.99478 * 184.89331 * 10 8 6 21 21 C 1.50699 * 109.47118 * 86.31003 * 20 10 8 22 22 C 1.34517 * 125.78990 * 88.84810 * 21 20 10 23 23 C 1.41385 * 106.84090 * 180.02562 * 22 21 20 24 24 C 1.34514 * 106.84218 * 359.97438 * 23 22 21 25 25 O 1.34301 * 125.78931 * 268.54239 * 21 20 10 26 26 C 1.54633 * 101.76730 * 25.41883 * 6 5 4 27 27 C 1.34413 * 124.34951 * 269.70625 * 4 3 2 28 28 O 1.21287 * 124.94447 * 0.37596 * 27 4 3 29 29 H 1.08991 * 109.47441 * 300.00322 * 1 2 3 30 30 H 1.09002 * 109.46544 * 60.00649 * 1 2 3 31 31 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47347 * 239.99857 * 2 1 3 33 33 H 1.09003 * 109.47060 * 119.99918 * 2 1 3 34 34 H 1.09003 * 109.47025 * 299.99939 * 3 2 1 35 35 H 1.09000 * 109.47065 * 59.99685 * 3 2 1 36 36 H 1.09000 * 110.25101 * 281.98651 * 5 4 3 37 37 H 1.09001 * 110.24628 * 43.98991 * 5 4 3 38 38 H 1.08999 * 109.47460 * 209.99759 * 11 10 8 39 39 H 1.09002 * 109.47441 * 330.00500 * 11 10 8 40 40 H 0.97004 * 119.99643 * 179.97438 * 15 14 12 41 41 H 1.08998 * 109.46626 * 206.30669 * 20 10 8 42 42 H 1.08994 * 109.47620 * 326.30996 * 20 10 8 43 43 H 1.07996 * 126.57972 * 0.03020 * 22 21 20 44 44 H 1.08001 * 126.57756 * 179.97438 * 23 22 21 45 45 H 1.07997 * 125.79150 * 180.02562 * 24 23 22 46 46 H 1.09001 * 110.48701 * 93.87377 * 26 6 5 47 47 H 1.08997 * 110.48863 * 216.52824 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3336 1.4423 -1.2107 6 6 5.7413 1.8781 -0.7473 7 1 5.8674 2.9564 -0.8441 8 6 6.8122 1.1420 -1.5104 9 8 6.5624 0.0743 -2.0285 10 7 8.0476 1.6702 -1.6170 11 6 8.3803 2.9053 -0.9028 12 6 8.9173 2.5661 0.4639 13 1 9.0026 1.5338 0.7697 14 6 9.2996 3.5737 1.3239 15 7 9.1962 4.8308 0.9513 16 14 9.9659 3.1534 3.0176 17 1 11.4406 2.9950 2.9442 18 1 9.6320 4.2461 3.9661 19 1 9.3547 1.8847 3.4890 20 6 9.0577 1.0092 -2.4471 21 6 8.9216 1.4784 -3.8727 22 6 9.5319 2.5502 -4.4098 23 6 9.1241 2.6190 -5.7618 24 6 8.2895 1.5849 -5.9702 25 8 8.1751 0.8942 -4.8240 26 6 5.7295 1.4527 0.7394 27 6 4.2630 1.4484 1.1106 28 8 3.8337 1.4479 2.2450 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.3713 0.4419 -1.6418 37 1 3.9392 2.1524 -1.9376 38 1 9.1352 3.4569 -1.4631 39 1 7.4846 3.5178 -0.7995 40 1 9.4649 5.5397 1.5565 41 1 10.0520 1.2577 -2.0761 42 1 8.9133 -0.0702 -2.4046 43 1 10.2044 3.2279 -3.9051 44 1 9.4250 3.3597 -6.4879 45 1 7.7984 1.3476 -6.9023 46 1 6.1591 0.4576 0.8548 47 1 6.2720 2.1764 1.3476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413278285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:05 Heat of formation + Delta-G solvation = -56.686991 kcal Electronic energy + Delta-G solvation = -29662.172141 eV Core-core repulsion = 25618.686186 eV Total energy + Delta-G solvation = -4043.485955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.25633 -40.52125 -38.88314 -36.16506 -35.34413 -34.67619 -32.90905 -32.57868 -31.51654 -30.20948 -27.48009 -27.40340 -26.50627 -25.42365 -23.24167 -22.39482 -21.72215 -21.42137 -20.28308 -19.24242 -18.46091 -17.34539 -16.98918 -16.59327 -16.39753 -16.00945 -15.61090 -15.27143 -14.91368 -14.70460 -14.50863 -14.38772 -13.80463 -13.68068 -13.37164 -13.28921 -12.71995 -12.63064 -12.54775 -12.50177 -12.38268 -12.26305 -12.19375 -11.83424 -11.62866 -11.43729 -11.37366 -11.04957 -11.03726 -10.96891 -10.75702 -10.67991 -10.23410 -9.89290 -9.66767 -9.63663 -9.23226 -8.63376 -8.52496 -8.25898 -7.98891 -6.26584 -4.34508 1.94285 2.81148 2.86221 3.00498 3.17163 3.20765 3.29728 3.32061 3.39412 3.81625 4.28100 4.59719 4.76296 4.90298 4.93286 5.00565 5.08070 5.09542 5.16758 5.27322 5.28347 5.31526 5.36862 5.50995 5.56887 5.62839 5.71900 5.72930 5.87946 5.93476 5.96756 6.01871 6.04137 6.16998 6.20539 6.23886 6.34867 6.41394 6.56420 6.71181 6.75788 7.05497 7.28988 7.31304 7.44347 7.67650 7.93672 8.09446 8.42759 8.64669 8.79755 9.34245 10.80099 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007465 B = 0.004926 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.839515 B = 5682.779803 C = 8827.258371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.127 3.873 4 N -0.622 5.622 5 C 0.115 3.885 6 C -0.115 4.115 7 H 0.116 0.884 8 C 0.532 3.468 9 O -0.559 6.559 10 N -0.587 5.587 11 C 0.236 3.764 12 C -0.541 4.541 13 H 0.064 0.936 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.270 1.270 20 C 0.196 3.804 21 C -0.017 4.017 22 C -0.201 4.201 23 C -0.217 4.217 24 C -0.052 4.052 25 O -0.167 6.167 26 C -0.130 4.130 27 C 0.522 3.478 28 O -0.537 6.537 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.266 0.734 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.196 0.804 46 H 0.104 0.896 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 -4.185 -9.696 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.005 3.995 4 N -0.356 5.356 5 C -0.008 4.008 6 C -0.136 4.136 7 H 0.134 0.866 8 C 0.319 3.681 9 O -0.439 6.439 10 N -0.317 5.317 11 C 0.116 3.884 12 C -0.580 4.580 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.195 1.195 20 C 0.072 3.928 21 C -0.068 4.068 22 C -0.221 4.221 23 C -0.236 4.236 24 C -0.120 4.120 25 O -0.062 6.062 26 C -0.170 4.170 27 C 0.311 3.689 28 O -0.414 6.414 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.167 0.833 44 H 0.161 0.839 45 H 0.213 0.787 46 H 0.122 0.878 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.248 -4.782 -9.234 13.273 hybrid contribution 0.646 0.375 0.648 0.989 sum -7.602 -4.407 -8.586 12.285 Atomic orbital electron populations 1.21687 0.95207 1.01857 1.01828 1.21927 0.95981 0.97401 1.02838 1.21388 0.78280 0.96883 1.02913 1.48325 1.05920 1.73834 1.07502 1.22043 0.88728 1.03195 0.86810 1.22135 0.93015 1.02758 0.95734 0.86579 1.19950 0.83357 0.85120 0.79653 1.90627 1.81504 1.22170 1.49597 1.48251 1.10004 1.28049 1.45398 1.19569 0.97477 0.79912 0.91401 1.21443 1.44023 0.93539 0.98968 0.91800 1.24904 0.95164 0.94770 0.98620 1.69911 1.46857 0.98976 1.36809 0.86561 0.79333 0.78513 0.83586 1.20511 1.21016 1.19487 1.19695 0.93906 0.98531 0.80619 1.23212 0.95836 0.95878 0.91905 1.21680 1.05561 1.00039 0.94846 1.21800 1.02878 1.01459 0.97450 1.23964 1.03443 0.94915 0.89694 1.84106 1.55839 1.48060 1.18211 1.22238 0.93853 1.05752 0.95202 1.21053 0.89396 0.74277 0.84166 1.90683 1.78774 1.50717 1.21178 0.92550 0.92650 0.92536 0.91606 0.91548 0.90568 0.90147 0.89285 0.90516 0.94345 0.94081 0.92391 0.86790 0.89227 0.83344 0.83872 0.78702 0.87777 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.14 -1.59 6.26 -26.73 -0.17 -1.76 16 3 C 0.13 1.54 5.93 -4.04 -0.02 1.51 16 4 N -0.62 -9.23 2.93 -172.42 -0.51 -9.74 16 5 C 0.12 1.66 6.85 -3.13 -0.02 1.63 16 6 C -0.11 -1.92 2.78 -90.14 -0.25 -2.17 16 7 H 0.12 1.95 6.18 -51.93 -0.32 1.63 16 8 C 0.53 9.96 6.75 -10.98 -0.07 9.88 16 9 O -0.56 -11.37 15.26 5.56 0.08 -11.29 16 10 N -0.59 -11.12 2.45 -176.44 -0.43 -11.56 16 11 C 0.24 5.01 5.03 -5.19 -0.03 4.99 16 12 C -0.54 -12.73 8.95 -34.44 -0.31 -13.04 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -23.06 13.29 55.43 0.74 -22.32 16 16 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.20 3.35 5.94 -5.19 -0.03 3.32 16 21 C -0.02 -0.28 6.88 -35.62 -0.25 -0.52 16 22 C -0.20 -3.11 10.81 -39.70 -0.43 -3.54 16 23 C -0.22 -2.91 10.91 -39.70 -0.43 -3.35 16 24 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 25 O -0.17 -2.78 10.65 5.69 0.06 -2.72 16 26 C -0.13 -2.31 6.35 -26.74 -0.17 -2.48 16 27 C 0.52 9.36 8.02 -10.86 -0.09 9.28 16 28 O -0.54 -11.23 17.59 5.55 0.10 -11.13 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.03 7.92 -51.93 -0.41 0.61 16 36 H 0.09 1.35 6.88 -51.93 -0.36 0.99 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.04 0.91 5.81 -51.93 -0.30 0.61 16 40 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.11 1.82 8.04 -51.93 -0.42 1.40 16 42 H 0.09 1.53 7.47 -51.93 -0.39 1.14 16 43 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 44 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 46 H 0.10 1.86 7.89 -51.93 -0.41 1.45 16 47 H 0.13 2.43 7.77 -51.93 -0.40 2.03 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -29.72 395.27 -7.86 -37.58 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.20 Total: 6.32 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.64 Total: 4.13 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.20 Total: -43.62 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.24 Total: -25.14 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.72 -7.86 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413278285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.104 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds