Wall clock time and date at job start Tue Mar 31 2020 18:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 N 1.46501 * 109.47539 * 179.97438 * 3 2 1 5 5 C 1.46760 * 124.34599 * 89.99590 * 4 3 2 6 6 C 1.54477 * 105.47112 * 162.98686 * 5 4 3 7 7 H 1.09001 * 110.97270 * 267.25996 * 6 5 4 8 8 C 1.50703 * 110.96993 * 143.53737 * 6 5 4 9 9 O 1.21280 * 119.99635 * 336.77437 * 8 6 5 10 10 N 1.34777 * 119.99914 * 156.77933 * 8 6 5 11 11 C 1.46493 * 120.00266 * 4.89059 * 10 8 6 12 12 C 1.50707 * 109.46903 * 90.00280 * 11 10 8 13 13 H 1.08001 * 119.99932 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99931 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99870 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99969 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47418 * 89.99668 * 16 14 12 18 18 H 1.48496 * 109.47138 * 210.00032 * 16 14 12 19 19 H 1.48505 * 109.46974 * 329.99877 * 16 14 12 20 20 C 1.46503 * 119.99478 * 184.89331 * 10 8 6 21 21 C 1.50699 * 109.47118 * 86.31003 * 20 10 8 22 22 C 1.34517 * 125.78990 * 88.84810 * 21 20 10 23 23 C 1.41385 * 106.84090 * 180.02562 * 22 21 20 24 24 C 1.34514 * 106.84218 * 359.97438 * 23 22 21 25 25 O 1.34301 * 125.78931 * 268.54239 * 21 20 10 26 26 C 1.54633 * 101.76730 * 25.41883 * 6 5 4 27 27 C 1.34413 * 124.34951 * 269.70625 * 4 3 2 28 28 O 1.21287 * 124.94447 * 0.37596 * 27 4 3 29 29 H 1.08991 * 109.47441 * 300.00322 * 1 2 3 30 30 H 1.09002 * 109.46544 * 60.00649 * 1 2 3 31 31 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47347 * 239.99857 * 2 1 3 33 33 H 1.09003 * 109.47060 * 119.99918 * 2 1 3 34 34 H 1.09003 * 109.47025 * 299.99939 * 3 2 1 35 35 H 1.09000 * 109.47065 * 59.99685 * 3 2 1 36 36 H 1.09000 * 110.25101 * 281.98651 * 5 4 3 37 37 H 1.09001 * 110.24628 * 43.98991 * 5 4 3 38 38 H 1.08999 * 109.47460 * 209.99759 * 11 10 8 39 39 H 1.09002 * 109.47441 * 330.00500 * 11 10 8 40 40 H 0.97004 * 119.99643 * 179.97438 * 15 14 12 41 41 H 1.08998 * 109.46626 * 206.30669 * 20 10 8 42 42 H 1.08994 * 109.47620 * 326.30996 * 20 10 8 43 43 H 1.07996 * 126.57972 * 0.03020 * 22 21 20 44 44 H 1.08001 * 126.57756 * 179.97438 * 23 22 21 45 45 H 1.07997 * 125.79150 * 180.02562 * 24 23 22 46 46 H 1.09001 * 110.48701 * 93.87377 * 26 6 5 47 47 H 1.08997 * 110.48863 * 216.52824 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3336 1.4423 -1.2107 6 6 5.7413 1.8781 -0.7473 7 1 5.8674 2.9564 -0.8441 8 6 6.8122 1.1420 -1.5104 9 8 6.5624 0.0743 -2.0285 10 7 8.0476 1.6702 -1.6170 11 6 8.3803 2.9053 -0.9028 12 6 8.9173 2.5661 0.4639 13 1 9.0026 1.5338 0.7697 14 6 9.2996 3.5737 1.3239 15 7 9.1962 4.8308 0.9513 16 14 9.9659 3.1534 3.0176 17 1 11.4406 2.9950 2.9442 18 1 9.6320 4.2461 3.9661 19 1 9.3547 1.8847 3.4890 20 6 9.0577 1.0092 -2.4471 21 6 8.9216 1.4784 -3.8727 22 6 9.5319 2.5502 -4.4098 23 6 9.1241 2.6190 -5.7618 24 6 8.2895 1.5849 -5.9702 25 8 8.1751 0.8942 -4.8240 26 6 5.7295 1.4527 0.7394 27 6 4.2630 1.4484 1.1106 28 8 3.8337 1.4479 2.2450 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.3713 0.4419 -1.6418 37 1 3.9392 2.1524 -1.9376 38 1 9.1352 3.4569 -1.4631 39 1 7.4846 3.5178 -0.7995 40 1 9.4649 5.5397 1.5565 41 1 10.0520 1.2577 -2.0761 42 1 8.9133 -0.0702 -2.4046 43 1 10.2044 3.2279 -3.9051 44 1 9.4250 3.3597 -6.4879 45 1 7.7984 1.3476 -6.9023 46 1 6.1591 0.4576 0.8548 47 1 6.2720 2.1764 1.3476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413278285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:04 Heat of formation + Delta-G solvation = -72.384209 kcal Electronic energy + Delta-G solvation = -29662.852824 eV Core-core repulsion = 25618.686186 eV Total energy + Delta-G solvation = -4044.166638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.41570 -41.91494 -40.36275 -37.56229 -36.90475 -35.77021 -34.64928 -33.82084 -32.72047 -31.48776 -29.13661 -28.82103 -27.61354 -26.63899 -24.97747 -23.72358 -22.70142 -22.56604 -21.46776 -20.55032 -19.93701 -18.76359 -18.54410 -17.99266 -17.83506 -17.35904 -16.89761 -16.56817 -16.43511 -16.10277 -15.94397 -15.58001 -15.14060 -14.78816 -14.75873 -14.54225 -14.32855 -13.93292 -13.84997 -13.82057 -13.65881 -13.52021 -13.23950 -13.07486 -13.01054 -12.75291 -12.69772 -12.57256 -12.47096 -12.30718 -12.20689 -11.96338 -11.70377 -11.65550 -11.14795 -10.82526 -10.72947 -10.51930 -9.76747 -9.65350 -9.36588 -8.18351 -6.29619 0.77138 1.41230 1.42144 1.47579 1.52854 1.56925 1.71791 1.94227 2.18622 2.38495 2.46699 3.14113 3.24039 3.47828 3.66414 3.85048 3.90492 3.99491 4.03511 4.10088 4.20257 4.24476 4.34189 4.43011 4.48026 4.55046 4.59651 4.61727 4.65951 4.78735 4.89591 4.92362 4.95564 5.00040 5.08053 5.14480 5.18215 5.24511 5.27714 5.33515 5.56493 5.62610 5.67678 5.79457 5.97333 6.07690 6.28406 6.50275 6.82320 7.04495 7.20302 7.42317 8.87396 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007465 B = 0.004926 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.839515 B = 5682.779803 C = 8827.258371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.611 5.611 5 C 0.124 3.876 6 C -0.111 4.111 7 H 0.116 0.884 8 C 0.531 3.469 9 O -0.574 6.574 10 N -0.589 5.589 11 C 0.252 3.748 12 C -0.537 4.537 13 H 0.057 0.943 14 C 0.032 3.968 15 N -0.915 5.915 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.196 3.804 21 C -0.043 4.043 22 C -0.205 4.205 23 C -0.225 4.225 24 C -0.042 4.042 25 O -0.189 6.189 26 C -0.126 4.126 27 C 0.519 3.481 28 O -0.573 6.573 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.027 0.973 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.148 0.852 44 H 0.171 0.829 45 H 0.238 0.762 46 H 0.098 0.902 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 -4.176 -11.740 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.343 5.343 5 C 0.001 3.999 6 C -0.133 4.133 7 H 0.134 0.866 8 C 0.320 3.680 9 O -0.455 6.455 10 N -0.318 5.318 11 C 0.132 3.868 12 C -0.575 4.575 13 H 0.075 0.925 14 C -0.169 4.169 15 N -0.554 5.554 16 Si 0.767 3.233 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.197 1.197 20 C 0.073 3.927 21 C -0.094 4.094 22 C -0.225 4.225 23 C -0.244 4.244 24 C -0.109 4.109 25 O -0.085 6.085 26 C -0.167 4.167 27 C 0.308 3.692 28 O -0.453 6.453 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.166 0.834 44 H 0.189 0.811 45 H 0.255 0.745 46 H 0.116 0.884 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.368 -4.788 -11.316 15.451 hybrid contribution 0.999 0.341 1.170 1.576 sum -8.369 -4.446 -10.146 13.884 Atomic orbital electron populations 1.21656 0.93078 1.02622 1.02696 1.21876 0.97786 0.96352 1.01695 1.21699 0.76231 0.97893 1.04196 1.48401 1.07195 1.72105 1.06649 1.22073 0.87144 1.03870 0.86819 1.22100 0.94051 1.02452 0.94666 0.86601 1.20199 0.83502 0.84935 0.79408 1.90614 1.81738 1.22822 1.50365 1.48218 1.10644 1.27433 1.45525 1.19200 0.96590 0.80595 0.90402 1.21613 1.43057 0.93023 0.99851 0.92475 1.25435 0.95683 0.94774 1.01053 1.69981 1.48200 0.99552 1.37690 0.85819 0.78954 0.77879 0.80683 1.19980 1.21316 1.19740 1.19705 0.93614 0.98089 0.81317 1.22985 0.97604 0.96996 0.91818 1.21887 1.05053 0.99419 0.96113 1.22140 1.02929 1.02389 0.96911 1.24852 1.02466 0.93837 0.89768 1.84085 1.56196 1.48988 1.19226 1.22094 0.94040 1.04782 0.95748 1.21002 0.89602 0.74289 0.84348 1.90656 1.79251 1.52787 1.22646 0.92598 0.90853 0.91880 0.91288 0.94147 0.87170 0.90927 0.89567 0.87231 0.95524 0.94672 0.92485 0.86366 0.89628 0.83392 0.81139 0.74542 0.88388 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.14 -2.87 6.26 30.59 0.19 -2.68 16 3 C 0.12 2.67 5.93 86.38 0.51 3.18 16 4 N -0.61 -17.44 2.93 -818.00 -2.40 -19.84 16 5 C 0.12 3.32 6.85 86.83 0.59 3.92 16 6 C -0.11 -3.67 2.78 -10.48 -0.03 -3.70 16 7 H 0.12 3.86 6.18 -2.39 -0.01 3.84 16 8 C 0.53 19.83 6.75 87.66 0.59 20.42 16 9 O -0.57 -23.16 15.26 -3.03 -0.05 -23.20 16 10 N -0.59 -22.47 2.45 -830.51 -2.03 -24.50 16 11 C 0.25 10.87 5.03 85.64 0.43 11.30 16 12 C -0.54 -25.56 8.95 25.60 0.23 -25.33 16 13 H 0.06 2.77 7.81 -2.91 -0.02 2.74 16 14 C 0.03 1.57 5.46 84.66 0.46 2.03 16 15 N -0.92 -47.94 13.29 21.45 0.28 -47.65 16 16 Si 0.94 40.90 29.54 68.60 2.03 42.92 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 C 0.20 6.76 5.94 85.63 0.51 7.27 16 21 C -0.04 -1.41 6.88 24.83 0.17 -1.24 16 22 C -0.20 -6.14 10.81 22.19 0.24 -5.90 16 23 C -0.22 -5.49 10.91 22.19 0.24 -5.25 16 24 C -0.04 -0.98 12.09 66.97 0.81 -0.18 16 25 O -0.19 -6.03 10.65 -2.56 -0.03 -6.05 16 26 C -0.13 -4.57 6.35 30.59 0.19 -4.38 16 27 C 0.52 18.78 8.02 87.90 0.70 19.49 16 28 O -0.57 -24.55 17.59 -3.05 -0.05 -24.61 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.77 7.92 -2.39 -0.02 1.75 16 36 H 0.09 2.46 6.88 -2.39 -0.02 2.44 16 37 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.22 8.07 -2.39 -0.02 1.20 16 39 H 0.04 1.57 5.81 -2.39 -0.01 1.56 16 40 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 41 H 0.12 3.85 8.04 -2.39 -0.02 3.83 16 42 H 0.09 2.98 7.47 -2.39 -0.02 2.96 16 43 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 44 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 45 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 46 H 0.10 3.63 7.89 -2.39 -0.02 3.61 16 47 H 0.10 4.23 7.77 -2.39 -0.02 4.21 16 Total: -1.00 -64.33 395.27 5.28 -59.05 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.96 Total: 26.40 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.57 Total: 17.49 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -4.15 Total: -91.99 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.13 Total: -53.86 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -64.33 5.28 -59.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413278285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.336 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds