Wall clock time and date at job start Tue Mar 31 2020 17:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.46294 * 114.00426 * 2 1 4 4 C 1.46847 * 111.00121 * 120.00149 * 3 2 1 5 5 C 1.53044 * 109.51335 * 185.83499 * 4 3 2 6 6 C 1.53117 * 109.27792 * 300.82256 * 5 4 3 7 7 N 1.46494 * 109.52123 * 177.55958 * 6 5 4 8 8 C 1.46502 * 120.00230 * 300.00007 * 7 6 5 9 9 S 1.65606 * 119.99847 * 120.00253 * 7 6 5 10 10 O 1.42099 * 104.27375 * 206.07233 * 9 7 6 11 11 O 1.42098 * 104.27442 * 333.92570 * 9 7 6 12 12 C 1.81400 * 104.45043 * 89.99881 * 9 7 6 13 13 C 1.52996 * 109.46975 * 180.02562 * 12 9 7 14 14 C 1.52998 * 109.47398 * 299.99781 * 13 12 9 15 15 C 1.53001 * 109.47454 * 60.00075 * 13 12 9 16 16 C 1.50705 * 109.46951 * 180.02562 * 13 12 9 17 17 H 1.07996 * 119.99874 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99914 * 179.97438 * 16 13 12 19 19 N 1.31519 * 120.00266 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99989 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47169 * 90.00313 * 20 18 16 22 22 H 1.48499 * 109.47204 * 210.00326 * 20 18 16 23 23 H 1.48497 * 109.47108 * 330.00142 * 20 18 16 24 24 C 1.53127 * 109.15989 * 57.65607 * 6 5 4 25 25 C 1.46830 * 110.98381 * 244.21706 * 3 2 1 26 26 H 1.08998 * 109.47065 * 300.00236 * 1 2 3 27 27 H 1.09002 * 109.46855 * 59.99834 * 1 2 3 28 28 H 1.08997 * 109.47718 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46448 * 65.82221 * 4 3 2 30 30 H 1.08994 * 109.45958 * 305.84586 * 4 3 2 31 31 H 1.09001 * 109.49858 * 60.76701 * 5 4 3 32 32 H 1.09002 * 109.49779 * 180.84687 * 5 4 3 33 33 H 1.09004 * 109.52347 * 297.75632 * 6 5 4 34 34 H 1.08999 * 109.46592 * 90.00458 * 8 7 6 35 35 H 1.08999 * 109.47325 * 209.99634 * 8 7 6 36 36 H 1.08998 * 109.47089 * 330.00109 * 8 7 6 37 37 H 1.09002 * 109.46941 * 300.00265 * 12 9 7 38 38 H 1.09004 * 109.47027 * 60.00185 * 12 9 7 39 39 H 1.09006 * 109.46729 * 59.99820 * 14 13 12 40 40 H 1.08997 * 109.47698 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47402 * 300.00768 * 14 13 12 42 42 H 1.09002 * 109.46914 * 59.99485 * 15 13 12 43 43 H 1.08990 * 109.47245 * 179.97438 * 15 13 12 44 44 H 1.08997 * 109.46654 * 300.00056 * 15 13 12 45 45 H 0.97001 * 119.99977 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.50037 * 62.28538 * 24 6 5 47 47 H 1.08996 * 109.50157 * 182.36309 * 24 6 5 48 48 H 1.08995 * 109.46742 * 54.13780 * 25 3 2 49 49 H 1.09004 * 109.45381 * 294.16115 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.8644 1.5383 1.1872 5 6 3.3510 2.9888 1.2285 6 6 4.1497 3.2904 -0.0426 7 7 4.5687 4.6941 -0.0360 8 6 3.5631 5.7585 0.0101 9 16 6.1790 5.0777 -0.0806 10 8 6.2526 6.3536 0.5406 11 8 6.8245 3.9472 0.4892 12 6 6.5647 5.2072 -1.8484 13 6 8.0428 5.5615 -2.0233 14 6 8.3310 6.8993 -1.3392 15 6 8.9075 4.4688 -1.3913 16 6 8.3630 5.6696 -3.4919 17 1 7.5898 5.5019 -4.2270 18 6 9.6432 5.9826 -3.8971 19 7 10.5850 6.1863 -3.0020 20 14 10.0403 6.1159 -5.7175 21 1 9.8219 7.5131 -6.1708 22 1 11.4585 5.7381 -5.9437 23 1 9.1563 5.2025 -6.4852 24 6 3.2669 3.0256 -1.2655 25 6 2.7827 1.5742 -1.2345 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.7230 0.8683 1.1427 30 1 2.2831 1.3246 2.0841 31 1 2.4932 3.6588 1.2870 32 1 3.9869 3.1345 2.1017 33 1 5.0287 2.6469 -0.0818 34 1 3.3457 6.0081 1.0486 35 1 3.9444 6.6411 -0.5034 36 1 2.6511 5.4183 -0.4804 37 1 6.3598 4.2539 -2.3357 38 1 5.9484 5.9853 -2.2987 39 1 8.0992 6.8215 -0.2769 40 1 9.3839 7.1520 -1.4641 41 1 7.7150 7.6777 -1.7893 42 1 8.7021 3.5157 -1.8787 43 1 9.9604 4.7210 -1.5163 44 1 8.6757 4.3911 -0.3291 45 1 11.4857 6.4061 -3.2871 46 1 2.4079 3.6963 -1.2462 47 1 3.8431 3.1983 -2.1744 48 1 2.1423 1.3864 -2.0962 49 1 3.6418 0.9040 -1.2674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416525080.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:08 Heat of formation + Delta-G solvation = -66.357178 kcal Electronic energy + Delta-G solvation = -29107.090582 eV Core-core repulsion = 25198.629247 eV Total energy + Delta-G solvation = -3908.461335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.29763 -36.84440 -36.61317 -36.28933 -35.33060 -34.59484 -31.68516 -31.16922 -30.27385 -26.92437 -26.63939 -25.86114 -25.73899 -25.24346 -23.36670 -22.85063 -19.82923 -19.43927 -18.51050 -17.52488 -17.42442 -16.16416 -15.97602 -15.74275 -15.41676 -15.32076 -14.80946 -14.61343 -14.38893 -14.07670 -13.93933 -13.62602 -13.22021 -13.16880 -13.02001 -12.67435 -12.52997 -12.45416 -12.43427 -12.07325 -11.73106 -11.56594 -11.45567 -11.28702 -11.10162 -11.09579 -11.05671 -10.93174 -10.71960 -10.60203 -10.38240 -10.29031 -10.20426 -10.11370 -9.67543 -9.59369 -8.96482 -8.95031 -8.63812 -8.42099 -6.05295 -4.17509 0.79354 2.29366 3.04232 3.24268 3.31714 3.33537 4.30197 4.33739 4.38791 4.53071 4.62041 4.70028 4.88625 4.90217 5.04569 5.10149 5.19912 5.23628 5.25706 5.34391 5.38277 5.42898 5.50117 5.53257 5.56947 5.59944 5.64894 5.67654 5.79080 5.81308 5.92894 5.94908 6.25145 6.35826 6.51349 6.65853 6.68136 6.77225 6.77678 6.88482 7.02123 7.29178 7.48088 7.65871 7.95977 8.07514 8.30944 8.81056 9.48090 10.96004 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003266 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.124465 B = 8571.345061 C = 9373.428880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.266 6.266 3 N -0.365 5.365 4 C 0.044 3.956 5 C -0.118 4.118 6 C 0.143 3.857 7 N -1.007 6.007 8 C 0.093 3.907 9 S 2.590 3.410 10 O -0.960 6.960 11 O -0.962 6.962 12 C -0.582 4.582 13 C 0.082 3.918 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.503 4.503 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.127 4.127 25 C 0.043 3.957 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.262 0.738 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.628 -7.239 5.452 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.271 6.271 3 N -0.134 5.134 4 C -0.085 4.085 5 C -0.158 4.158 6 C 0.036 3.964 7 N -0.842 5.842 8 C -0.052 4.052 9 S 2.689 3.311 10 O -0.950 6.950 11 O -0.952 6.952 12 C -0.715 4.715 13 C 0.080 3.920 14 C -0.222 4.222 15 C -0.221 4.221 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.167 4.167 25 C -0.086 4.086 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.192 -6.928 6.290 20.457 hybrid contribution 0.427 -0.396 -1.778 1.871 sum -17.765 -7.324 4.512 19.738 Atomic orbital electron populations 1.22590 0.80823 1.01503 1.00525 1.90687 1.20682 1.18782 1.96901 1.67540 1.34649 1.07911 1.03336 1.22365 0.96140 0.96868 0.93112 1.21928 1.00436 0.94839 0.98596 1.20961 0.98639 0.82083 0.94696 1.57811 1.25057 1.11101 1.90204 1.21394 0.92500 0.89303 1.02008 1.05841 0.71652 0.74127 0.79431 1.93540 1.84532 1.42281 1.74677 1.93528 1.72692 1.52329 1.76676 1.30574 1.10252 1.09686 1.21016 1.17924 0.83372 0.92856 0.97835 1.22278 1.05527 0.97932 0.96419 1.22272 1.05482 0.97784 0.96592 1.20944 0.95210 1.48170 0.89864 0.92312 1.24940 0.96237 0.94892 0.97671 1.69803 1.02283 1.47369 1.32709 0.86537 0.77646 0.78361 0.85102 1.20635 1.21117 1.19946 1.22050 1.00502 0.95128 0.99020 1.22368 0.97278 0.96637 0.92338 0.93799 0.93827 0.89587 0.93141 0.89646 0.90246 0.89823 0.87932 0.92689 0.90967 0.91142 0.86522 0.86441 0.95407 0.88629 0.94484 0.94510 0.88641 0.95376 0.92721 0.89980 0.89622 0.89587 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.51 101.05 1.16 1.50 16 2 O -0.27 -2.98 10.96 -13.92 -0.15 -3.13 16 3 N -0.36 -3.88 4.99 -113.83 -0.57 -4.44 16 4 C 0.04 0.45 5.99 -3.83 -0.02 0.43 16 5 C -0.12 -1.24 5.41 -26.65 -0.14 -1.38 16 6 C 0.14 1.71 2.52 -67.81 -0.17 1.54 16 7 N -1.01 -13.62 3.01 -114.48 -0.34 -13.96 16 8 C 0.09 1.03 9.22 59.85 0.55 1.58 16 9 S 2.59 47.40 4.40 -107.50 -0.47 46.93 16 10 O -0.96 -19.89 14.71 -57.54 -0.85 -20.74 16 11 O -0.96 -19.74 14.19 -57.54 -0.82 -20.55 16 12 C -0.58 -11.15 5.12 37.16 0.19 -10.96 16 13 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 14 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 15 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 16 C -0.50 -13.09 8.01 -34.44 -0.28 -13.37 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 19 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.13 -1.26 5.40 -26.65 -0.14 -1.41 16 25 C 0.04 0.43 5.99 -3.84 -0.02 0.41 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.75 7.60 -51.93 -0.39 0.36 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.37 6.88 -51.93 -0.36 1.01 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 36 H 0.07 0.59 6.37 -51.93 -0.33 0.26 16 37 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 38 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 39 H 0.03 0.65 5.47 -51.93 -0.28 0.36 16 40 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 44 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 45 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.08 0.73 6.57 -51.93 -0.34 0.39 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -31.68 381.17 -8.92 -40.60 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.49 Total: 3.18 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 1.53 Total: -25.60 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.39 Total: -41.92 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -1.82 Total: -44.42 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 47.40 SS G_CDS: -0.47 Total: 46.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.68 -8.92 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416525080.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.761 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds