Wall clock time and date at job start Tue Mar 31 2020 17:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.46294 * 114.00426 * 2 1 4 4 C 1.46847 * 111.00121 * 120.00149 * 3 2 1 5 5 C 1.53044 * 109.51335 * 185.83499 * 4 3 2 6 6 C 1.53117 * 109.27792 * 300.82256 * 5 4 3 7 7 N 1.46494 * 109.52123 * 177.55958 * 6 5 4 8 8 C 1.46502 * 120.00230 * 300.00007 * 7 6 5 9 9 S 1.65606 * 119.99847 * 120.00253 * 7 6 5 10 10 O 1.42099 * 104.27375 * 206.07233 * 9 7 6 11 11 O 1.42098 * 104.27442 * 333.92570 * 9 7 6 12 12 C 1.81400 * 104.45043 * 89.99881 * 9 7 6 13 13 C 1.52996 * 109.46975 * 180.02562 * 12 9 7 14 14 C 1.52998 * 109.47398 * 299.99781 * 13 12 9 15 15 C 1.53001 * 109.47454 * 60.00075 * 13 12 9 16 16 C 1.50705 * 109.46951 * 180.02562 * 13 12 9 17 17 H 1.07996 * 119.99874 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99914 * 179.97438 * 16 13 12 19 19 N 1.31519 * 120.00266 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99989 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47169 * 90.00313 * 20 18 16 22 22 H 1.48499 * 109.47204 * 210.00326 * 20 18 16 23 23 H 1.48497 * 109.47108 * 330.00142 * 20 18 16 24 24 C 1.53127 * 109.15989 * 57.65607 * 6 5 4 25 25 C 1.46830 * 110.98381 * 244.21706 * 3 2 1 26 26 H 1.08998 * 109.47065 * 300.00236 * 1 2 3 27 27 H 1.09002 * 109.46855 * 59.99834 * 1 2 3 28 28 H 1.08997 * 109.47718 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46448 * 65.82221 * 4 3 2 30 30 H 1.08994 * 109.45958 * 305.84586 * 4 3 2 31 31 H 1.09001 * 109.49858 * 60.76701 * 5 4 3 32 32 H 1.09002 * 109.49779 * 180.84687 * 5 4 3 33 33 H 1.09004 * 109.52347 * 297.75632 * 6 5 4 34 34 H 1.08999 * 109.46592 * 90.00458 * 8 7 6 35 35 H 1.08999 * 109.47325 * 209.99634 * 8 7 6 36 36 H 1.08998 * 109.47089 * 330.00109 * 8 7 6 37 37 H 1.09002 * 109.46941 * 300.00265 * 12 9 7 38 38 H 1.09004 * 109.47027 * 60.00185 * 12 9 7 39 39 H 1.09006 * 109.46729 * 59.99820 * 14 13 12 40 40 H 1.08997 * 109.47698 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47402 * 300.00768 * 14 13 12 42 42 H 1.09002 * 109.46914 * 59.99485 * 15 13 12 43 43 H 1.08990 * 109.47245 * 179.97438 * 15 13 12 44 44 H 1.08997 * 109.46654 * 300.00056 * 15 13 12 45 45 H 0.97001 * 119.99977 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.50037 * 62.28538 * 24 6 5 47 47 H 1.08996 * 109.50157 * 182.36309 * 24 6 5 48 48 H 1.08995 * 109.46742 * 54.13780 * 25 3 2 49 49 H 1.09004 * 109.45381 * 294.16115 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.8644 1.5383 1.1872 5 6 3.3510 2.9888 1.2285 6 6 4.1497 3.2904 -0.0426 7 7 4.5687 4.6941 -0.0360 8 6 3.5631 5.7585 0.0101 9 16 6.1790 5.0777 -0.0806 10 8 6.2526 6.3536 0.5406 11 8 6.8245 3.9472 0.4892 12 6 6.5647 5.2072 -1.8484 13 6 8.0428 5.5615 -2.0233 14 6 8.3310 6.8993 -1.3392 15 6 8.9075 4.4688 -1.3913 16 6 8.3630 5.6696 -3.4919 17 1 7.5898 5.5019 -4.2270 18 6 9.6432 5.9826 -3.8971 19 7 10.5850 6.1863 -3.0020 20 14 10.0403 6.1159 -5.7175 21 1 9.8219 7.5131 -6.1708 22 1 11.4585 5.7381 -5.9437 23 1 9.1563 5.2025 -6.4852 24 6 3.2669 3.0256 -1.2655 25 6 2.7827 1.5742 -1.2345 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.7230 0.8683 1.1427 30 1 2.2831 1.3246 2.0841 31 1 2.4932 3.6588 1.2870 32 1 3.9869 3.1345 2.1017 33 1 5.0287 2.6469 -0.0818 34 1 3.3457 6.0081 1.0486 35 1 3.9444 6.6411 -0.5034 36 1 2.6511 5.4183 -0.4804 37 1 6.3598 4.2539 -2.3357 38 1 5.9484 5.9853 -2.2987 39 1 8.0992 6.8215 -0.2769 40 1 9.3839 7.1520 -1.4641 41 1 7.7150 7.6777 -1.7893 42 1 8.7021 3.5157 -1.8787 43 1 9.9604 4.7210 -1.5163 44 1 8.6757 4.3911 -0.3291 45 1 11.4857 6.4061 -3.2871 46 1 2.4079 3.6963 -1.2462 47 1 3.8431 3.1983 -2.1744 48 1 2.1423 1.3864 -2.0962 49 1 3.6418 0.9040 -1.2674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416525080.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:07 Heat of formation + Delta-G solvation = -87.484263 kcal Electronic energy + Delta-G solvation = -29108.006721 eV Core-core repulsion = 25198.629247 eV Total energy + Delta-G solvation = -3909.377474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.15665 -38.16341 -38.13856 -37.65866 -36.87754 -35.49701 -33.63486 -31.96520 -31.12089 -28.40769 -27.70716 -27.59135 -27.25519 -26.66461 -24.16387 -23.75648 -21.30862 -20.66401 -19.81068 -18.83433 -18.30754 -17.88947 -17.28833 -16.99588 -16.66588 -16.42056 -16.19214 -15.78880 -15.31716 -15.10559 -14.80432 -14.75867 -14.67895 -14.44078 -14.39518 -14.01669 -13.84653 -13.74766 -13.37229 -13.20990 -13.16094 -12.93707 -12.87106 -12.78174 -12.56824 -12.48783 -12.23992 -12.22710 -12.16519 -12.11371 -11.99750 -11.83765 -11.58117 -11.54294 -11.29491 -10.91742 -10.62960 -10.42220 -9.89931 -9.76332 -8.03541 -6.22420 -0.64569 1.43747 1.45648 1.53107 1.54190 1.79964 2.43844 2.90112 3.17880 3.22786 3.49287 3.77252 3.82328 3.87635 4.08531 4.09966 4.16060 4.21785 4.29971 4.54073 4.55043 4.58740 4.67310 4.68853 4.71685 4.76502 4.78052 4.82673 4.85314 4.86670 4.88618 4.93682 4.97323 5.02305 5.06503 5.09731 5.15457 5.36359 5.39851 5.48805 5.64033 5.67213 5.72790 5.96172 6.04152 6.10714 6.33433 6.82656 7.46132 8.96305 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003266 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.124465 B = 8571.345061 C = 9373.428880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.288 6.288 3 N -0.364 5.364 4 C 0.045 3.955 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.995 5.995 8 C 0.082 3.918 9 S 2.606 3.394 10 O -0.987 6.987 11 O -0.989 6.989 12 C -0.586 4.586 13 C 0.070 3.930 14 C -0.160 4.160 15 C -0.160 4.160 16 C -0.517 4.517 17 H 0.064 0.936 18 C 0.017 3.983 19 N -0.909 5.909 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.120 4.120 25 C 0.042 3.958 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.104 0.896 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.261 0.739 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.323 -7.521 4.629 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.293 6.293 3 N -0.134 5.134 4 C -0.084 4.084 5 C -0.153 4.153 6 C 0.029 3.971 7 N -0.833 5.833 8 C -0.063 4.063 9 S 2.705 3.295 10 O -0.977 6.977 11 O -0.980 6.980 12 C -0.718 4.718 13 C 0.068 3.932 14 C -0.218 4.218 15 C -0.217 4.217 16 C -0.556 4.556 17 H 0.082 0.918 18 C -0.182 4.182 19 N -0.548 5.548 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.160 4.160 25 C -0.087 4.087 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.122 0.878 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.890 -7.209 5.458 22.763 hybrid contribution 1.181 -0.349 -1.469 1.916 sum -19.709 -7.558 3.990 21.482 Atomic orbital electron populations 1.22772 0.79207 1.02851 1.00942 1.90670 1.22500 1.19104 1.97006 1.67576 1.34491 1.07894 1.03401 1.22355 0.95893 0.96379 0.93729 1.21883 1.00602 0.95331 0.97444 1.21149 0.98614 0.80617 0.96689 1.57404 1.23538 1.12491 1.89846 1.21719 0.92864 0.88613 1.03077 1.05044 0.72787 0.73042 0.78656 1.93497 1.85581 1.43602 1.75018 1.93487 1.74416 1.53063 1.76991 1.30507 1.07259 1.11300 1.22739 1.17904 0.86375 0.92096 0.96806 1.22209 1.03962 0.98726 0.96890 1.22203 1.04227 0.98277 0.97041 1.21310 0.95432 1.47774 0.91120 0.91770 1.25688 0.96352 0.94843 1.01352 1.69949 1.02431 1.48059 1.34315 0.85615 0.77223 0.78396 0.80746 1.20326 1.21364 1.19058 1.22020 1.00641 0.95350 0.97981 1.22405 0.97102 0.96465 0.92737 0.93365 0.93349 0.87831 0.94406 0.88547 0.88590 0.90526 0.89784 0.91990 0.91006 0.87777 0.84773 0.84479 0.95029 0.91113 0.94013 0.94184 0.91118 0.95004 0.92939 0.88201 0.89119 0.88381 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 11.51 113.37 1.30 1.83 16 2 O -0.29 -5.93 10.96 -50.14 -0.55 -6.48 16 3 N -0.36 -6.97 4.99 -514.04 -2.57 -9.54 16 4 C 0.05 0.86 5.99 86.33 0.52 1.38 16 5 C -0.11 -2.15 5.41 30.65 0.17 -1.98 16 6 C 0.14 3.00 2.52 45.07 0.11 3.11 16 7 N -1.00 -24.90 3.01 -516.10 -1.55 -26.46 16 8 C 0.08 1.55 9.22 127.77 1.18 2.73 16 9 S 2.61 93.27 4.40 -56.49 -0.25 93.02 16 10 O -0.99 -40.32 14.71 -127.65 -1.88 -42.19 16 11 O -0.99 -40.63 14.19 -127.65 -1.81 -42.44 16 12 C -0.59 -21.70 5.12 71.98 0.37 -21.33 16 13 C 0.07 3.36 0.52 -52.93 -0.03 3.34 16 14 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 15 C -0.16 -7.95 7.78 71.98 0.56 -7.39 16 16 C -0.52 -26.70 8.01 25.60 0.21 -26.50 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 18 C 0.02 0.90 5.15 84.65 0.44 1.33 16 19 N -0.91 -50.35 9.35 21.45 0.20 -50.15 16 20 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 C -0.12 -2.05 5.40 30.65 0.17 -1.89 16 25 C 0.04 0.75 5.99 86.33 0.52 1.27 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.51 7.60 -2.39 -0.02 1.50 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.20 6.88 -2.38 -0.02 2.18 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.40 7.79 -2.39 -0.02 1.38 16 36 H 0.10 1.29 6.37 -2.39 -0.02 1.27 16 37 H 0.13 4.42 8.14 -2.39 -0.02 4.40 16 38 H 0.14 4.46 8.14 -2.39 -0.02 4.45 16 39 H 0.03 1.50 5.47 -2.38 -0.01 1.48 16 40 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 41 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 44 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 45 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.10 1.37 6.57 -2.39 -0.02 1.35 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -68.03 381.17 0.60 -67.43 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.92 Total: 24.41 kcal Atomic # 6 Polarization: -57.54 SS G_CDS: 6.06 Total: -51.48 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -3.92 Total: -86.15 kcal Atomic # 8 Polarization: -86.87 SS G_CDS: -4.24 Total: -91.11 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 93.27 SS G_CDS: -0.25 Total: 93.02 kcal Total: -68.03 0.60 -67.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416525080.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.053 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds