Wall clock time and date at job start Tue Mar 31 2020 17:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47364 * 2 1 4 4 H 1.09005 * 109.55391 * 304.87233 * 3 2 1 5 5 C 1.53296 * 109.51199 * 184.74847 * 3 2 1 6 6 N 1.47148 * 108.38392 * 187.77275 * 5 3 2 7 7 S 1.65600 * 120.98532 * 230.56217 * 6 5 3 8 8 O 1.42096 * 106.40481 * 203.54099 * 7 6 5 9 9 O 1.42108 * 106.39888 * 336.46031 * 7 6 5 10 10 N 1.65600 * 107.21825 * 89.99826 * 7 6 5 11 11 C 1.46502 * 119.99983 * 90.00342 * 10 7 6 12 12 C 1.53005 * 109.47048 * 94.99855 * 11 10 7 13 13 C 1.46498 * 120.00130 * 270.00508 * 10 7 6 14 14 C 1.50701 * 109.47343 * 94.99648 * 13 10 7 15 15 H 1.08000 * 119.99959 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99845 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00089 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99587 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47060 * 90.00372 * 18 16 14 20 20 H 1.48497 * 109.46745 * 210.00016 * 18 16 14 21 21 H 1.48497 * 109.47060 * 330.00156 * 18 16 14 22 22 C 1.47177 * 118.07589 * 50.50135 * 6 5 3 23 23 C 1.53293 * 108.37437 * 309.54580 * 22 6 5 24 24 H 1.09006 * 109.51285 * 292.27682 * 23 22 6 25 25 C 1.52999 * 109.51557 * 172.17812 * 23 22 6 26 26 C 1.52997 * 109.47317 * 175.10243 * 25 23 22 27 27 O 1.42956 * 109.51319 * 64.99703 * 3 2 1 28 28 H 1.09000 * 109.47023 * 60.00266 * 1 2 3 29 29 H 1.09006 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47222 * 300.00266 * 1 2 3 31 31 H 1.08999 * 109.46756 * 239.99478 * 2 1 3 32 32 H 1.08999 * 109.46846 * 120.00496 * 2 1 3 33 33 H 1.08998 * 109.67890 * 307.49495 * 5 3 2 34 34 H 1.09001 * 109.68652 * 68.05123 * 5 3 2 35 35 H 1.08997 * 109.46931 * 215.00041 * 11 10 7 36 36 H 1.08999 * 109.46910 * 335.00343 * 11 10 7 37 37 H 1.08999 * 109.46867 * 60.00461 * 12 11 10 38 38 H 1.08995 * 109.46813 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.46673 * 300.00022 * 12 11 10 40 40 H 1.09002 * 109.47261 * 215.00025 * 13 10 7 41 41 H 1.09005 * 109.46889 * 334.99652 * 13 10 7 42 42 H 0.96998 * 119.99522 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.72542 * 189.80348 * 22 6 5 44 44 H 1.08993 * 109.64635 * 69.24344 * 22 6 5 45 45 H 1.08996 * 109.46929 * 55.09347 * 25 23 22 46 46 H 1.09002 * 109.46716 * 295.10152 * 25 23 22 47 47 H 1.09002 * 109.47153 * 299.99641 * 26 25 23 48 48 H 1.09001 * 109.46832 * 179.97438 * 26 25 23 49 49 H 1.09004 * 109.47261 * 59.99813 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6080 1.9822 -0.8427 5 6 3.5683 1.4451 -0.1196 6 7 4.0463 2.8237 0.0706 7 16 5.0886 3.5215 -1.0106 8 8 5.7654 4.5537 -0.3066 9 8 5.7630 2.4546 -1.6635 10 7 4.1679 4.2695 -2.1661 11 6 3.7619 5.6659 -1.9885 12 6 4.7545 6.5811 -2.7084 13 6 3.7594 3.5349 -3.3660 14 6 2.3833 2.9571 -3.1571 15 1 1.8647 3.1211 -2.2241 16 6 1.7860 2.2200 -4.1576 17 7 2.4174 2.0207 -5.2940 18 14 0.0799 1.5045 -3.8990 19 1 -0.9411 2.4832 -4.3516 20 1 -0.0548 0.2504 -4.6827 21 1 -0.1204 1.2111 -2.4571 22 6 3.5701 3.5655 1.2493 23 6 2.0419 3.4584 1.3027 24 1 1.6091 4.0057 0.4652 25 6 1.5336 4.0518 2.6181 26 6 0.0036 4.0560 2.6183 27 8 1.6623 2.0825 1.2212 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 3.9975 0.7988 0.6460 34 1 3.8599 1.0886 -1.1075 35 1 2.7656 5.8105 -2.4062 36 1 3.7491 5.9082 -0.9259 37 1 4.7673 6.3388 -3.7710 38 1 4.4521 7.6200 -2.5766 39 1 5.7508 6.4364 -2.2906 40 1 3.7432 4.2129 -4.2193 41 1 4.4672 2.7280 -3.5565 42 1 1.9970 1.5025 -5.9979 43 1 3.8621 4.6124 1.1677 44 1 4.0002 3.1332 2.1527 45 1 1.8999 5.0732 2.7215 46 1 1.8954 3.4500 3.4519 47 1 -0.3581 4.6578 1.7845 48 1 -0.3584 4.4784 3.5556 49 1 -0.3626 3.0345 2.5149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420729836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:16 Heat of formation + Delta-G solvation = -135.492930 kcal Electronic energy + Delta-G solvation = -30684.646376 eV Core-core repulsion = 26773.187090 eV Total energy + Delta-G solvation = -3911.459286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.37193 -36.78666 -36.06102 -35.26068 -34.85926 -34.53804 -32.76814 -32.34447 -29.98447 -29.26176 -26.86103 -26.58219 -24.18153 -23.20302 -22.54203 -21.73837 -20.97822 -20.46195 -18.37122 -17.23034 -16.97208 -16.70413 -16.27009 -15.91062 -15.24656 -14.94946 -14.65134 -14.39679 -13.99496 -13.78401 -13.73972 -13.48940 -13.28504 -13.25516 -12.93988 -12.21073 -12.13699 -12.12463 -12.02329 -11.84391 -11.75486 -11.72347 -11.59312 -11.39529 -11.23877 -11.11803 -11.09761 -11.05092 -10.87521 -10.67101 -10.63437 -10.51773 -10.39028 -10.24776 -9.92654 -9.75259 -9.53250 -8.55324 -8.40965 -8.07364 -6.15976 -4.23373 1.19254 3.19334 3.25408 3.29277 3.38174 3.88242 4.06333 4.30485 4.65589 4.95870 5.02148 5.06621 5.16216 5.17944 5.18610 5.37112 5.37632 5.43721 5.50020 5.54924 5.64820 5.72531 5.74073 5.79627 5.87679 5.91249 5.93688 5.97187 6.02838 6.06761 6.15272 6.19428 6.27447 6.30593 6.32872 6.42319 6.52456 6.60737 6.62936 6.63146 6.82358 7.31962 7.40454 7.53512 7.61515 7.80892 8.10718 8.81093 9.42577 10.91529 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008343 B = 0.008107 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.288707 B = 3453.010295 C = 5273.986935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C 0.072 3.928 4 H 0.090 0.910 5 C 0.104 3.896 6 N -1.007 6.007 7 S 2.783 3.217 8 O -0.997 6.997 9 O -0.976 6.976 10 N -0.991 5.991 11 C 0.131 3.869 12 C -0.170 4.170 13 C 0.245 3.755 14 C -0.539 4.539 15 H 0.064 0.936 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.876 3.124 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.252 1.252 22 C 0.097 3.903 23 C 0.079 3.921 24 H 0.065 0.935 25 C -0.114 4.114 26 C -0.147 4.147 27 O -0.372 6.372 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 2.829 12.515 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C 0.013 3.987 4 H 0.108 0.892 5 C -0.022 4.022 6 N -0.845 5.845 7 S 2.793 3.207 8 O -0.981 6.981 9 O -0.960 6.960 10 N -0.833 5.833 11 C 0.004 3.996 12 C -0.229 4.229 13 C 0.123 3.877 14 C -0.578 4.578 15 H 0.082 0.918 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.704 3.296 19 H -0.209 1.209 20 H -0.212 1.212 21 H -0.177 1.177 22 C -0.029 4.029 23 C 0.019 3.981 24 H 0.083 0.917 25 C -0.152 4.152 26 C -0.205 4.205 27 O -0.292 6.292 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.742 2.603 12.491 12.878 hybrid contribution -1.267 -0.270 -0.350 1.342 sum -3.009 2.333 12.141 12.724 Atomic orbital electron populations 1.21887 0.95519 1.01121 1.02826 1.21447 0.96713 0.94313 1.02443 1.22727 0.93505 0.94518 0.87935 0.89243 1.21987 0.95014 0.81755 1.03445 1.58338 1.65735 1.22852 1.37532 1.01872 0.73702 0.72796 0.72324 1.93526 1.72101 1.58274 1.74173 1.93571 1.71739 1.55993 1.74679 1.57795 1.70795 1.19473 1.35216 1.20969 0.98980 0.80557 0.99065 1.22202 1.00053 0.98887 1.01745 1.19201 0.95632 0.91683 0.81229 1.21552 1.01668 1.33348 1.01266 0.91797 1.24927 0.97671 0.96010 0.95015 1.69929 1.37794 1.39698 1.05129 0.86913 0.84576 0.78778 0.79379 1.20866 1.21189 1.17710 1.21995 0.95200 0.96919 0.88781 1.22440 0.93135 0.84094 0.98385 0.91673 1.21500 0.96843 1.00486 0.96337 1.21686 0.95171 1.02541 1.01082 1.87841 1.79643 1.22865 1.38833 0.91736 0.93299 0.92370 0.90241 0.91638 0.91644 0.87742 0.90231 0.92200 0.92038 0.92332 0.92667 0.94398 0.93258 0.92589 0.89218 0.91029 0.90652 0.91148 0.92843 0.93064 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.81 37.16 0.36 -1.88 16 2 C -0.11 -1.64 5.64 -26.73 -0.15 -1.79 16 3 C 0.07 1.18 2.78 -26.58 -0.07 1.11 16 4 H 0.09 1.71 5.78 -51.93 -0.30 1.41 16 5 C 0.10 1.77 5.86 -3.54 -0.02 1.75 16 6 N -1.01 -17.40 3.40 -113.05 -0.38 -17.79 16 7 S 2.78 55.67 6.07 -107.50 -0.65 55.01 16 8 O -1.00 -20.22 15.91 -57.17 -0.91 -21.13 16 9 O -0.98 -22.64 15.49 -57.17 -0.89 -23.53 16 10 N -0.99 -19.89 2.82 -115.66 -0.33 -20.22 16 11 C 0.13 2.21 6.06 -4.04 -0.02 2.19 16 12 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 13 C 0.24 5.83 5.43 -5.19 -0.03 5.80 16 14 C -0.54 -13.16 9.18 -34.44 -0.32 -13.48 16 15 H 0.06 1.49 5.72 -52.49 -0.30 1.19 16 16 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 18 Si 0.88 19.27 29.54 -169.99 -5.02 14.25 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.25 -5.07 4.59 56.52 0.26 -4.81 16 22 C 0.10 1.40 5.86 -3.52 -0.02 1.38 16 23 C 0.08 1.09 2.78 -26.58 -0.07 1.02 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 C -0.11 -1.23 5.64 -26.73 -0.15 -1.38 16 26 C -0.15 -1.55 9.81 37.16 0.36 -1.19 16 27 O -0.37 -5.72 9.11 -35.23 -0.32 -6.04 16 28 H 0.06 1.05 5.63 -51.93 -0.29 0.75 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.99 7.25 -51.93 -0.38 1.61 16 35 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 36 H 0.06 0.90 7.61 -51.93 -0.40 0.50 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 41 H 0.05 1.31 6.91 -51.93 -0.36 0.95 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.09 1.21 7.25 -51.93 -0.38 0.83 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.73 7.83 -51.93 -0.41 0.33 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -29.44 391.15 -10.54 -39.98 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.83 Total: 4.40 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 0.15 Total: -7.11 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.03 Total: -61.74 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -2.12 Total: -50.69 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.65 Total: 55.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.44 -10.54 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420729836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.509 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds