Wall clock time and date at job start Tue Mar 31 2020 17:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47364 * 2 1 4 4 H 1.09005 * 109.55391 * 304.87233 * 3 2 1 5 5 C 1.53296 * 109.51199 * 184.74847 * 3 2 1 6 6 N 1.47148 * 108.38392 * 187.77275 * 5 3 2 7 7 S 1.65600 * 120.98532 * 230.56217 * 6 5 3 8 8 O 1.42096 * 106.40481 * 203.54099 * 7 6 5 9 9 O 1.42108 * 106.39888 * 336.46031 * 7 6 5 10 10 N 1.65600 * 107.21825 * 89.99826 * 7 6 5 11 11 C 1.46502 * 119.99983 * 90.00342 * 10 7 6 12 12 C 1.53005 * 109.47048 * 94.99855 * 11 10 7 13 13 C 1.46498 * 120.00130 * 270.00508 * 10 7 6 14 14 C 1.50701 * 109.47343 * 94.99648 * 13 10 7 15 15 H 1.08000 * 119.99959 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99845 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00089 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99587 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47060 * 90.00372 * 18 16 14 20 20 H 1.48497 * 109.46745 * 210.00016 * 18 16 14 21 21 H 1.48497 * 109.47060 * 330.00156 * 18 16 14 22 22 C 1.47177 * 118.07589 * 50.50135 * 6 5 3 23 23 C 1.53293 * 108.37437 * 309.54580 * 22 6 5 24 24 H 1.09006 * 109.51285 * 292.27682 * 23 22 6 25 25 C 1.52999 * 109.51557 * 172.17812 * 23 22 6 26 26 C 1.52997 * 109.47317 * 175.10243 * 25 23 22 27 27 O 1.42956 * 109.51319 * 64.99703 * 3 2 1 28 28 H 1.09000 * 109.47023 * 60.00266 * 1 2 3 29 29 H 1.09006 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47222 * 300.00266 * 1 2 3 31 31 H 1.08999 * 109.46756 * 239.99478 * 2 1 3 32 32 H 1.08999 * 109.46846 * 120.00496 * 2 1 3 33 33 H 1.08998 * 109.67890 * 307.49495 * 5 3 2 34 34 H 1.09001 * 109.68652 * 68.05123 * 5 3 2 35 35 H 1.08997 * 109.46931 * 215.00041 * 11 10 7 36 36 H 1.08999 * 109.46910 * 335.00343 * 11 10 7 37 37 H 1.08999 * 109.46867 * 60.00461 * 12 11 10 38 38 H 1.08995 * 109.46813 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.46673 * 300.00022 * 12 11 10 40 40 H 1.09002 * 109.47261 * 215.00025 * 13 10 7 41 41 H 1.09005 * 109.46889 * 334.99652 * 13 10 7 42 42 H 0.96998 * 119.99522 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.72542 * 189.80348 * 22 6 5 44 44 H 1.08993 * 109.64635 * 69.24344 * 22 6 5 45 45 H 1.08996 * 109.46929 * 55.09347 * 25 23 22 46 46 H 1.09002 * 109.46716 * 295.10152 * 25 23 22 47 47 H 1.09002 * 109.47153 * 299.99641 * 26 25 23 48 48 H 1.09001 * 109.46832 * 179.97438 * 26 25 23 49 49 H 1.09004 * 109.47261 * 59.99813 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6080 1.9822 -0.8427 5 6 3.5683 1.4451 -0.1196 6 7 4.0463 2.8237 0.0706 7 16 5.0886 3.5215 -1.0106 8 8 5.7654 4.5537 -0.3066 9 8 5.7630 2.4546 -1.6635 10 7 4.1679 4.2695 -2.1661 11 6 3.7619 5.6659 -1.9885 12 6 4.7545 6.5811 -2.7084 13 6 3.7594 3.5349 -3.3660 14 6 2.3833 2.9571 -3.1571 15 1 1.8647 3.1211 -2.2241 16 6 1.7860 2.2200 -4.1576 17 7 2.4174 2.0207 -5.2940 18 14 0.0799 1.5045 -3.8990 19 1 -0.9411 2.4832 -4.3516 20 1 -0.0548 0.2504 -4.6827 21 1 -0.1204 1.2111 -2.4571 22 6 3.5701 3.5655 1.2493 23 6 2.0419 3.4584 1.3027 24 1 1.6091 4.0057 0.4652 25 6 1.5336 4.0518 2.6181 26 6 0.0036 4.0560 2.6183 27 8 1.6623 2.0825 1.2212 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 3.9975 0.7988 0.6460 34 1 3.8599 1.0886 -1.1075 35 1 2.7656 5.8105 -2.4062 36 1 3.7491 5.9082 -0.9259 37 1 4.7673 6.3388 -3.7710 38 1 4.4521 7.6200 -2.5766 39 1 5.7508 6.4364 -2.2906 40 1 3.7432 4.2129 -4.2193 41 1 4.4672 2.7280 -3.5565 42 1 1.9970 1.5025 -5.9979 43 1 3.8621 4.6124 1.1677 44 1 4.0002 3.1332 2.1527 45 1 1.8999 5.0732 2.7215 46 1 1.8954 3.4500 3.4519 47 1 -0.3581 4.6578 1.7845 48 1 -0.3584 4.4784 3.5556 49 1 -0.3626 3.0345 2.5149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420729836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:15 Heat of formation + Delta-G solvation = -154.337463 kcal Electronic energy + Delta-G solvation = -30685.463536 eV Core-core repulsion = 26773.187090 eV Total energy + Delta-G solvation = -3912.276446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58762 -38.45026 -37.69054 -36.95015 -35.94734 -35.84820 -34.67623 -33.38524 -31.55085 -30.39895 -28.52227 -27.96911 -25.35080 -24.94126 -23.71671 -23.23552 -22.02962 -21.70976 -19.89332 -18.77365 -18.65975 -18.27068 -17.75923 -17.45481 -16.57416 -16.44755 -16.00407 -15.72179 -15.36986 -15.21757 -14.98058 -14.70321 -14.62690 -14.50342 -14.26267 -13.80778 -13.66390 -13.53283 -13.38552 -13.33250 -13.15047 -13.10642 -13.04525 -12.78651 -12.72370 -12.65657 -12.47432 -12.29973 -12.24167 -12.11450 -11.92873 -11.79958 -11.68933 -11.59727 -11.47953 -11.15638 -10.95086 -10.54439 -9.81427 -9.67207 -8.14548 -6.27924 -0.39418 1.42712 1.45121 1.54289 1.87001 2.42838 2.49849 2.73953 3.17531 3.25762 3.70477 3.73742 3.91813 4.00160 4.04688 4.15686 4.22523 4.31806 4.40256 4.40872 4.44946 4.46914 4.54655 4.62545 4.68083 4.72915 4.83041 4.86849 4.93732 4.96863 5.01181 5.11297 5.12538 5.15217 5.16679 5.24361 5.27008 5.36474 5.39551 5.45047 5.47639 5.51958 5.57536 5.78630 5.96766 6.12999 6.33100 6.83937 7.42227 8.93142 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008343 B = 0.008107 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.288707 B = 3453.010295 C = 5273.986935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.061 0.939 5 C 0.102 3.898 6 N -1.005 6.005 7 S 2.793 3.207 8 O -0.998 6.998 9 O -1.014 7.014 10 N -0.995 5.995 11 C 0.122 3.878 12 C -0.167 4.167 13 C 0.261 3.739 14 C -0.530 4.530 15 H 0.076 0.924 16 C 0.017 3.983 17 N -0.930 5.930 18 Si 0.930 3.070 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.224 1.224 22 C 0.091 3.909 23 C 0.075 3.925 24 H 0.052 0.948 25 C -0.108 4.108 26 C -0.146 4.146 27 O -0.370 6.370 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 3.451 15.459 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C 0.019 3.981 4 H 0.079 0.921 5 C -0.024 4.024 6 N -0.845 5.845 7 S 2.803 3.197 8 O -0.982 6.982 9 O -0.998 6.998 10 N -0.836 5.836 11 C -0.004 4.004 12 C -0.226 4.226 13 C 0.137 3.863 14 C -0.569 4.569 15 H 0.094 0.906 16 C -0.183 4.183 17 N -0.570 5.570 18 Si 0.756 3.244 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.147 1.147 22 C -0.034 4.034 23 C 0.016 3.984 24 H 0.070 0.930 25 C -0.146 4.146 26 C -0.203 4.203 27 O -0.290 6.290 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.153 3.260 15.470 16.121 hybrid contribution -0.780 -0.399 -1.198 1.484 sum -3.933 2.861 14.272 15.078 Atomic orbital electron populations 1.21838 0.94942 1.02172 1.01917 1.21493 0.97179 0.93236 1.03192 1.22552 0.92611 0.95375 0.87569 0.92116 1.22035 0.95816 0.81844 1.02697 1.58129 1.65432 1.23078 1.37842 1.01406 0.73786 0.72225 0.72281 1.93513 1.72433 1.58268 1.74006 1.93519 1.73175 1.57369 1.75764 1.57704 1.70831 1.20825 1.34245 1.21257 0.99358 0.78901 1.00848 1.22190 0.99307 1.00615 1.00529 1.18738 0.94799 0.90583 0.82185 1.21789 1.01539 1.32258 1.01342 0.90644 1.25706 1.01255 0.96557 0.94732 1.70070 1.39631 1.41059 1.06195 0.86041 0.80005 0.77489 0.80847 1.21061 1.21922 1.14722 1.22317 0.95717 0.97371 0.88034 1.22618 0.92658 0.83313 0.99796 0.92985 1.21531 0.96919 1.01564 0.94568 1.21670 0.94988 1.01717 1.01954 1.87855 1.79577 1.23702 1.37826 0.93779 0.91330 0.91905 0.90781 0.89646 0.89503 0.90464 0.90134 0.89717 0.93462 0.88913 0.93493 0.96274 0.96735 0.92834 0.88108 0.89107 0.88492 0.90277 0.93335 0.91126 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.81 71.98 0.71 -3.28 16 2 C -0.11 -3.13 5.64 30.59 0.17 -2.96 16 3 C 0.08 2.47 2.78 30.69 0.09 2.56 16 4 H 0.06 2.28 5.78 -2.38 -0.01 2.27 16 5 C 0.10 3.41 5.86 86.36 0.51 3.92 16 6 N -1.00 -33.67 3.40 -511.58 -1.74 -35.41 16 7 S 2.79 111.77 6.07 -56.49 -0.34 111.43 16 8 O -1.00 -39.35 15.91 -128.00 -2.04 -41.39 16 9 O -1.01 -48.58 15.49 -128.00 -1.98 -50.56 16 10 N -1.00 -40.36 2.82 -519.83 -1.47 -41.83 16 11 C 0.12 3.99 6.06 86.38 0.52 4.51 16 12 C -0.17 -5.04 10.24 71.98 0.74 -4.30 16 13 C 0.26 12.90 5.43 85.63 0.47 13.37 16 14 C -0.53 -26.38 9.18 25.60 0.24 -26.14 16 15 H 0.08 3.53 5.72 -2.91 -0.02 3.51 16 16 C 0.02 0.88 5.46 84.66 0.46 1.35 16 17 N -0.93 -53.07 13.29 21.45 0.28 -52.79 16 18 Si 0.93 39.86 29.54 68.60 2.03 41.88 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.22 -8.49 4.59 99.48 0.46 -8.04 16 22 C 0.09 2.37 5.86 86.35 0.51 2.87 16 23 C 0.08 1.89 2.78 30.69 0.09 1.97 16 24 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 25 C -0.11 -1.94 5.64 30.59 0.17 -1.77 16 26 C -0.15 -2.63 9.81 71.98 0.71 -1.93 16 27 O -0.37 -10.49 9.11 -148.98 -1.36 -11.85 16 28 H 0.04 1.33 5.63 -2.39 -0.01 1.31 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.58 7.82 -2.39 -0.02 1.56 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 3.02 7.25 -2.39 -0.02 3.01 16 35 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 36 H 0.08 2.35 7.61 -2.39 -0.02 2.33 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.02 1.01 8.11 -2.39 -0.02 0.99 16 41 H 0.01 0.82 6.91 -2.38 -0.02 0.81 16 42 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.10 2.41 7.25 -2.39 -0.02 2.39 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.05 1.01 7.83 -2.38 -0.02 0.99 16 Total: -1.00 -64.92 391.15 -0.59 -65.51 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.66 Total: 24.84 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 5.36 Total: -9.83 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -2.92 Total: -130.03 kcal Atomic # 8 Polarization: -98.42 SS G_CDS: -5.38 Total: -103.80 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 111.77 SS G_CDS: -0.34 Total: 111.43 kcal Total: -64.92 -0.59 -65.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420729836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.826 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds