Wall clock time and date at job start Tue Mar 31 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 H 1.09001 * 109.51198 * 55.95076 * 3 2 1 5 5 C 1.53297 * 109.51274 * 176.05278 * 3 2 1 6 6 N 1.47148 * 108.38761 * 67.62125 * 5 3 2 7 7 S 1.65599 * 120.98278 * 230.51127 * 6 5 3 8 8 O 1.42098 * 106.39996 * 151.34765 * 7 6 5 9 9 O 1.42105 * 106.40065 * 18.43348 * 7 6 5 10 10 N 1.65594 * 107.22278 * 264.88992 * 7 6 5 11 11 C 1.46498 * 120.00074 * 274.90742 * 10 7 6 12 12 C 1.53003 * 109.46913 * 264.99418 * 11 10 7 13 13 C 1.46498 * 119.99826 * 94.90069 * 10 7 6 14 14 C 1.50698 * 109.47449 * 263.89875 * 13 10 7 15 15 H 1.08001 * 119.99705 * 355.10563 * 14 13 10 16 16 C 1.37874 * 120.00278 * 175.09784 * 14 13 10 17 17 N 1.31516 * 119.99865 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47138 * 179.97438 * 18 16 14 20 20 H 1.48506 * 109.47201 * 60.00371 * 18 16 14 21 21 H 1.48499 * 109.47381 * 300.00207 * 18 16 14 22 22 C 1.47154 * 118.03414 * 50.78460 * 6 5 3 23 23 C 1.53712 * 108.16318 * 309.16008 * 22 6 5 24 24 H 1.08998 * 109.65644 * 292.57216 * 23 22 6 25 25 C 1.53001 * 109.44124 * 172.37414 * 23 22 6 26 26 C 1.53000 * 109.46919 * 175.38853 * 25 23 22 27 27 O 1.42956 * 109.14565 * 52.53709 * 23 22 6 28 28 H 1.09002 * 109.47050 * 299.99310 * 1 2 3 29 29 H 1.08993 * 109.47621 * 59.99973 * 1 2 3 30 30 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47050 * 240.00690 * 2 1 3 32 32 H 1.08993 * 109.47621 * 120.00027 * 2 1 3 33 33 H 1.09002 * 109.68193 * 307.89870 * 5 3 2 34 34 H 1.09005 * 109.71034 * 187.36673 * 5 3 2 35 35 H 1.08997 * 109.47391 * 24.99855 * 11 10 7 36 36 H 1.09005 * 109.47005 * 144.99400 * 11 10 7 37 37 H 1.08992 * 109.47140 * 300.00037 * 12 11 10 38 38 H 1.09004 * 109.46590 * 60.00387 * 12 11 10 39 39 H 1.08998 * 109.46661 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47114 * 143.90206 * 13 10 7 41 41 H 1.08995 * 109.47342 * 23.90215 * 13 10 7 42 42 H 0.96998 * 119.99821 * 0.02562 * 17 16 14 43 43 H 1.09002 * 109.68095 * 68.93975 * 22 6 5 44 44 H 1.09005 * 109.68051 * 189.49215 * 22 6 5 45 45 H 1.09005 * 109.47087 * 295.38919 * 25 23 22 46 46 H 1.08995 * 109.47325 * 55.38478 * 25 23 22 47 47 H 1.09005 * 109.47146 * 60.00181 * 26 25 23 48 48 H 1.08997 * 109.46912 * 179.97438 * 26 25 23 49 49 H 1.08997 * 109.47531 * 299.99740 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6189 1.9775 0.8513 5 6 3.5696 1.4448 0.0995 6 7 4.1166 0.8844 -1.1463 7 16 5.2443 -0.3278 -1.1128 8 8 5.0687 -1.0724 -2.3102 9 8 5.1701 -0.9091 0.1818 10 7 6.7347 0.3859 -1.2202 11 6 7.2956 0.7166 -2.5325 12 6 8.2101 -0.4186 -2.9971 13 6 7.4923 0.6866 -0.0029 14 6 7.2580 2.1216 0.3930 15 1 6.6741 2.7692 -0.2443 16 6 7.7890 2.6079 1.5688 17 7 8.5003 1.8194 2.3447 18 14 7.4980 4.3865 2.0599 19 1 8.1689 4.6582 3.3567 20 1 6.0395 4.6299 2.1973 21 1 8.0537 5.2854 1.0167 22 6 3.6365 1.4373 -2.4227 23 6 2.0996 1.4316 -2.3995 24 1 1.7365 0.4039 -2.4082 25 6 1.5689 2.1727 -3.6284 26 6 0.0430 2.0688 -3.6670 27 8 1.6462 2.0882 -1.2133 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8834 0.8337 0.9457 34 1 3.9280 2.4659 0.2312 35 1 6.4864 0.8484 -3.2508 36 1 7.8706 1.6398 -2.4596 37 1 9.0193 -0.5503 -2.2788 38 1 7.6350 -1.3417 -3.0699 39 1 8.6271 -0.1727 -3.9737 40 1 8.5549 0.5297 -0.1882 41 1 7.1628 0.0293 0.8018 42 1 8.6517 0.8960 2.0896 43 1 4.0009 2.4577 -2.5411 44 1 3.9946 0.8211 -3.2475 45 1 1.8605 3.2216 -3.5742 46 1 1.9865 1.7257 -4.5306 47 1 -0.3746 2.5159 -2.7647 48 1 -0.3351 2.5971 -4.5422 49 1 -0.2487 1.0200 -3.7212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420729839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:21 Heat of formation + Delta-G solvation = -137.123473 kcal Electronic energy + Delta-G solvation = -30191.132363 eV Core-core repulsion = 26279.602371 eV Total energy + Delta-G solvation = -3911.529992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.83586 -36.87199 -36.20513 -35.35304 -34.76735 -34.57337 -32.96536 -32.49703 -29.92508 -29.56380 -26.91749 -26.18389 -24.24239 -23.19449 -23.02296 -21.97900 -21.76185 -19.68502 -18.56355 -17.48149 -17.21594 -16.74424 -16.57909 -15.87722 -15.38936 -14.96702 -14.91331 -14.34413 -14.01541 -13.86942 -13.77969 -13.66369 -13.49774 -13.13007 -12.96723 -12.63125 -12.53568 -12.18099 -12.02486 -11.99682 -11.93862 -11.74287 -11.67689 -11.48724 -11.30848 -11.19905 -11.13190 -11.10753 -11.01111 -10.98121 -10.79816 -10.56298 -10.34560 -10.17277 -10.07448 -9.94109 -9.43100 -8.53529 -8.44113 -7.97659 -6.45983 -4.20266 1.11018 3.28863 3.37934 3.37992 3.57403 3.74773 3.96105 4.45175 4.56667 4.73402 4.83812 4.95798 4.98289 5.03717 5.11641 5.17719 5.23495 5.28944 5.33312 5.41457 5.51018 5.61300 5.61985 5.67635 5.69002 5.71309 5.74126 5.82650 5.86493 5.96335 5.98042 6.03601 6.08221 6.17492 6.18565 6.23889 6.30278 6.36658 6.50765 6.55537 6.73741 7.00116 7.18862 7.28050 7.47038 7.94692 8.35805 8.71961 9.51387 10.91419 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.005208 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.499896 B = 5375.277094 C = 6264.369218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.161 4.161 3 C 0.083 3.917 4 H 0.112 0.888 5 C 0.096 3.904 6 N -1.003 6.003 7 S 2.784 3.216 8 O -0.996 6.996 9 O -0.975 6.975 10 N -0.987 5.987 11 C 0.131 3.869 12 C -0.170 4.170 13 C 0.236 3.764 14 C -0.617 4.617 15 H 0.056 0.944 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.066 2.934 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.288 1.288 22 C 0.093 3.907 23 C 0.077 3.923 24 H 0.066 0.934 25 C -0.115 4.115 26 C -0.147 4.147 27 O -0.365 6.365 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.041 0.959 42 H 0.270 0.730 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 -0.154 -10.423 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C 0.024 3.976 4 H 0.130 0.870 5 C -0.029 4.029 6 N -0.842 5.842 7 S 2.794 3.206 8 O -0.980 6.980 9 O -0.960 6.960 10 N -0.828 5.828 11 C 0.004 3.996 12 C -0.230 4.230 13 C 0.113 3.887 14 C -0.656 4.656 15 H 0.074 0.926 16 C -0.182 4.182 17 N -0.540 5.540 18 Si 0.894 3.106 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.215 1.215 22 C -0.034 4.034 23 C 0.018 3.982 24 H 0.084 0.916 25 C -0.153 4.153 26 C -0.205 4.205 27 O -0.284 6.284 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.047 0.184 -9.157 15.940 hybrid contribution 0.126 -0.879 -1.199 1.492 sum -12.920 -0.695 -10.356 16.573 Atomic orbital electron populations 1.21685 0.95111 1.01261 1.02161 1.22180 0.96853 0.97520 1.03321 1.22600 0.93863 0.93305 0.87853 0.87017 1.22076 0.93080 1.01402 0.86370 1.58207 1.58075 1.56743 1.11135 1.01817 0.72534 0.73506 0.72753 1.93532 1.86344 1.68907 1.49198 1.93558 1.86350 1.75400 1.40657 1.57654 1.34156 1.78268 1.12723 1.20979 0.97174 0.98560 0.82876 1.22216 1.00434 0.99541 1.00771 1.19242 0.91703 0.97223 0.80524 1.22314 1.37919 0.96252 1.09099 0.92592 1.25768 0.93605 1.05919 0.92950 1.70791 1.36433 1.07918 1.38903 0.83579 0.76346 0.74256 0.76390 1.20684 1.21275 1.21477 1.22134 0.95190 1.00403 0.85633 1.22526 0.92611 0.96935 0.86136 0.91593 1.21514 0.96705 1.01440 0.95665 1.21693 0.95286 1.01524 1.01954 1.87945 1.75739 1.51709 1.12992 0.92656 0.92287 0.93038 0.91669 0.90409 0.87801 0.90074 0.92193 0.90173 0.92212 0.92473 0.92172 0.95661 0.94067 0.91970 0.90746 0.89021 0.90849 0.90517 0.91880 0.92882 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.80 37.16 0.36 -1.19 16 2 C -0.16 -2.10 4.97 -26.73 -0.13 -2.24 16 3 C 0.08 1.13 3.32 -26.58 -0.09 1.04 16 4 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 5 C 0.10 1.60 6.10 -3.53 -0.02 1.58 16 6 N -1.00 -17.05 2.98 -112.82 -0.34 -17.38 16 7 S 2.78 55.84 6.08 -107.50 -0.65 55.18 16 8 O -1.00 -20.13 15.93 -57.17 -0.91 -21.04 16 9 O -0.98 -22.51 15.11 -57.17 -0.86 -23.38 16 10 N -0.99 -20.43 2.83 -115.67 -0.33 -20.76 16 11 C 0.13 2.27 6.05 -4.04 -0.02 2.25 16 12 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 13 C 0.24 5.79 4.78 -5.20 -0.02 5.76 16 14 C -0.62 -16.11 9.38 -34.44 -0.32 -16.43 16 15 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 16 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 17 N -0.91 -26.43 13.65 55.43 0.76 -25.67 16 18 Si 1.07 24.11 29.90 -169.99 -5.08 19.03 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.09 1.31 6.01 -3.31 -0.02 1.29 16 23 C 0.08 0.97 2.41 -26.36 -0.06 0.90 16 24 H 0.07 0.85 6.16 -51.93 -0.32 0.53 16 25 C -0.12 -1.15 5.65 -26.73 -0.15 -1.30 16 26 C -0.15 -1.33 9.81 37.16 0.36 -0.97 16 27 O -0.37 -4.93 9.27 -35.23 -0.33 -5.25 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.63 7.80 -51.93 -0.41 0.22 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.92 5.99 -51.93 -0.31 0.61 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.87 6.84 -51.93 -0.36 1.52 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 36 H 0.08 1.41 8.11 -51.93 -0.42 0.98 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.93 8.02 -51.93 -0.42 0.52 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.04 1.11 6.53 -51.93 -0.34 0.77 16 42 H 0.27 7.88 7.19 -40.82 -0.29 7.59 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.23 7.08 -51.93 -0.37 0.86 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.62 7.83 -51.93 -0.41 0.22 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -31.37 393.94 -10.38 -41.75 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.74 Total: 2.67 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 0.16 Total: -11.08 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.09 Total: -63.82 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -2.10 Total: -49.67 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.08 Total: 19.03 kcal Atomic # 16 Polarization: 55.84 SS G_CDS: -0.65 Total: 55.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.37 -10.38 -41.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420729839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.375 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds