Wall clock time and date at job start Tue Mar 31 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 H 1.09001 * 109.51198 * 55.95076 * 3 2 1 5 5 C 1.53297 * 109.51274 * 176.05278 * 3 2 1 6 6 N 1.47148 * 108.38761 * 67.62125 * 5 3 2 7 7 S 1.65599 * 120.98278 * 230.51127 * 6 5 3 8 8 O 1.42098 * 106.39996 * 151.34765 * 7 6 5 9 9 O 1.42105 * 106.40065 * 18.43348 * 7 6 5 10 10 N 1.65594 * 107.22278 * 264.88992 * 7 6 5 11 11 C 1.46498 * 120.00074 * 274.90742 * 10 7 6 12 12 C 1.53003 * 109.46913 * 264.99418 * 11 10 7 13 13 C 1.46498 * 119.99826 * 94.90069 * 10 7 6 14 14 C 1.50698 * 109.47449 * 263.89875 * 13 10 7 15 15 H 1.08001 * 119.99705 * 355.10563 * 14 13 10 16 16 C 1.37874 * 120.00278 * 175.09784 * 14 13 10 17 17 N 1.31516 * 119.99865 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47138 * 179.97438 * 18 16 14 20 20 H 1.48506 * 109.47201 * 60.00371 * 18 16 14 21 21 H 1.48499 * 109.47381 * 300.00207 * 18 16 14 22 22 C 1.47154 * 118.03414 * 50.78460 * 6 5 3 23 23 C 1.53712 * 108.16318 * 309.16008 * 22 6 5 24 24 H 1.08998 * 109.65644 * 292.57216 * 23 22 6 25 25 C 1.53001 * 109.44124 * 172.37414 * 23 22 6 26 26 C 1.53000 * 109.46919 * 175.38853 * 25 23 22 27 27 O 1.42956 * 109.14565 * 52.53709 * 23 22 6 28 28 H 1.09002 * 109.47050 * 299.99310 * 1 2 3 29 29 H 1.08993 * 109.47621 * 59.99973 * 1 2 3 30 30 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47050 * 240.00690 * 2 1 3 32 32 H 1.08993 * 109.47621 * 120.00027 * 2 1 3 33 33 H 1.09002 * 109.68193 * 307.89870 * 5 3 2 34 34 H 1.09005 * 109.71034 * 187.36673 * 5 3 2 35 35 H 1.08997 * 109.47391 * 24.99855 * 11 10 7 36 36 H 1.09005 * 109.47005 * 144.99400 * 11 10 7 37 37 H 1.08992 * 109.47140 * 300.00037 * 12 11 10 38 38 H 1.09004 * 109.46590 * 60.00387 * 12 11 10 39 39 H 1.08998 * 109.46661 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47114 * 143.90206 * 13 10 7 41 41 H 1.08995 * 109.47342 * 23.90215 * 13 10 7 42 42 H 0.96998 * 119.99821 * 0.02562 * 17 16 14 43 43 H 1.09002 * 109.68095 * 68.93975 * 22 6 5 44 44 H 1.09005 * 109.68051 * 189.49215 * 22 6 5 45 45 H 1.09005 * 109.47087 * 295.38919 * 25 23 22 46 46 H 1.08995 * 109.47325 * 55.38478 * 25 23 22 47 47 H 1.09005 * 109.47146 * 60.00181 * 26 25 23 48 48 H 1.08997 * 109.46912 * 179.97438 * 26 25 23 49 49 H 1.08997 * 109.47531 * 299.99740 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6189 1.9775 0.8513 5 6 3.5696 1.4448 0.0995 6 7 4.1166 0.8844 -1.1463 7 16 5.2443 -0.3278 -1.1128 8 8 5.0687 -1.0724 -2.3102 9 8 5.1701 -0.9091 0.1818 10 7 6.7347 0.3859 -1.2202 11 6 7.2956 0.7166 -2.5325 12 6 8.2101 -0.4186 -2.9971 13 6 7.4923 0.6866 -0.0029 14 6 7.2580 2.1216 0.3930 15 1 6.6741 2.7692 -0.2443 16 6 7.7890 2.6079 1.5688 17 7 8.5003 1.8194 2.3447 18 14 7.4980 4.3865 2.0599 19 1 8.1689 4.6582 3.3567 20 1 6.0395 4.6299 2.1973 21 1 8.0537 5.2854 1.0167 22 6 3.6365 1.4373 -2.4227 23 6 2.0996 1.4316 -2.3995 24 1 1.7365 0.4039 -2.4082 25 6 1.5689 2.1727 -3.6284 26 6 0.0430 2.0688 -3.6670 27 8 1.6462 2.0882 -1.2133 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8834 0.8337 0.9457 34 1 3.9280 2.4659 0.2312 35 1 6.4864 0.8484 -3.2508 36 1 7.8706 1.6398 -2.4596 37 1 9.0193 -0.5503 -2.2788 38 1 7.6350 -1.3417 -3.0699 39 1 8.6271 -0.1727 -3.9737 40 1 8.5549 0.5297 -0.1882 41 1 7.1628 0.0293 0.8018 42 1 8.6517 0.8960 2.0896 43 1 4.0009 2.4577 -2.5411 44 1 3.9946 0.8211 -3.2475 45 1 1.8605 3.2216 -3.5742 46 1 1.9865 1.7257 -4.5306 47 1 -0.3746 2.5159 -2.7647 48 1 -0.3351 2.5971 -4.5422 49 1 -0.2487 1.0200 -3.7212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420729839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:21 Heat of formation + Delta-G solvation = -157.281527 kcal Electronic energy + Delta-G solvation = -30192.006482 eV Core-core repulsion = 26279.602371 eV Total energy + Delta-G solvation = -3912.404111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94164 -38.54344 -37.89489 -37.04412 -35.93546 -35.61414 -34.95301 -33.42362 -31.50970 -30.59641 -28.18967 -27.93431 -25.31290 -25.04921 -24.11148 -23.44692 -22.79639 -20.79887 -20.05861 -19.11784 -18.90053 -18.34363 -17.87545 -17.36055 -16.53797 -16.43611 -15.95829 -15.67114 -15.62424 -15.41104 -15.03515 -14.85598 -14.65608 -14.53916 -14.16058 -14.04502 -13.78591 -13.64999 -13.55791 -13.37030 -13.27355 -13.15243 -12.94385 -12.87929 -12.81299 -12.65675 -12.61126 -12.31728 -12.17063 -11.96133 -11.95443 -11.93620 -11.80595 -11.71921 -11.36852 -11.21426 -11.03536 -10.55559 -9.88003 -9.67436 -8.63143 -6.38816 -0.48561 1.54826 1.61566 1.77604 1.80940 2.37357 2.57465 2.72950 3.15422 3.20073 3.57514 3.68149 3.79956 3.88359 3.97611 3.99817 4.13642 4.20567 4.29380 4.30551 4.34067 4.44565 4.51165 4.56713 4.61313 4.65749 4.71212 4.76749 4.84598 4.88295 4.90623 4.94209 5.00122 5.02486 5.06924 5.14194 5.21803 5.25966 5.28521 5.32811 5.36502 5.45198 5.50759 5.77637 5.86388 6.22404 6.24018 6.51971 7.41742 8.73314 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.005208 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.499896 B = 5375.277094 C = 6264.369218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.162 4.162 3 C 0.090 3.910 4 H 0.132 0.868 5 C 0.093 3.907 6 N -0.999 5.999 7 S 2.792 3.208 8 O -0.998 6.998 9 O -1.012 7.012 10 N -0.994 5.994 11 C 0.120 3.880 12 C -0.168 4.168 13 C 0.249 3.751 14 C -0.612 4.612 15 H 0.062 0.938 16 C -0.027 4.027 17 N -0.935 5.935 18 Si 1.110 2.890 19 H -0.288 1.288 20 H -0.267 1.267 21 H -0.269 1.269 22 C 0.085 3.915 23 C 0.077 3.923 24 H 0.063 0.937 25 C -0.112 4.112 26 C -0.144 4.144 27 O -0.365 6.365 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.255 0.745 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 1.509 -12.364 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.200 4.200 3 C 0.030 3.970 4 H 0.149 0.851 5 C -0.033 4.033 6 N -0.840 5.840 7 S 2.803 3.197 8 O -0.981 6.981 9 O -0.997 6.997 10 N -0.834 5.834 11 C -0.005 4.005 12 C -0.227 4.227 13 C 0.125 3.875 14 C -0.651 4.651 15 H 0.080 0.920 16 C -0.226 4.226 17 N -0.572 5.572 18 Si 0.932 3.068 19 H -0.214 1.214 20 H -0.192 1.192 21 H -0.194 1.194 22 C -0.040 4.040 23 C 0.017 3.983 24 H 0.081 0.919 25 C -0.150 4.150 26 C -0.202 4.202 27 O -0.283 6.283 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.874 1.829 -11.149 18.678 hybrid contribution 0.677 -1.443 -0.681 1.733 sum -14.196 0.387 -11.830 18.483 Atomic orbital electron populations 1.21636 0.92967 1.02060 1.02847 1.22179 0.98697 0.96854 1.02248 1.22588 0.91471 0.94063 0.88829 0.85075 1.22142 0.95429 1.00196 0.85514 1.57979 1.57082 1.56359 1.12591 1.01405 0.72616 0.73847 0.71878 1.93518 1.86414 1.69372 1.48835 1.93507 1.86857 1.76716 1.42585 1.57619 1.34519 1.78463 1.12777 1.21281 0.98375 0.99110 0.81736 1.22201 0.99631 0.98570 1.02263 1.18819 0.91303 0.96042 0.81366 1.22550 1.36914 0.96769 1.08850 0.91994 1.27191 0.92919 1.09229 0.93271 1.70916 1.38681 1.07590 1.39989 0.83030 0.77412 0.70152 0.76248 1.21381 1.19180 1.19384 1.22459 0.96526 1.00819 0.84238 1.22662 0.91342 0.97396 0.86863 0.91867 1.21554 0.97359 1.01283 0.94789 1.21669 0.94472 1.01822 1.02221 1.87958 1.75480 1.51822 1.13087 0.91526 0.91979 0.92241 0.93006 0.91341 0.90074 0.90770 0.89593 0.90297 0.93549 0.93293 0.88644 0.96857 0.97102 0.93504 0.89811 0.88184 0.90620 0.88836 0.92827 0.91330 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.80 71.98 0.71 -1.99 16 2 C -0.16 -4.11 4.97 30.59 0.15 -3.96 16 3 C 0.09 2.34 3.32 30.69 0.10 2.44 16 4 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 5 C 0.09 3.08 6.10 86.36 0.53 3.61 16 6 N -1.00 -33.52 2.98 -510.84 -1.52 -35.04 16 7 S 2.79 113.16 6.08 -56.49 -0.34 112.82 16 8 O -1.00 -39.78 15.93 -128.00 -2.04 -41.82 16 9 O -1.01 -48.66 15.11 -128.00 -1.93 -50.59 16 10 N -0.99 -41.49 2.83 -519.86 -1.47 -42.96 16 11 C 0.12 4.05 6.05 86.38 0.52 4.57 16 12 C -0.17 -5.10 10.24 71.98 0.74 -4.37 16 13 C 0.25 12.63 4.78 85.63 0.41 13.03 16 14 C -0.61 -32.24 9.38 25.60 0.24 -32.00 16 15 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 16 C -0.03 -1.49 5.46 84.65 0.46 -1.03 16 17 N -0.93 -56.04 13.65 21.45 0.29 -55.75 16 18 Si 1.11 47.91 29.90 68.60 2.05 49.96 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 C 0.08 2.23 6.01 86.49 0.52 2.75 16 23 C 0.08 1.76 2.41 30.83 0.07 1.83 16 24 H 0.06 1.50 6.16 -2.39 -0.01 1.49 16 25 C -0.11 -1.89 5.65 30.59 0.17 -1.72 16 26 C -0.14 -2.19 9.81 71.98 0.71 -1.49 16 27 O -0.36 -9.09 9.27 -148.98 -1.38 -10.47 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.18 7.80 -2.39 -0.02 1.16 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.44 5.99 -2.39 -0.01 1.42 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 3.05 6.84 -2.39 -0.02 3.03 16 34 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.09 2.43 7.75 -2.39 -0.02 2.41 16 36 H 0.08 2.68 8.11 -2.38 -0.02 2.66 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.56 8.02 -2.38 -0.02 1.54 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.01 0.71 8.11 -2.39 -0.02 0.69 16 41 H 0.01 0.63 6.53 -2.39 -0.02 0.61 16 42 H 0.26 15.63 7.19 -92.71 -0.67 14.96 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.10 2.45 7.08 -2.38 -0.02 2.44 16 45 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.05 0.92 7.83 -2.38 -0.02 0.90 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -68.41 393.94 -0.01 -68.42 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.01 Total: 23.76 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.33 Total: -18.31 kcal Atomic # 7 Polarization: -131.06 SS G_CDS: -2.70 Total: -133.75 kcal Atomic # 8 Polarization: -97.53 SS G_CDS: -5.35 Total: -102.89 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.05 Total: 49.96 kcal Atomic # 16 Polarization: 113.16 SS G_CDS: -0.34 Total: 112.82 kcal Total: -68.41 -0.01 -68.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420729839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.866 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds