Wall clock time and date at job start Tue Mar 31 2020 17:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09000 * 109.51546 * 304.99918 * 3 2 1 5 5 C 1.53295 * 109.51595 * 184.89979 * 3 2 1 6 6 N 1.47174 * 108.37854 * 187.82838 * 5 3 2 7 7 S 1.65599 * 120.94060 * 230.47584 * 6 5 3 8 8 O 1.42103 * 106.40280 * 23.51539 * 7 6 5 9 9 O 1.42102 * 106.40026 * 156.43554 * 7 6 5 10 10 N 1.65603 * 107.21748 * 269.97190 * 7 6 5 11 11 C 1.46494 * 120.00086 * 270.00458 * 10 7 6 12 12 C 1.46505 * 119.99742 * 89.99884 * 10 7 6 13 13 H 1.08997 * 109.46950 * 0.02562 * 12 10 7 14 14 C 1.53001 * 109.46979 * 240.00079 * 12 10 7 15 15 C 1.50705 * 109.46665 * 120.00208 * 12 10 7 16 16 H 1.07998 * 120.00096 * 359.97438 * 15 12 10 17 17 C 1.37871 * 119.99692 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00073 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00065 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47360 * 89.99511 * 19 17 15 21 21 H 1.48504 * 109.47592 * 209.99870 * 19 17 15 22 22 H 1.48503 * 109.47045 * 329.99896 * 19 17 15 23 23 C 1.47152 * 118.07368 * 50.44687 * 6 5 3 24 24 C 1.53293 * 108.38766 * 309.50333 * 23 6 5 25 25 H 1.09007 * 109.51366 * 292.37529 * 24 23 6 26 26 C 1.52997 * 109.51229 * 172.22952 * 24 23 6 27 27 C 1.52997 * 109.47564 * 175.25391 * 26 24 23 28 28 O 1.42959 * 109.22368 * 52.30236 * 24 23 6 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09005 * 109.67988 * 307.49336 * 5 3 2 35 35 H 1.08994 * 109.68254 * 68.05456 * 5 3 2 36 36 H 1.08999 * 109.47685 * 89.99663 * 11 10 7 37 37 H 1.08999 * 109.46904 * 210.00060 * 11 10 7 38 38 H 1.09004 * 109.47237 * 329.99372 * 11 10 7 39 39 H 1.08996 * 109.46861 * 300.00397 * 14 12 10 40 40 H 1.09001 * 109.46996 * 60.00404 * 14 12 10 41 41 H 1.09002 * 109.46711 * 180.02562 * 14 12 10 42 42 H 0.97002 * 119.99844 * 180.02562 * 18 17 15 43 43 H 1.09009 * 109.68040 * 189.77618 * 23 6 5 44 44 H 1.09001 * 109.68297 * 69.23244 * 23 6 5 45 45 H 1.09000 * 109.46909 * 295.25353 * 26 24 23 46 46 H 1.09001 * 109.47652 * 55.24793 * 26 24 23 47 47 H 1.08990 * 109.47754 * 179.97438 * 27 26 24 48 48 H 1.09000 * 109.46976 * 299.99920 * 27 26 24 49 49 H 1.09001 * 109.47125 * 59.99079 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9821 -0.8416 5 6 3.5680 1.4453 -0.1234 6 7 4.0465 2.8238 0.0683 7 16 5.0877 3.5219 -1.0138 8 8 4.9144 2.8284 -2.2420 9 8 4.9188 4.9268 -0.8840 10 7 6.6259 3.1864 -0.5003 11 6 7.3084 4.1030 0.4162 12 6 7.3041 1.9727 -0.9624 13 1 6.6448 1.4210 -1.6325 14 6 7.6582 1.0968 0.2410 15 6 8.5645 2.3505 -1.6971 16 1 8.8332 3.3905 -1.8089 17 6 9.3740 1.3685 -2.2273 18 7 9.0464 0.1020 -2.0915 19 14 10.9367 1.8366 -3.1373 20 1 12.0676 1.9030 -2.1772 21 1 11.2288 0.8168 -4.1765 22 1 10.7560 3.1622 -3.7817 23 6 3.5723 3.5636 1.2486 24 6 2.0440 3.4576 1.3039 25 1 1.6105 4.0052 0.4670 26 6 1.5380 4.0501 2.6206 27 6 0.0080 4.0521 2.6245 28 8 1.6644 2.0817 1.2223 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.9992 0.7983 0.6406 35 1 3.8571 1.0897 -1.1123 36 1 7.0971 3.8124 1.4453 37 1 8.3832 4.0597 0.2398 38 1 6.9530 5.1192 0.2454 39 1 8.3175 1.6489 0.9107 40 1 6.7465 0.8236 0.7723 41 1 8.1632 0.1940 -0.1028 42 1 9.6161 -0.5890 -2.4642 43 1 3.8650 4.6105 1.1677 44 1 4.0033 3.1302 2.1511 45 1 1.9027 3.4489 3.4535 46 1 1.9029 5.0721 2.7232 47 1 -0.3525 4.4738 3.5626 48 1 -0.3566 4.6533 1.7916 49 1 -0.3569 3.0301 2.5219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420741926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:30 Heat of formation + Delta-G solvation = -130.626127 kcal Electronic energy + Delta-G solvation = -29584.093430 eV Core-core repulsion = 25672.845184 eV Total energy + Delta-G solvation = -3911.248246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.65056 -36.82881 -36.16496 -35.29775 -35.12126 -34.75659 -32.62305 -32.59646 -29.51535 -29.10711 -27.04326 -25.52167 -25.19245 -24.40557 -22.74504 -21.24412 -20.85999 -20.71164 -18.38460 -17.47707 -16.95227 -16.90014 -16.35606 -15.81071 -15.35978 -14.97925 -14.92120 -14.30896 -14.24208 -13.96375 -13.71802 -13.51957 -13.44009 -13.23113 -12.72237 -12.46541 -12.35322 -12.10983 -12.03370 -11.87347 -11.85434 -11.79281 -11.39751 -11.34801 -11.25229 -11.22027 -11.19225 -10.94795 -10.94327 -10.91561 -10.83758 -10.51283 -10.27984 -10.25457 -10.11922 -10.02621 -9.29638 -8.69050 -8.47173 -7.98133 -6.09742 -4.16387 1.09032 3.26698 3.33136 3.34087 3.38753 3.57723 3.99183 4.37783 4.45374 4.77475 4.80381 4.89040 4.94586 4.97289 5.04303 5.17302 5.21960 5.23237 5.30577 5.39471 5.51035 5.55804 5.63274 5.69390 5.70061 5.78638 5.78968 5.88915 5.92712 5.96362 6.04940 6.09564 6.16160 6.20356 6.24588 6.34043 6.55719 6.65507 6.80519 6.82019 7.01372 7.19991 7.43933 7.60219 7.76386 8.02259 8.24919 8.85401 9.49360 10.95904 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003797 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.151308 B = 7372.161662 C = 8150.296439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.083 3.917 4 H 0.061 0.939 5 C 0.091 3.909 6 N -1.013 6.013 7 S 2.776 3.224 8 O -0.970 6.970 9 O -0.994 6.994 10 N -0.988 5.988 11 C 0.097 3.903 12 C 0.268 3.732 13 H 0.057 0.943 14 C -0.146 4.146 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.092 3.908 24 C 0.082 3.918 25 H 0.061 0.939 26 C -0.115 4.115 27 C -0.148 4.148 28 O -0.369 6.369 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.009 0.991 41 H 0.092 0.908 42 H 0.263 0.737 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.082 2.921 9.722 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.023 3.977 4 H 0.079 0.921 5 C -0.035 4.035 6 N -0.851 5.851 7 S 2.787 3.213 8 O -0.954 6.954 9 O -0.978 6.978 10 N -0.830 5.830 11 C -0.050 4.050 12 C 0.165 3.835 13 H 0.075 0.925 14 C -0.205 4.205 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.035 4.035 24 C 0.022 3.978 25 H 0.079 0.921 26 C -0.153 4.153 27 C -0.205 4.205 28 O -0.288 6.288 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.337 3.153 9.024 18.072 hybrid contribution 1.300 0.067 -0.323 1.342 sum -14.037 3.220 8.700 16.825 Atomic orbital electron populations 1.21692 0.95190 1.01411 1.02134 1.21521 0.96694 0.93862 1.03300 1.22463 0.93490 0.94398 0.87321 0.92079 1.22111 0.94685 0.82723 1.03952 1.58537 1.62769 1.23537 1.40267 1.02077 0.72796 0.72905 0.73527 1.93588 1.85813 1.75131 1.40902 1.93507 1.86430 1.30731 1.87132 1.57717 1.30107 1.34433 1.60759 1.21295 1.00445 0.91756 0.91468 1.18731 0.93171 0.79404 0.92165 0.92515 1.22100 0.98197 1.02640 0.97579 1.21328 1.06433 0.93430 1.34899 0.91940 1.24903 0.98123 0.94888 0.95921 1.69859 1.38256 0.99264 1.45419 0.86492 0.82980 0.78403 0.79520 1.20636 1.21085 1.19829 1.22062 0.95114 0.97546 0.88735 1.22440 0.93337 0.83441 0.98560 0.92096 1.21510 0.96833 1.00792 0.96120 1.21691 0.95134 1.02426 1.01249 1.87892 1.79535 1.23268 1.38087 0.92997 0.92060 0.92785 0.90779 0.90060 0.90627 0.87900 0.94503 0.89792 0.92015 0.94876 0.97156 0.88944 0.92679 0.88422 0.90871 0.90839 0.90342 0.92824 0.92973 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.81 37.16 0.36 -1.00 16 2 C -0.12 -1.21 5.64 -26.74 -0.15 -1.36 16 3 C 0.08 1.04 2.78 -26.58 -0.07 0.97 16 4 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 5 C 0.09 1.34 6.00 -3.52 -0.02 1.32 16 6 N -1.01 -16.09 3.40 -113.04 -0.38 -16.47 16 7 S 2.78 55.28 6.16 -107.50 -0.66 54.62 16 8 O -0.97 -22.53 15.32 -57.17 -0.88 -23.41 16 9 O -0.99 -20.48 15.36 -57.17 -0.88 -21.36 16 10 N -0.99 -20.62 3.12 -115.85 -0.36 -20.98 16 11 C 0.10 1.73 9.65 59.84 0.58 2.31 16 12 C 0.27 6.52 2.62 -69.08 -0.18 6.34 16 13 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 14 C -0.15 -3.29 8.97 37.16 0.33 -2.96 16 15 C -0.52 -13.97 7.99 -34.44 -0.28 -14.24 16 16 H 0.06 1.67 7.33 -52.49 -0.38 1.28 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.50 11.32 55.43 0.63 -23.88 16 19 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.09 1.20 6.00 -3.53 -0.02 1.18 16 24 C 0.08 0.96 2.78 -26.58 -0.07 0.89 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 C -0.11 -1.05 5.64 -26.73 -0.15 -1.20 16 27 C -0.15 -1.25 9.81 37.16 0.36 -0.88 16 28 O -0.37 -4.60 9.11 -35.23 -0.32 -4.92 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.59 7.83 -51.93 -0.41 0.19 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.63 6.94 -51.93 -0.36 1.27 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.57 7.02 -51.93 -0.36 1.20 16 38 H 0.06 1.03 7.02 -51.93 -0.36 0.67 16 39 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 43 H 0.10 1.26 6.95 -51.92 -0.36 0.90 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -31.03 391.51 -10.15 -41.18 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.77 Total: 0.34 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 0.60 Total: -7.01 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.12 Total: -61.33 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -2.08 Total: -49.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 55.28 SS G_CDS: -0.66 Total: 54.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.03 -10.15 -41.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420741926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.446 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds