Wall clock time and date at job start Tue Mar 31 2020 17:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09000 * 109.51546 * 304.99918 * 3 2 1 5 5 C 1.53295 * 109.51595 * 184.89979 * 3 2 1 6 6 N 1.47174 * 108.37854 * 187.82838 * 5 3 2 7 7 S 1.65599 * 120.94060 * 230.47584 * 6 5 3 8 8 O 1.42103 * 106.40280 * 23.51539 * 7 6 5 9 9 O 1.42102 * 106.40026 * 156.43554 * 7 6 5 10 10 N 1.65603 * 107.21748 * 269.97190 * 7 6 5 11 11 C 1.46494 * 120.00086 * 270.00458 * 10 7 6 12 12 C 1.46505 * 119.99742 * 89.99884 * 10 7 6 13 13 H 1.08997 * 109.46950 * 0.02562 * 12 10 7 14 14 C 1.53001 * 109.46979 * 240.00079 * 12 10 7 15 15 C 1.50705 * 109.46665 * 120.00208 * 12 10 7 16 16 H 1.07998 * 120.00096 * 359.97438 * 15 12 10 17 17 C 1.37871 * 119.99692 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00073 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00065 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47360 * 89.99511 * 19 17 15 21 21 H 1.48504 * 109.47592 * 209.99870 * 19 17 15 22 22 H 1.48503 * 109.47045 * 329.99896 * 19 17 15 23 23 C 1.47152 * 118.07368 * 50.44687 * 6 5 3 24 24 C 1.53293 * 108.38766 * 309.50333 * 23 6 5 25 25 H 1.09007 * 109.51366 * 292.37529 * 24 23 6 26 26 C 1.52997 * 109.51229 * 172.22952 * 24 23 6 27 27 C 1.52997 * 109.47564 * 175.25391 * 26 24 23 28 28 O 1.42959 * 109.22368 * 52.30236 * 24 23 6 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09005 * 109.67988 * 307.49336 * 5 3 2 35 35 H 1.08994 * 109.68254 * 68.05456 * 5 3 2 36 36 H 1.08999 * 109.47685 * 89.99663 * 11 10 7 37 37 H 1.08999 * 109.46904 * 210.00060 * 11 10 7 38 38 H 1.09004 * 109.47237 * 329.99372 * 11 10 7 39 39 H 1.08996 * 109.46861 * 300.00397 * 14 12 10 40 40 H 1.09001 * 109.46996 * 60.00404 * 14 12 10 41 41 H 1.09002 * 109.46711 * 180.02562 * 14 12 10 42 42 H 0.97002 * 119.99844 * 180.02562 * 18 17 15 43 43 H 1.09009 * 109.68040 * 189.77618 * 23 6 5 44 44 H 1.09001 * 109.68297 * 69.23244 * 23 6 5 45 45 H 1.09000 * 109.46909 * 295.25353 * 26 24 23 46 46 H 1.09001 * 109.47652 * 55.24793 * 26 24 23 47 47 H 1.08990 * 109.47754 * 179.97438 * 27 26 24 48 48 H 1.09000 * 109.46976 * 299.99920 * 27 26 24 49 49 H 1.09001 * 109.47125 * 59.99079 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9821 -0.8416 5 6 3.5680 1.4453 -0.1234 6 7 4.0465 2.8238 0.0683 7 16 5.0877 3.5219 -1.0138 8 8 4.9144 2.8284 -2.2420 9 8 4.9188 4.9268 -0.8840 10 7 6.6259 3.1864 -0.5003 11 6 7.3084 4.1030 0.4162 12 6 7.3041 1.9727 -0.9624 13 1 6.6448 1.4210 -1.6325 14 6 7.6582 1.0968 0.2410 15 6 8.5645 2.3505 -1.6971 16 1 8.8332 3.3905 -1.8089 17 6 9.3740 1.3685 -2.2273 18 7 9.0464 0.1020 -2.0915 19 14 10.9367 1.8366 -3.1373 20 1 12.0676 1.9030 -2.1772 21 1 11.2288 0.8168 -4.1765 22 1 10.7560 3.1622 -3.7817 23 6 3.5723 3.5636 1.2486 24 6 2.0440 3.4576 1.3039 25 1 1.6105 4.0052 0.4670 26 6 1.5380 4.0501 2.6206 27 6 0.0080 4.0521 2.6245 28 8 1.6644 2.0817 1.2223 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.9992 0.7983 0.6406 35 1 3.8571 1.0897 -1.1123 36 1 7.0971 3.8124 1.4453 37 1 8.3832 4.0597 0.2398 38 1 6.9530 5.1192 0.2454 39 1 8.3175 1.6489 0.9107 40 1 6.7465 0.8236 0.7723 41 1 8.1632 0.1940 -0.1028 42 1 9.6161 -0.5890 -2.4642 43 1 3.8650 4.6105 1.1677 44 1 4.0033 3.1302 2.1511 45 1 1.9027 3.4489 3.4535 46 1 1.9029 5.0721 2.7232 47 1 -0.3525 4.4738 3.5626 48 1 -0.3566 4.6533 1.7916 49 1 -0.3569 3.0301 2.5219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420741926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:29 Heat of formation + Delta-G solvation = -150.691467 kcal Electronic energy + Delta-G solvation = -29584.963528 eV Core-core repulsion = 25672.845184 eV Total energy + Delta-G solvation = -3912.118344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.67441 -38.49378 -37.91373 -36.97915 -35.99266 -35.93406 -34.54311 -33.42263 -30.95495 -30.43348 -28.08520 -27.26242 -27.01661 -25.36508 -23.71263 -22.54115 -22.07369 -21.84678 -19.87596 -18.97555 -18.64548 -18.17970 -17.88377 -17.30962 -16.69961 -16.44197 -15.87778 -15.81996 -15.37555 -15.13767 -14.91140 -14.79672 -14.55889 -14.36594 -14.27464 -13.84262 -13.61748 -13.52029 -13.44047 -13.19472 -13.13060 -13.09635 -13.03889 -12.72130 -12.66408 -12.64538 -12.57275 -12.28054 -12.18615 -12.14737 -11.98385 -11.91064 -11.75173 -11.70386 -11.30678 -11.22858 -11.13965 -10.52072 -9.88674 -9.63846 -8.13459 -6.27120 -0.46792 1.41148 1.43298 1.52605 1.89418 2.38840 2.47773 2.64227 3.14757 3.20559 3.65893 3.66787 3.90737 3.93297 4.05799 4.10301 4.16406 4.27639 4.31334 4.42016 4.50110 4.59625 4.67007 4.70844 4.72415 4.77523 4.78445 4.91062 4.93386 4.99363 4.99998 5.09258 5.12141 5.13940 5.15835 5.21393 5.22348 5.33136 5.38439 5.46348 5.49086 5.58919 5.73097 5.85185 6.11717 6.22215 6.27598 6.79804 7.41679 8.90680 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.003797 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.151308 B = 7372.161662 C = 8150.296439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.086 3.914 4 H 0.055 0.945 5 C 0.087 3.913 6 N -1.007 6.007 7 S 2.788 3.212 8 O -1.011 7.011 9 O -1.003 7.003 10 N -0.997 5.997 11 C 0.092 3.908 12 C 0.274 3.726 13 H 0.024 0.976 14 C -0.131 4.131 15 C -0.541 4.541 16 H 0.056 0.944 17 C 0.019 3.981 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.275 1.275 23 C 0.085 3.915 24 C 0.079 3.921 25 H 0.054 0.946 26 C -0.110 4.110 27 C -0.146 4.146 28 O -0.368 6.368 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.265 0.735 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 3.391 11.444 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.027 3.973 4 H 0.073 0.927 5 C -0.039 4.039 6 N -0.848 5.848 7 S 2.800 3.200 8 O -0.995 6.995 9 O -0.987 6.987 10 N -0.838 5.838 11 C -0.053 4.053 12 C 0.170 3.830 13 H 0.042 0.958 14 C -0.191 4.191 15 C -0.581 4.581 16 H 0.074 0.926 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.040 4.040 24 C 0.019 3.981 25 H 0.072 0.928 26 C -0.148 4.148 27 C -0.203 4.203 28 O -0.287 6.287 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.950 3.646 10.759 19.582 hybrid contribution 1.419 -0.046 -0.826 1.643 sum -14.531 3.600 9.933 17.966 Atomic orbital electron populations 1.21655 0.94077 1.02306 1.01934 1.21551 0.97611 0.92356 1.03733 1.22458 0.91757 0.95757 0.87367 0.92749 1.22255 0.96372 0.81997 1.03240 1.58208 1.61693 1.24188 1.40677 1.01480 0.72841 0.72467 0.73247 1.93531 1.86347 1.75849 1.43750 1.93483 1.86584 1.31311 1.87320 1.57627 1.30822 1.33899 1.61458 1.21469 0.99599 0.91822 0.92416 1.18400 0.91755 0.80608 0.92245 0.95802 1.21881 0.99046 1.01139 0.97011 1.21641 1.07616 0.93234 1.35573 0.92567 1.25622 1.00875 0.94922 0.96671 1.69970 1.39194 0.99919 1.45975 0.85601 0.79932 0.77829 0.78540 1.19435 1.20850 1.20022 1.22375 0.96191 0.97537 0.87899 1.22584 0.92304 0.83186 0.99977 0.92782 1.21541 0.97261 1.01505 0.94517 1.21671 0.94577 1.01958 1.02084 1.87910 1.79339 1.23667 1.37758 0.93033 0.92399 0.91358 0.90333 0.89679 0.89763 0.89748 0.91511 0.90904 0.90965 0.94121 0.94894 0.91442 0.92576 0.88060 0.89183 0.90283 0.88779 0.91265 0.93069 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.81 71.98 0.71 -1.72 16 2 C -0.11 -2.27 5.64 30.59 0.17 -2.09 16 3 C 0.09 2.11 2.78 30.69 0.09 2.19 16 4 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 5 C 0.09 2.53 6.00 86.35 0.52 3.05 16 6 N -1.01 -31.30 3.40 -511.56 -1.74 -33.04 16 7 S 2.79 111.53 6.16 -56.49 -0.35 111.18 16 8 O -1.01 -48.51 15.32 -128.00 -1.96 -50.47 16 9 O -1.00 -40.86 15.36 -128.00 -1.97 -42.83 16 10 N -1.00 -41.44 3.12 -520.44 -1.62 -43.06 16 11 C 0.09 3.19 9.65 127.77 1.23 4.42 16 12 C 0.27 13.51 2.62 44.25 0.12 13.63 16 13 H 0.02 1.34 6.91 -2.39 -0.02 1.32 16 14 C -0.13 -5.89 8.97 71.98 0.65 -5.24 16 15 C -0.54 -29.36 7.99 25.60 0.20 -29.16 16 16 H 0.06 3.04 7.33 -2.91 -0.02 3.02 16 17 C 0.02 1.04 5.30 84.65 0.45 1.49 16 18 N -0.91 -50.86 11.32 21.45 0.24 -50.62 16 19 Si 0.96 43.18 29.54 68.60 2.03 45.20 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.08 2.07 6.00 86.35 0.52 2.58 16 24 C 0.08 1.71 2.78 30.69 0.09 1.80 16 25 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 26 C -0.11 -1.73 5.64 30.59 0.17 -1.56 16 27 C -0.15 -2.12 9.81 71.98 0.71 -1.42 16 28 O -0.37 -8.58 9.11 -148.98 -1.36 -9.93 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.03 7.83 -2.39 -0.02 1.01 16 31 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.08 2.78 6.94 -2.39 -0.02 2.76 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.67 7.02 -2.39 -0.02 2.65 16 38 H 0.07 2.32 7.02 -2.38 -0.02 2.30 16 39 H 0.04 1.71 7.67 -2.39 -0.02 1.69 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 3.39 6.07 -2.39 -0.01 3.38 16 42 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.10 2.40 6.95 -2.38 -0.02 2.38 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 Total: -1.00 -66.61 391.51 -0.21 -66.82 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.90 Total: 18.76 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.61 Total: -12.02 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -3.12 Total: -126.72 kcal Atomic # 8 Polarization: -97.95 SS G_CDS: -5.28 Total: -103.23 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 111.53 SS G_CDS: -0.35 Total: 111.18 kcal Total: -66.61 -0.21 -66.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420741926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.871 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds