Wall clock time and date at job start Tue Mar 31 2020 18:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 N 1.46902 * 109.47326 * 120.00081 * 2 1 3 5 5 C 1.46843 * 111.00051 * 174.99899 * 4 2 1 6 6 C 1.53041 * 109.52339 * 185.83671 * 5 4 2 7 7 C 1.53118 * 109.27796 * 300.82720 * 6 5 4 8 8 O 1.42906 * 109.52132 * 297.67981 * 7 6 5 9 9 C 1.53004 * 109.52079 * 177.55657 * 7 6 5 10 10 N 1.46499 * 109.47094 * 184.99784 * 9 7 6 11 11 S 1.65597 * 119.99926 * 165.27799 * 10 9 7 12 12 O 1.42100 * 104.27735 * 180.79571 * 11 10 9 13 13 O 1.42101 * 104.27674 * 308.65500 * 11 10 9 14 14 C 1.81402 * 104.45066 * 64.71997 * 11 10 9 15 15 C 1.53002 * 109.47127 * 180.02562 * 14 11 10 16 16 C 1.50698 * 109.47312 * 180.02562 * 15 14 11 17 17 H 1.08006 * 119.99731 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99831 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00228 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47307 * 89.99690 * 20 18 16 22 22 H 1.48502 * 109.46969 * 210.00097 * 20 18 16 23 23 H 1.48497 * 109.46659 * 329.99707 * 20 18 16 24 24 C 1.53118 * 109.16438 * 57.65471 * 7 6 5 25 25 C 1.46845 * 110.99827 * 299.21183 * 4 2 1 26 26 H 1.08997 * 109.47565 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46936 * 60.00279 * 1 2 3 28 28 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47048 * 240.00263 * 2 1 3 30 30 H 1.09011 * 109.46627 * 59.99623 * 3 2 1 31 31 H 1.08996 * 109.47310 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46899 * 300.00688 * 3 2 1 33 33 H 1.09003 * 109.45947 * 65.82508 * 5 4 2 34 34 H 1.08993 * 109.46723 * 305.85795 * 5 4 2 35 35 H 1.08999 * 109.50058 * 180.88294 * 6 5 4 36 36 H 1.08999 * 109.49592 * 60.76606 * 6 5 4 37 37 H 0.96698 * 113.99559 * 179.87925 * 8 7 6 38 38 H 1.09007 * 109.47007 * 64.99726 * 9 7 6 39 39 H 1.08995 * 109.47080 * 304.99970 * 9 7 6 40 40 H 0.97001 * 119.99790 * 344.99588 * 10 9 7 41 41 H 1.08990 * 109.47555 * 300.00369 * 14 11 10 42 42 H 1.09004 * 109.46533 * 60.00490 * 14 11 10 43 43 H 1.09004 * 109.47124 * 300.00530 * 15 14 11 44 44 H 1.08998 * 109.47317 * 60.00145 * 15 14 11 45 45 H 0.97008 * 119.99976 * 180.02562 * 19 18 16 46 46 H 1.08990 * 109.50501 * 62.28278 * 24 7 6 47 47 H 1.08998 * 109.50030 * 182.40869 * 24 7 6 48 48 H 1.08994 * 109.46454 * 294.17745 * 25 4 2 49 49 H 1.09006 * 109.46417 * 54.14531 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4827 -0.8164 1.1751 6 6 3.9438 -1.6664 2.3613 7 6 3.4906 -1.0032 3.6649 8 8 4.1064 0.2806 3.7867 9 6 3.8956 -1.8793 4.8520 10 7 3.3585 -1.3054 6.0882 11 16 3.3199 -2.2119 7.4735 12 8 2.7299 -1.3520 8.4387 13 8 2.6837 -3.4211 7.0833 14 6 5.0652 -2.5097 7.8684 15 6 5.1635 -3.3484 9.1443 16 6 6.6134 -3.5953 9.4727 17 1 7.3874 -3.1944 8.8349 18 6 6.9519 -4.3337 10.5867 19 7 6.0094 -4.8222 11.3631 20 14 8.7491 -4.6391 10.9942 21 1 9.2501 -3.5499 11.8703 22 1 8.8831 -5.9406 11.6967 23 1 9.5428 -4.6698 9.7395 24 6 1.9680 -0.8420 3.6439 25 6 1.5643 -0.0158 2.4205 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 3.9322 0.1743 1.2417 34 1 3.7914 -1.2933 0.2449 35 1 5.0309 -1.7451 2.3518 36 1 3.5056 -2.6617 2.2878 37 1 3.8620 0.7593 4.5906 38 1 4.9829 -1.9255 4.9152 39 1 3.4967 -2.8843 4.7147 40 1 3.0293 -0.3930 6.0963 41 1 5.5379 -3.0448 7.0450 42 1 5.5711 -1.5562 8.0201 43 1 4.6906 -2.8136 9.9680 44 1 4.6576 -4.3018 8.9922 45 1 6.2475 -5.3415 12.1471 46 1 1.4988 -1.8242 3.5907 47 1 1.6437 -0.3316 4.5508 48 1 2.0228 0.9711 2.4813 49 1 0.4796 0.0887 2.3949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443510432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:51 Heat of formation + Delta-G solvation = -134.838939 kcal Electronic energy + Delta-G solvation = -28073.051127 eV Core-core repulsion = 24161.620200 eV Total energy + Delta-G solvation = -3911.430927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38629 -37.86405 -36.61584 -35.48736 -34.40575 -33.91064 -33.75931 -31.23868 -31.16125 -30.27501 -27.57113 -26.43373 -25.62260 -23.78071 -22.67545 -21.68746 -20.73091 -19.60612 -19.08101 -17.75653 -16.98187 -16.53936 -16.25139 -16.15616 -15.44970 -15.38517 -15.00047 -14.89222 -14.62466 -14.52609 -14.38126 -13.92509 -13.67950 -13.38911 -13.18341 -12.90068 -12.65334 -12.54467 -12.26800 -12.09172 -11.87494 -11.76766 -11.71832 -11.62945 -11.58458 -11.54242 -11.39774 -11.21967 -11.09512 -10.98017 -10.93093 -10.51398 -10.43035 -10.40229 -10.05937 -9.81939 -9.53330 -9.05980 -8.51695 -8.50080 -6.13807 -4.19442 0.74435 3.06672 3.25294 3.31585 3.34273 3.56945 3.94772 4.18143 4.33536 4.37602 4.42148 4.51588 4.57466 4.70490 4.75623 4.93383 4.99237 5.06328 5.10369 5.21336 5.22389 5.25998 5.29734 5.38483 5.41557 5.45170 5.53346 5.56131 5.58319 5.62571 5.66141 5.71404 5.80734 5.85322 5.87309 5.89818 5.96003 6.07727 6.46397 6.85283 6.85294 6.92223 7.28106 7.34032 7.37431 7.79124 8.15884 8.83941 9.45424 10.97172 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025519 B = 0.002398 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.964701 B =11673.749698 C =12225.743296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.187 4.187 4 N -0.532 5.532 5 C 0.058 3.942 6 C -0.102 4.102 7 C 0.130 3.870 8 O -0.554 6.554 9 C 0.089 3.911 10 N -1.127 6.127 11 S 2.594 3.406 12 O -0.967 6.967 13 O -0.965 6.965 14 C -0.589 4.589 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.143 4.143 25 C 0.053 3.947 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.374 0.626 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.407 0.593 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.265 0.735 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.043 0.957 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 11.559 -23.357 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.245 4.245 4 N -0.256 5.256 5 C -0.070 4.070 6 C -0.141 4.141 7 C 0.088 3.912 8 O -0.359 6.359 9 C -0.038 4.038 10 N -0.885 5.885 11 S 2.692 3.308 12 O -0.958 6.958 13 O -0.955 6.955 14 C -0.722 4.722 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.181 4.181 25 C -0.074 4.074 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.221 0.779 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.240 0.760 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.501 10.328 -23.352 26.912 hybrid contribution 1.617 1.284 0.743 2.194 sum -6.884 11.612 -22.609 26.333 Atomic orbital electron populations 1.21882 0.94357 1.02507 1.01603 1.21677 0.95733 0.92409 0.93382 1.22480 1.01640 0.98169 1.02260 1.62206 1.10832 1.50883 1.01716 1.21995 0.87330 0.99427 0.98200 1.21577 1.01627 0.99282 0.91571 1.21402 0.91908 0.83555 0.94346 1.86549 1.72236 1.30435 1.46719 1.22014 0.99263 0.98490 0.83990 1.55823 1.79757 1.27936 1.25015 1.05541 0.79044 0.73782 0.72455 1.93555 1.76160 1.66380 1.59678 1.93544 1.73537 1.46910 1.81470 1.30434 1.20597 1.10471 1.10706 1.18965 1.00074 0.94158 0.87931 1.20996 0.90895 1.33996 1.10090 0.92052 1.25075 0.97942 0.95445 0.96079 1.69957 1.32446 1.35119 1.15299 0.86459 0.84451 0.77744 0.78568 1.20472 1.20999 1.19767 1.22256 0.95580 1.02531 0.97702 1.22090 1.00277 0.95859 0.89194 0.92518 0.92389 0.91760 0.90087 0.92320 0.92403 0.92279 0.93552 0.90891 0.90292 0.89335 0.77854 0.90672 0.89152 0.75971 0.86320 0.86096 0.94860 0.94806 0.92518 0.89621 0.90960 0.93900 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.99 37.16 0.33 -0.60 16 2 C 0.08 0.54 2.96 -67.71 -0.20 0.34 16 3 C -0.19 -1.26 8.50 37.16 0.32 -0.94 16 4 N -0.53 -4.43 4.64 -226.69 -1.05 -5.48 16 5 C 0.06 0.48 4.89 -3.83 -0.02 0.46 16 6 C -0.10 -0.87 5.11 -26.65 -0.14 -1.01 16 7 C 0.13 1.18 0.72 -90.50 -0.07 1.11 16 8 O -0.55 -5.02 11.85 -35.23 -0.42 -5.44 16 9 C 0.09 0.93 5.30 -4.04 -0.02 0.91 16 10 N -1.13 -13.04 5.27 -10.61 -0.06 -13.09 16 11 S 2.59 43.96 5.46 -107.50 -0.59 43.37 16 12 O -0.97 -19.30 18.08 -57.54 -1.04 -20.34 16 13 O -0.96 -19.30 17.51 -57.54 -1.01 -20.30 16 14 C -0.59 -10.90 6.00 37.16 0.22 -10.67 16 15 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 C -0.14 -1.28 4.82 -26.65 -0.13 -1.41 16 25 C 0.05 0.45 4.50 -3.83 -0.02 0.43 16 26 H 0.06 0.37 6.30 -51.93 -0.33 0.05 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.06 0.43 6.52 -51.92 -0.34 0.09 16 31 H 0.06 0.42 6.65 -51.93 -0.35 0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 6.35 -51.93 -0.33 0.10 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.37 2.52 7.92 45.56 0.36 2.88 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 40 H 0.41 3.75 6.71 -34.47 -0.23 3.51 16 41 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 42 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 0.61 7.00 -51.93 -0.36 0.25 16 48 H 0.04 0.37 6.24 -51.93 -0.32 0.05 16 49 H 0.08 0.61 6.03 -51.93 -0.31 0.30 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -34.88 387.49 -10.51 -45.40 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.64 Total: 3.47 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -0.26 Total: -23.90 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.37 Total: -44.22 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.47 Total: -46.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 43.96 SS G_CDS: -0.59 Total: 43.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.88 -10.51 -45.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443510432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.443 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds