Wall clock time and date at job start Tue Mar 31 2020 18:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 N 1.46902 * 109.47326 * 120.00081 * 2 1 3 5 5 C 1.46843 * 111.00051 * 174.99899 * 4 2 1 6 6 C 1.53041 * 109.52339 * 185.83671 * 5 4 2 7 7 C 1.53118 * 109.27796 * 300.82720 * 6 5 4 8 8 O 1.42906 * 109.52132 * 297.67981 * 7 6 5 9 9 C 1.53004 * 109.52079 * 177.55657 * 7 6 5 10 10 N 1.46499 * 109.47094 * 184.99784 * 9 7 6 11 11 S 1.65597 * 119.99926 * 165.27799 * 10 9 7 12 12 O 1.42100 * 104.27735 * 180.79571 * 11 10 9 13 13 O 1.42101 * 104.27674 * 308.65500 * 11 10 9 14 14 C 1.81402 * 104.45066 * 64.71997 * 11 10 9 15 15 C 1.53002 * 109.47127 * 180.02562 * 14 11 10 16 16 C 1.50698 * 109.47312 * 180.02562 * 15 14 11 17 17 H 1.08006 * 119.99731 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99831 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00228 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47307 * 89.99690 * 20 18 16 22 22 H 1.48502 * 109.46969 * 210.00097 * 20 18 16 23 23 H 1.48497 * 109.46659 * 329.99707 * 20 18 16 24 24 C 1.53118 * 109.16438 * 57.65471 * 7 6 5 25 25 C 1.46845 * 110.99827 * 299.21183 * 4 2 1 26 26 H 1.08997 * 109.47565 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46936 * 60.00279 * 1 2 3 28 28 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47048 * 240.00263 * 2 1 3 30 30 H 1.09011 * 109.46627 * 59.99623 * 3 2 1 31 31 H 1.08996 * 109.47310 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46899 * 300.00688 * 3 2 1 33 33 H 1.09003 * 109.45947 * 65.82508 * 5 4 2 34 34 H 1.08993 * 109.46723 * 305.85795 * 5 4 2 35 35 H 1.08999 * 109.50058 * 180.88294 * 6 5 4 36 36 H 1.08999 * 109.49592 * 60.76606 * 6 5 4 37 37 H 0.96698 * 113.99559 * 179.87925 * 8 7 6 38 38 H 1.09007 * 109.47007 * 64.99726 * 9 7 6 39 39 H 1.08995 * 109.47080 * 304.99970 * 9 7 6 40 40 H 0.97001 * 119.99790 * 344.99588 * 10 9 7 41 41 H 1.08990 * 109.47555 * 300.00369 * 14 11 10 42 42 H 1.09004 * 109.46533 * 60.00490 * 14 11 10 43 43 H 1.09004 * 109.47124 * 300.00530 * 15 14 11 44 44 H 1.08998 * 109.47317 * 60.00145 * 15 14 11 45 45 H 0.97008 * 119.99976 * 180.02562 * 19 18 16 46 46 H 1.08990 * 109.50501 * 62.28278 * 24 7 6 47 47 H 1.08998 * 109.50030 * 182.40869 * 24 7 6 48 48 H 1.08994 * 109.46454 * 294.17745 * 25 4 2 49 49 H 1.09006 * 109.46417 * 54.14531 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4827 -0.8164 1.1751 6 6 3.9438 -1.6664 2.3613 7 6 3.4906 -1.0032 3.6649 8 8 4.1064 0.2806 3.7867 9 6 3.8956 -1.8793 4.8520 10 7 3.3585 -1.3054 6.0882 11 16 3.3199 -2.2119 7.4735 12 8 2.7299 -1.3520 8.4387 13 8 2.6837 -3.4211 7.0833 14 6 5.0652 -2.5097 7.8684 15 6 5.1635 -3.3484 9.1443 16 6 6.6134 -3.5953 9.4727 17 1 7.3874 -3.1944 8.8349 18 6 6.9519 -4.3337 10.5867 19 7 6.0094 -4.8222 11.3631 20 14 8.7491 -4.6391 10.9942 21 1 9.2501 -3.5499 11.8703 22 1 8.8831 -5.9406 11.6967 23 1 9.5428 -4.6698 9.7395 24 6 1.9680 -0.8420 3.6439 25 6 1.5643 -0.0158 2.4205 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 3.9322 0.1743 1.2417 34 1 3.7914 -1.2933 0.2449 35 1 5.0309 -1.7451 2.3518 36 1 3.5056 -2.6617 2.2878 37 1 3.8620 0.7593 4.5906 38 1 4.9829 -1.9255 4.9152 39 1 3.4967 -2.8843 4.7147 40 1 3.0293 -0.3930 6.0963 41 1 5.5379 -3.0448 7.0450 42 1 5.5711 -1.5562 8.0201 43 1 4.6906 -2.8136 9.9680 44 1 4.6576 -4.3018 8.9922 45 1 6.2475 -5.3415 12.1471 46 1 1.4988 -1.8242 3.5907 47 1 1.6437 -0.3316 4.5508 48 1 2.0228 0.9711 2.4813 49 1 0.4796 0.0887 2.3949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443510432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:50 Heat of formation + Delta-G solvation = -163.599532 kcal Electronic energy + Delta-G solvation = -28074.298280 eV Core-core repulsion = 24161.620200 eV Total energy + Delta-G solvation = -3912.678080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07086 -38.56602 -38.12400 -37.01081 -35.88819 -35.34658 -34.40326 -33.11835 -31.88599 -30.97726 -28.09345 -27.58700 -27.23553 -24.46755 -23.57187 -23.39679 -21.38528 -20.38705 -20.23704 -19.18047 -18.52683 -17.63183 -17.20402 -17.10144 -16.89089 -16.52217 -16.23823 -15.98408 -15.67897 -15.37516 -15.07940 -15.01903 -14.59411 -14.51223 -14.38666 -13.82371 -13.72357 -13.53649 -13.38072 -13.21838 -13.15168 -13.03642 -12.93081 -12.83185 -12.76410 -12.66328 -12.38262 -12.23835 -12.23624 -12.13476 -11.98131 -11.87366 -11.73706 -11.52578 -11.25491 -11.13511 -10.79795 -10.64581 -10.34927 -9.12869 -8.25972 -6.39751 -0.67818 1.41029 1.42630 1.53739 1.83406 2.38007 2.80920 2.96492 3.07508 3.23142 3.33345 3.59650 3.73985 3.82820 3.96546 4.03590 4.14941 4.16925 4.31927 4.34534 4.41375 4.44432 4.50470 4.57207 4.70465 4.73101 4.75807 4.78594 4.84934 4.89194 4.92262 4.97404 5.04174 5.10530 5.18928 5.19824 5.28362 5.29361 5.30988 5.36939 5.45039 5.68776 6.03331 6.07047 6.22776 6.25703 6.74101 6.77496 7.30395 8.86164 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025519 B = 0.002398 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.964701 B =11673.749698 C =12225.743296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.180 4.180 4 N -0.540 5.540 5 C 0.061 3.939 6 C -0.105 4.105 7 C 0.139 3.861 8 O -0.559 6.559 9 C 0.081 3.919 10 N -1.105 6.105 11 S 2.626 3.374 12 O -0.998 6.998 13 O -0.995 6.995 14 C -0.589 4.589 15 C 0.019 3.981 16 C -0.538 4.538 17 H 0.075 0.925 18 C -0.005 4.005 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.258 1.258 24 C -0.144 4.144 25 C 0.057 3.943 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.384 0.616 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.422 0.578 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.006 0.994 44 H 0.007 0.993 45 H 0.267 0.733 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.041 0.959 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 12.639 -25.168 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.239 4.239 4 N -0.264 5.264 5 C -0.066 4.066 6 C -0.143 4.143 7 C 0.096 3.904 8 O -0.366 6.366 9 C -0.045 4.045 10 N -0.867 5.867 11 S 2.722 3.278 12 O -0.988 6.988 13 O -0.985 6.985 14 C -0.721 4.721 15 C -0.020 4.020 16 C -0.577 4.577 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.182 1.182 24 C -0.183 4.183 25 C -0.070 4.070 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.259 0.741 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.059 0.941 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.284 11.431 -25.165 28.583 hybrid contribution 1.183 0.989 1.223 1.968 sum -6.102 12.419 -23.941 27.652 Atomic orbital electron populations 1.21853 0.93871 1.02198 1.02081 1.21742 0.96115 0.92557 0.92985 1.22413 1.01149 0.97915 1.02447 1.62226 1.10882 1.51245 1.02090 1.21965 0.87274 0.98947 0.98449 1.21620 1.02039 0.99323 0.91346 1.21301 0.91854 0.83408 0.93826 1.86545 1.72251 1.30299 1.47537 1.22268 1.00089 0.98624 0.83522 1.55230 1.79551 1.28313 1.23654 1.04303 0.77733 0.73064 0.72662 1.93508 1.76561 1.67005 1.61759 1.93505 1.73921 1.48929 1.82168 1.30342 1.22992 1.10644 1.08139 1.18823 0.98872 0.93829 0.90437 1.21519 0.92245 1.33628 1.10294 0.90638 1.26122 1.02925 0.95241 0.96075 1.70103 1.35027 1.36208 1.16019 0.85315 0.78534 0.77594 0.78828 1.19669 1.20893 1.18154 1.22272 0.95549 1.02115 0.98333 1.22038 1.00421 0.95536 0.89040 0.92773 0.91192 0.92428 0.89735 0.92902 0.93024 0.91287 0.94388 0.90073 0.89726 0.89270 0.76682 0.89257 0.89623 0.74123 0.84042 0.83910 0.97575 0.97460 0.92422 0.90717 0.90487 0.94099 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.99 71.98 0.65 -0.98 16 2 C 0.07 0.94 2.96 44.91 0.13 1.07 16 3 C -0.18 -2.16 8.50 71.98 0.61 -1.55 16 4 N -0.54 -8.24 4.64 -871.12 -4.04 -12.29 16 5 C 0.06 0.92 4.89 86.33 0.42 1.34 16 6 C -0.11 -1.61 5.11 30.65 0.16 -1.45 16 7 C 0.14 2.24 0.72 -10.71 -0.01 2.24 16 8 O -0.56 -8.83 11.85 -148.98 -1.77 -10.59 16 9 C 0.08 1.53 5.30 86.38 0.46 1.99 16 10 N -1.10 -23.57 5.27 -187.48 -0.99 -24.55 16 11 S 2.63 87.65 5.46 -56.49 -0.31 87.34 16 12 O -1.00 -39.71 18.08 -127.65 -2.31 -42.02 16 13 O -1.00 -39.87 17.51 -127.65 -2.24 -42.10 16 14 C -0.59 -21.29 6.00 71.98 0.43 -20.86 16 15 C 0.02 0.99 4.98 29.85 0.15 1.14 16 16 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 17 H 0.08 3.82 7.74 -2.91 -0.02 3.79 16 18 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 19 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 20 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 24 C -0.14 -2.39 4.82 30.65 0.15 -2.24 16 25 C 0.06 0.88 4.50 86.33 0.39 1.27 16 26 H 0.05 0.64 6.30 -2.39 -0.02 0.63 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.05 0.69 6.52 -2.38 -0.02 0.68 16 31 H 0.05 0.68 6.65 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 0.64 6.35 -2.39 -0.02 0.62 16 34 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.38 4.19 7.92 -74.06 -0.59 3.60 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.09 1.76 7.71 -2.39 -0.02 1.74 16 40 H 0.42 6.84 6.71 -96.74 -0.65 6.19 16 41 H 0.14 4.41 8.14 -2.40 -0.02 4.39 16 42 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 43 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.17 7.00 -2.39 -0.02 1.15 16 48 H 0.04 0.65 6.24 -2.39 -0.01 0.64 16 49 H 0.08 1.17 6.03 -2.38 -0.01 1.16 16 Total: -1.00 -75.56 387.49 -5.39 -80.95 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.29 Total: 21.67 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 4.23 Total: -47.15 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -4.75 Total: -93.22 kcal Atomic # 8 Polarization: -88.41 SS G_CDS: -6.31 Total: -94.71 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 87.65 SS G_CDS: -0.31 Total: 87.34 kcal Total: -75.56 -5.39 -80.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443510432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.651 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds