Wall clock time and date at job start Tue Mar 31 2020 17:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47135 * 2 1 4 4 C 1.50700 * 109.47279 * 239.99905 * 2 1 3 5 5 H 1.08000 * 120.00277 * 240.00207 * 4 2 1 6 6 C 1.37878 * 119.99848 * 59.99608 * 4 2 1 7 7 N 1.31520 * 119.99962 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46852 * 59.99973 * 8 6 4 10 10 H 1.48498 * 109.47309 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46872 * 300.00441 * 8 6 4 12 12 C 1.53002 * 109.47062 * 120.00140 * 2 1 3 13 13 S 1.81404 * 109.46881 * 299.99747 * 12 2 1 14 14 O 1.42094 * 110.54157 * 68.38160 * 13 12 2 15 15 O 1.42097 * 110.54422 * 291.62177 * 13 12 2 16 16 N 1.65603 * 104.44568 * 179.97438 * 13 12 2 17 17 C 1.46501 * 119.99863 * 65.00539 * 16 13 12 18 18 C 1.53006 * 109.47109 * 164.99583 * 17 16 13 19 19 C 1.53002 * 109.46808 * 179.97438 * 18 17 16 20 20 N 1.46908 * 109.46707 * 179.97438 * 19 18 17 21 21 C 1.47024 * 110.99261 * 46.32476 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00016 * 20 19 18 26 26 H 1.09001 * 109.46997 * 299.99603 * 1 2 3 27 27 H 1.08999 * 109.47204 * 59.99622 * 1 2 3 28 28 H 1.09003 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47343 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47383 * 300.00268 * 3 2 1 31 31 H 1.09002 * 109.47375 * 60.00359 * 3 2 1 32 32 H 0.96998 * 120.00142 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47088 * 180.02562 * 12 2 1 34 34 H 1.08993 * 109.47298 * 60.00048 * 12 2 1 35 35 H 0.96997 * 120.00472 * 244.99536 * 16 13 12 36 36 H 1.09002 * 109.47542 * 44.99927 * 17 16 13 37 37 H 1.08999 * 109.46822 * 284.99337 * 17 16 13 38 38 H 1.09002 * 109.46638 * 59.99790 * 18 17 16 39 39 H 1.08999 * 109.47077 * 299.99598 * 18 17 16 40 40 H 1.09003 * 109.46906 * 60.00364 * 19 18 17 41 41 H 1.08999 * 109.47302 * 299.99863 * 19 18 17 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8268 -0.4200 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0530 -0.7409 3.9936 17 6 3.5014 -0.7982 4.2060 18 6 3.7902 -1.3347 5.6095 19 6 5.3029 -1.3951 5.8310 20 7 5.5802 -1.9096 7.1788 21 6 4.7641 -3.0981 7.4671 22 6 5.0408 -3.5652 8.8986 23 8 6.4401 -3.8183 9.0509 24 6 7.2638 -2.6814 8.7787 25 6 7.0105 -2.2058 7.3456 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7094 1.1618 -3.4843 33 1 3.1300 -0.7209 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 1.4558 -1.2152 4.5930 36 1 3.9233 0.2018 4.1054 37 1 3.9513 -1.4587 3.4648 38 1 3.3683 -2.3347 5.7101 39 1 3.3402 -0.6741 6.3506 40 1 5.7251 -0.3952 5.7302 41 1 5.7525 -2.0558 5.0898 42 1 5.0216 -3.8939 6.7683 43 1 3.7080 -2.8491 7.3633 44 1 4.4818 -4.4796 9.0976 45 1 4.7326 -2.7902 9.6004 46 1 7.0204 -1.8801 9.4764 47 1 8.3125 -2.9563 8.8915 48 1 7.5935 -1.3054 7.1525 49 1 7.3044 -2.9877 6.6454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450968825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:13 Heat of formation + Delta-G solvation = -116.861257 kcal Electronic energy + Delta-G solvation = -27699.693982 eV Core-core repulsion = 23789.042626 eV Total energy + Delta-G solvation = -3910.651356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.00363 -37.18683 -36.52529 -36.28711 -35.41407 -35.18725 -31.78902 -31.67970 -31.10704 -27.60683 -26.64074 -25.72777 -25.24732 -24.60270 -24.10508 -21.75923 -20.62686 -19.57523 -18.74996 -17.28890 -17.14200 -16.51205 -16.13927 -15.94288 -15.85373 -15.48159 -15.30987 -15.24768 -14.75285 -14.67392 -14.55344 -14.00460 -13.27645 -13.04579 -12.91747 -12.89366 -12.52362 -12.49658 -12.19336 -12.09255 -11.80673 -11.61431 -11.45155 -11.35239 -11.13433 -11.07726 -11.06298 -10.96459 -10.84108 -10.71432 -10.41694 -10.28664 -10.13016 -10.06196 -9.67099 -9.64348 -9.27390 -8.78601 -8.69404 -8.41495 -6.04900 -4.17115 0.85161 3.14442 3.25288 3.31047 3.32344 3.35517 3.51093 4.27520 4.36433 4.42189 4.52480 4.57157 4.66573 4.74235 4.75322 4.81958 4.90264 4.96099 5.11743 5.20145 5.21559 5.25774 5.32836 5.37980 5.40245 5.47331 5.55035 5.58782 5.68540 5.77682 5.86537 6.05396 6.35992 6.52695 6.54740 6.68810 6.73691 6.78361 6.89438 7.00726 7.11019 7.30195 7.49142 7.66060 7.96830 8.07988 8.31419 8.81071 9.48256 10.96356 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.002357 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.034569 B =11878.920826 C =12688.297638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.595 3.405 14 O -0.965 6.965 15 O -0.964 6.964 16 N -1.131 6.131 17 C 0.116 3.884 18 C -0.129 4.129 19 C 0.054 3.946 20 N -0.537 5.537 21 C 0.009 3.991 22 C 0.063 3.937 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.016 3.984 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -7.064 20.067 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.954 6.954 16 N -0.888 5.888 17 C -0.011 4.011 18 C -0.168 4.168 19 C -0.074 4.074 20 N -0.262 5.262 21 C -0.119 4.119 22 C -0.014 4.014 23 O -0.306 6.306 24 C -0.013 4.013 25 C -0.112 4.112 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.106 0.894 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.131 -5.867 20.319 23.035 hybrid contribution 0.619 -1.639 -1.649 2.406 sum 9.750 -7.506 18.670 22.360 Atomic orbital electron populations 1.22277 0.96913 1.00628 1.02343 1.17924 0.92835 0.92211 0.89048 1.22275 0.99680 0.97805 1.02382 1.20899 1.31804 1.12091 0.89431 0.92410 1.24942 0.94892 0.94988 0.98923 1.69791 1.36220 1.22521 1.23602 0.86595 0.79122 0.79706 0.82172 1.20298 1.21168 1.20297 1.30519 1.11169 1.12872 1.16982 1.05573 0.74356 0.75218 0.75598 1.93552 1.29548 1.86682 1.85773 1.93538 1.78138 1.38197 1.85520 1.55835 1.13950 1.71269 1.47730 1.21194 0.80611 1.02170 0.97123 1.21915 0.95703 1.02302 0.96927 1.22136 0.96054 1.00962 0.88230 1.62283 1.05389 1.30731 1.27821 1.22935 0.99633 0.91786 0.97551 1.22693 0.82202 1.01354 0.95177 1.87986 1.17063 1.35598 1.89962 1.22663 0.95264 0.88832 0.94585 1.22804 0.89391 1.01058 0.97933 0.95345 0.88641 0.94487 0.94504 0.88657 0.95285 0.92667 0.86544 0.86312 0.75654 0.90020 0.91864 0.90970 0.90019 0.89717 0.94064 0.93777 0.88781 0.88438 0.92208 0.92202 0.88442 0.89395 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 4 C -0.50 -13.09 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -24.01 9.35 55.43 0.52 -23.49 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C -0.58 -11.07 5.01 37.16 0.19 -10.88 16 13 S 2.59 46.73 4.49 -107.50 -0.48 46.25 16 14 O -0.97 -19.94 15.70 -57.54 -0.90 -20.84 16 15 O -0.96 -19.85 15.12 -57.54 -0.87 -20.72 16 16 N -1.13 -14.47 5.89 -10.61 -0.06 -14.53 16 17 C 0.12 1.24 6.13 -4.04 -0.02 1.22 16 18 C -0.13 -1.09 4.62 -26.73 -0.12 -1.21 16 19 C 0.05 0.44 5.28 -3.82 -0.02 0.42 16 20 N -0.54 -4.38 4.88 -234.29 -1.14 -5.52 16 21 C 0.01 0.07 4.94 -3.70 -0.02 0.05 16 22 C 0.06 0.46 7.01 37.21 0.26 0.72 16 23 O -0.39 -3.52 10.83 -35.23 -0.38 -3.90 16 24 C 0.06 0.45 7.01 37.21 0.26 0.71 16 25 C 0.02 0.12 5.63 -3.71 -0.02 0.10 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 27 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 31 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 34 H 0.12 2.06 8.14 -51.93 -0.42 1.63 16 35 H 0.41 4.40 8.62 -34.48 -0.30 4.10 16 36 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.54 6.28 -51.93 -0.33 0.21 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.63 6.05 -51.93 -0.31 0.31 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -32.51 381.79 -10.38 -42.89 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.41 Total: 4.81 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 0.63 Total: -26.19 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.69 Total: -43.54 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -2.15 Total: -45.46 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 46.73 SS G_CDS: -0.48 Total: 46.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.51 -10.38 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450968825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.972 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds