Wall clock time and date at job start Tue Mar 31 2020 17:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47135 * 2 1 4 4 C 1.50700 * 109.47279 * 239.99905 * 2 1 3 5 5 H 1.08000 * 120.00277 * 240.00207 * 4 2 1 6 6 C 1.37878 * 119.99848 * 59.99608 * 4 2 1 7 7 N 1.31520 * 119.99962 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46852 * 59.99973 * 8 6 4 10 10 H 1.48498 * 109.47309 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46872 * 300.00441 * 8 6 4 12 12 C 1.53002 * 109.47062 * 120.00140 * 2 1 3 13 13 S 1.81404 * 109.46881 * 299.99747 * 12 2 1 14 14 O 1.42094 * 110.54157 * 68.38160 * 13 12 2 15 15 O 1.42097 * 110.54422 * 291.62177 * 13 12 2 16 16 N 1.65603 * 104.44568 * 179.97438 * 13 12 2 17 17 C 1.46501 * 119.99863 * 65.00539 * 16 13 12 18 18 C 1.53006 * 109.47109 * 164.99583 * 17 16 13 19 19 C 1.53002 * 109.46808 * 179.97438 * 18 17 16 20 20 N 1.46908 * 109.46707 * 179.97438 * 19 18 17 21 21 C 1.47024 * 110.99261 * 46.32476 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00016 * 20 19 18 26 26 H 1.09001 * 109.46997 * 299.99603 * 1 2 3 27 27 H 1.08999 * 109.47204 * 59.99622 * 1 2 3 28 28 H 1.09003 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47343 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47383 * 300.00268 * 3 2 1 31 31 H 1.09002 * 109.47375 * 60.00359 * 3 2 1 32 32 H 0.96998 * 120.00142 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47088 * 180.02562 * 12 2 1 34 34 H 1.08993 * 109.47298 * 60.00048 * 12 2 1 35 35 H 0.96997 * 120.00472 * 244.99536 * 16 13 12 36 36 H 1.09002 * 109.47542 * 44.99927 * 17 16 13 37 37 H 1.08999 * 109.46822 * 284.99337 * 17 16 13 38 38 H 1.09002 * 109.46638 * 59.99790 * 18 17 16 39 39 H 1.08999 * 109.47077 * 299.99598 * 18 17 16 40 40 H 1.09003 * 109.46906 * 60.00364 * 19 18 17 41 41 H 1.08999 * 109.47302 * 299.99863 * 19 18 17 42 42 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 43 43 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 44 44 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 45 45 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 46 46 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 47 47 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 48 48 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 49 49 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8268 -0.4200 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0530 -0.7409 3.9936 17 6 3.5014 -0.7982 4.2060 18 6 3.7902 -1.3347 5.6095 19 6 5.3029 -1.3951 5.8310 20 7 5.5802 -1.9096 7.1788 21 6 4.7641 -3.0981 7.4671 22 6 5.0408 -3.5652 8.8986 23 8 6.4401 -3.8183 9.0509 24 6 7.2638 -2.6814 8.7787 25 6 7.0105 -2.2058 7.3456 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7094 1.1618 -3.4843 33 1 3.1300 -0.7209 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 1.4558 -1.2152 4.5930 36 1 3.9233 0.2018 4.1054 37 1 3.9513 -1.4587 3.4648 38 1 3.3683 -2.3347 5.7101 39 1 3.3402 -0.6741 6.3506 40 1 5.7251 -0.3952 5.7302 41 1 5.7525 -2.0558 5.0898 42 1 5.0216 -3.8939 6.7683 43 1 3.7080 -2.8491 7.3633 44 1 4.4818 -4.4796 9.0976 45 1 4.7326 -2.7902 9.6004 46 1 7.0204 -1.8801 9.4764 47 1 8.3125 -2.9563 8.8915 48 1 7.5935 -1.3054 7.1525 49 1 7.3044 -2.9877 6.6454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450968825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:12 Heat of formation + Delta-G solvation = -141.563397 kcal Electronic energy + Delta-G solvation = -27700.765147 eV Core-core repulsion = 23789.042626 eV Total energy + Delta-G solvation = -3911.722521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57716 -38.17549 -38.11056 -37.79084 -36.87973 -36.12926 -33.62709 -32.41008 -31.80164 -28.39570 -28.17390 -27.68002 -27.24193 -25.21434 -24.80346 -22.44643 -21.40058 -21.15108 -20.16823 -18.70951 -17.91684 -17.79752 -17.12763 -17.07217 -16.93523 -16.60856 -16.51436 -16.02336 -15.87815 -15.79210 -15.33012 -14.97391 -14.78020 -14.59155 -14.40960 -13.89773 -13.83172 -13.64138 -13.29570 -13.05852 -13.01725 -12.88206 -12.85783 -12.78587 -12.50181 -12.42242 -12.28048 -12.19623 -12.15360 -12.03994 -11.95795 -11.73688 -11.55367 -11.43796 -11.34100 -10.68808 -10.64702 -10.40690 -10.28251 -9.37528 -8.02540 -6.21223 -0.58604 1.45246 1.45697 1.52816 1.92302 2.44246 2.74225 2.88006 2.99003 3.19604 3.35150 3.83340 3.90003 3.95066 4.04253 4.06773 4.10040 4.20519 4.22229 4.33252 4.37900 4.54813 4.56839 4.61584 4.64985 4.68286 4.75848 4.82641 4.84696 4.87813 4.88861 4.95727 5.00574 5.02610 5.10023 5.18451 5.27518 5.39957 5.51949 5.64967 5.95776 5.96646 5.98588 6.12180 6.16012 6.19616 6.34769 6.83575 7.47022 8.97025 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.002357 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.034569 B =11878.920826 C =12688.297638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.271 1.271 12 C -0.586 4.586 13 S 2.615 3.385 14 O -0.994 6.994 15 O -0.992 6.992 16 N -1.113 6.113 17 C 0.106 3.894 18 C -0.120 4.120 19 C 0.055 3.945 20 N -0.546 5.546 21 C 0.009 3.991 22 C 0.060 3.940 23 O -0.409 6.409 24 C 0.061 3.939 25 C 0.016 3.984 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.423 0.577 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.112 0.888 48 H 0.098 0.902 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.851 -8.518 21.071 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.719 4.719 13 S 2.713 3.287 14 O -0.984 6.984 15 O -0.981 6.981 16 N -0.875 5.875 17 C -0.021 4.021 18 C -0.159 4.159 19 C -0.073 4.073 20 N -0.271 5.271 21 C -0.119 4.119 22 C -0.017 4.017 23 O -0.328 6.328 24 C -0.015 4.015 25 C -0.112 4.112 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.259 0.741 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.130 0.870 48 H 0.116 0.884 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.302 -7.330 21.326 24.792 hybrid contribution 0.283 -1.189 -1.881 2.243 sum 10.585 -8.519 19.444 23.722 Atomic orbital electron populations 1.22215 0.97853 1.00464 1.01332 1.17918 0.92279 0.92180 0.90971 1.22206 0.99862 0.98366 1.01349 1.21271 1.31652 1.12292 0.90405 0.91838 1.25685 0.95224 0.95672 1.01688 1.69941 1.37172 1.23669 1.23879 0.85679 0.78753 0.78693 0.78875 1.19772 1.21435 1.19663 1.30450 1.12608 1.13371 1.15435 1.04640 0.73414 0.74860 0.75835 1.93506 1.31588 1.87076 1.86272 1.93501 1.78475 1.40161 1.85998 1.55331 1.15296 1.70748 1.46099 1.21474 0.78891 1.02533 0.99172 1.21832 0.96088 1.02796 0.95230 1.22109 0.95660 1.01125 0.88397 1.62304 1.05951 1.31111 1.27760 1.22965 1.00035 0.91405 0.97496 1.22808 0.81677 1.02101 0.95096 1.87956 1.17989 1.36689 1.90129 1.22788 0.95878 0.88451 0.94431 1.22838 0.89091 1.01334 0.97913 0.94858 0.91134 0.94144 0.94019 0.91187 0.94799 0.92953 0.84428 0.84462 0.74069 0.90725 0.90102 0.89645 0.90275 0.89678 0.93776 0.94361 0.87877 0.87135 0.92136 0.92104 0.86973 0.88395 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.92 7.78 71.98 0.56 -7.37 16 2 C 0.07 3.25 0.52 -52.93 -0.03 3.22 16 3 C -0.16 -7.83 7.77 71.98 0.56 -7.27 16 4 C -0.52 -26.50 8.01 25.60 0.21 -26.30 16 5 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 6 C 0.02 0.88 5.15 84.65 0.44 1.31 16 7 N -0.91 -50.07 9.35 21.45 0.20 -49.86 16 8 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 C -0.59 -21.19 5.01 71.98 0.36 -20.83 16 13 S 2.62 90.38 4.49 -56.49 -0.25 90.12 16 14 O -0.99 -40.07 15.70 -127.65 -2.00 -42.07 16 15 O -0.99 -39.86 15.12 -127.65 -1.93 -41.79 16 16 N -1.11 -25.76 5.89 -187.48 -1.10 -26.87 16 17 C 0.11 1.98 6.13 86.38 0.53 2.51 16 18 C -0.12 -1.70 4.62 30.60 0.14 -1.56 16 19 C 0.06 0.76 5.28 86.30 0.46 1.22 16 20 N -0.55 -7.85 4.88 -895.15 -4.36 -12.22 16 21 C 0.01 0.12 4.94 86.31 0.43 0.54 16 22 C 0.06 0.78 7.01 72.02 0.50 1.28 16 23 O -0.41 -6.88 10.83 -148.98 -1.61 -8.50 16 24 C 0.06 0.77 7.01 72.02 0.50 1.27 16 25 C 0.02 0.21 5.63 86.31 0.49 0.69 16 26 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 27 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 31 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 32 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 34 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 35 H 0.42 7.92 8.62 -96.74 -0.83 7.09 16 36 H 0.07 1.54 7.70 -2.39 -0.02 1.52 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.00 6.28 -2.39 -0.01 0.98 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 0.59 8.08 -2.39 -0.02 0.57 16 42 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.10 1.12 6.05 -2.39 -0.01 1.10 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -68.88 381.79 -3.80 -72.68 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.10 Total: 26.02 kcal Atomic # 6 Polarization: -56.41 SS G_CDS: 5.14 Total: -51.27 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -5.27 Total: -88.95 kcal Atomic # 8 Polarization: -86.82 SS G_CDS: -5.55 Total: -92.36 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 90.38 SS G_CDS: -0.25 Total: 90.12 kcal Total: -68.88 -3.80 -72.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450968825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.883 kcal (2) G-P(sol) polarization free energy of solvation -68.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds