Wall clock time and date at job start Tue Mar 31 2020 17:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 H 1.09000 * 109.46958 * 305.00047 * 3 2 1 5 5 C 1.52991 * 109.47181 * 65.00111 * 3 2 1 6 6 C 1.52999 * 109.46761 * 184.99925 * 3 2 1 7 7 H 1.09000 * 109.47069 * 60.00657 * 6 3 2 8 8 O 1.42894 * 109.47404 * 299.99778 * 6 3 2 9 9 C 1.53001 * 109.46761 * 180.02562 * 6 3 2 10 10 N 1.46503 * 109.47377 * 185.00218 * 9 6 3 11 11 C 1.34776 * 120.00043 * 180.27421 * 10 9 6 12 12 O 1.21358 * 120.00315 * 359.72311 * 11 10 9 13 13 C 1.49356 * 119.99862 * 179.72500 * 11 10 9 14 14 O 1.21378 * 119.99899 * 0.02562 * 13 11 10 15 15 N 1.34772 * 120.00330 * 180.02562 * 13 11 10 16 16 C 1.39742 * 120.00459 * 174.89098 * 15 13 11 17 17 C 1.39342 * 119.95712 * 145.76124 * 16 15 13 18 18 C 1.38462 * 120.42559 * 179.97438 * 17 16 15 19 19 C 1.37697 * 120.32974 * 359.97438 * 18 17 16 20 20 C 1.40746 * 119.89512 * 0.02562 * 19 18 17 21 21 C 1.41411 * 120.20855 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00136 * 205.17924 * 21 20 19 23 23 C 1.39932 * 119.99687 * 25.18933 * 21 20 19 24 24 N 1.30830 * 120.00104 * 16.78378 * 23 21 20 25 25 Si 1.86796 * 119.99825 * 196.78907 * 23 21 20 26 26 H 1.48504 * 109.47394 * 59.99602 * 25 23 21 27 27 H 1.48501 * 109.47196 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47367 * 299.99441 * 25 23 21 29 29 C 1.38302 * 119.94873 * 325.48383 * 16 15 13 30 30 H 1.08998 * 109.47227 * 299.99786 * 1 2 3 31 31 H 1.08997 * 109.47348 * 59.99957 * 1 2 3 32 32 H 1.08999 * 109.47542 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46958 * 239.99578 * 2 1 3 34 34 H 1.08999 * 109.46878 * 120.00272 * 2 1 3 35 35 H 1.09001 * 109.47265 * 59.99550 * 5 3 2 36 36 H 1.08996 * 109.47657 * 180.02562 * 5 3 2 37 37 H 1.09008 * 109.47326 * 300.00088 * 5 3 2 38 38 H 0.96698 * 114.00368 * 300.00305 * 8 6 3 39 39 H 1.09002 * 109.47251 * 64.99767 * 9 6 3 40 40 H 1.09006 * 109.47332 * 304.99816 * 9 6 3 41 41 H 0.96996 * 119.99355 * 0.02562 * 10 9 6 42 42 H 0.97002 * 119.99448 * 354.88349 * 15 13 11 43 43 H 1.08007 * 119.78187 * 359.95471 * 17 16 15 44 44 H 1.08002 * 119.83437 * 179.97438 * 18 17 16 45 45 H 1.07995 * 120.05262 * 179.97438 * 19 18 17 46 46 H 0.96996 * 120.00012 * 180.02562 * 24 23 21 47 47 H 1.07993 * 120.16807 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 3.8531 0.9569 -1.0571 8 8 4.1346 0.7375 0.9779 9 6 4.0749 2.8866 -0.1251 10 7 5.5202 2.8937 -0.3649 11 6 6.1915 4.0618 -0.4017 12 8 5.5980 5.1081 -0.2411 13 6 7.6658 4.0686 -0.6401 14 8 8.2594 3.0222 -0.8013 15 7 8.3373 5.2366 -0.6764 16 6 9.7299 5.2387 -0.7925 17 6 10.3667 6.2492 -1.5102 18 6 11.7460 6.2611 -1.6310 19 6 12.5041 5.2739 -1.0421 20 6 11.8751 4.2467 -0.3140 21 6 12.6471 3.2292 0.2930 22 1 12.2081 2.2621 0.4885 23 6 13.9800 3.4757 0.6406 24 7 14.4197 4.7056 0.7163 25 14 15.1316 2.0486 0.9965 26 1 15.2286 1.1795 -0.2038 27 1 16.4785 2.5726 1.3378 28 1 14.6034 1.2590 2.1379 29 6 10.4745 4.2411 -0.1899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.0699 1.5874 2.1491 36 1 1.9982 3.1543 1.3072 37 1 0.5489 2.1252 1.3969 38 1 3.9190 1.1164 1.8411 39 1 3.8646 3.3460 0.8408 40 1 3.5733 3.4498 -0.9121 41 1 5.9944 2.0575 -0.4937 42 1 7.8538 6.0758 -0.6220 43 1 9.7805 7.0279 -1.9755 44 1 12.2297 7.0486 -2.1898 45 1 13.5796 5.2873 -1.1395 46 1 15.3437 4.8764 0.9569 47 1 9.9825 3.4597 0.3700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453657039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:07 Heat of formation + Delta-G solvation = -116.416522 kcal Electronic energy + Delta-G solvation = -27876.011072 eV Core-core repulsion = 23829.935050 eV Total energy + Delta-G solvation = -4046.076022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.64614 -39.43595 -38.45892 -37.11707 -35.34458 -34.87902 -34.21882 -33.02074 -30.84612 -29.86714 -28.77541 -28.20636 -26.09378 -25.34692 -24.17705 -22.31568 -21.28035 -20.89558 -20.40439 -19.69169 -18.49148 -17.65702 -17.09212 -16.52118 -16.43590 -15.77848 -15.50239 -15.30216 -15.09951 -14.85869 -14.68530 -14.52305 -14.16201 -13.92410 -13.68342 -13.16654 -12.99782 -12.90617 -12.66306 -12.49570 -12.20645 -12.12871 -11.91883 -11.73656 -11.57193 -11.43753 -11.27062 -11.12386 -11.09560 -10.92326 -10.89857 -10.50918 -10.33549 -10.10236 -9.70032 -9.44766 -9.38546 -9.09880 -9.01626 -7.49361 -6.99804 -6.74056 -4.36333 1.52496 2.45158 2.77258 2.93017 3.08335 3.11835 3.21418 3.55850 3.77144 3.95139 4.02224 4.14471 4.34698 4.40816 4.62308 4.65005 4.72644 4.77978 4.96866 5.01589 5.09772 5.18363 5.31895 5.46768 5.51466 5.57604 5.58618 5.65984 5.67284 5.92920 5.94824 6.07988 6.20978 6.35845 6.60260 6.83104 6.98271 7.01742 7.09824 7.21437 7.23283 7.44280 7.65060 7.79164 7.90653 8.04433 8.08804 8.16578 8.45411 8.64294 8.90096 8.94267 10.19692 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.002163 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.148752 B =12942.410706 C =14257.633209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.120 4.120 4 H 0.082 0.918 5 C -0.161 4.161 6 C 0.098 3.902 7 H 0.108 0.892 8 O -0.552 6.552 9 C 0.084 3.916 10 N -0.698 5.698 11 C 0.512 3.488 12 O -0.527 6.527 13 C 0.496 3.504 14 O -0.497 6.497 15 N -0.633 5.633 16 C 0.144 3.856 17 C -0.255 4.255 18 C -0.091 4.091 19 C -0.168 4.168 20 C 0.119 3.881 21 C -0.457 4.457 22 H 0.079 0.921 23 C 0.075 3.925 24 N -0.794 5.794 25 Si 0.910 3.090 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.265 1.265 29 C -0.208 4.208 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.375 0.625 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.418 0.582 42 H 0.410 0.590 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.281 0.719 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.339 -5.028 -0.225 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.140 4.140 4 H 0.101 0.899 5 C -0.218 4.218 6 C 0.039 3.961 7 H 0.126 0.874 8 O -0.358 6.358 9 C -0.040 4.040 10 N -0.352 5.352 11 C 0.292 3.708 12 O -0.403 6.403 13 C 0.276 3.724 14 O -0.371 6.371 15 N -0.278 5.278 16 C 0.053 3.947 17 C -0.277 4.277 18 C -0.110 4.110 19 C -0.187 4.187 20 C 0.116 3.884 21 C -0.487 4.487 22 H 0.097 0.903 23 C -0.142 4.142 24 N -0.420 5.420 25 Si 0.734 3.266 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.190 1.190 29 C -0.230 4.230 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.224 0.776 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.255 0.745 42 H 0.246 0.754 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.927 -5.279 -0.607 22.561 hybrid contribution 0.212 -0.019 0.583 0.620 sum -21.715 -5.298 -0.024 22.352 Atomic orbital electron populations 1.21837 0.95872 1.01662 1.01821 1.21472 0.95567 0.95332 1.02829 1.21789 0.94877 0.97698 0.99603 0.89923 1.22002 1.02375 1.00578 0.96812 1.22242 0.92012 0.90449 0.91420 0.87374 1.86631 1.76043 1.56377 1.16797 1.22273 0.80501 0.98213 1.02980 1.45644 1.08718 1.09527 1.71355 1.20338 0.88496 0.84215 0.77705 1.90734 1.69833 1.31460 1.48243 1.19930 0.87403 0.85179 0.79853 1.90825 1.68991 1.31109 1.46211 1.43130 1.06947 1.08313 1.69452 1.17450 0.79032 0.98651 0.99600 1.20066 0.94738 1.02514 1.10341 1.20472 0.92746 0.98201 0.99631 1.21382 0.99835 0.96903 1.00615 1.17478 0.90220 0.91864 0.88822 1.19548 0.95074 0.99271 1.34806 0.90306 1.25912 0.98803 0.96506 0.93003 1.69812 1.17254 1.20501 1.34385 0.86340 0.78665 0.81672 0.79890 1.18774 1.20368 1.18986 1.20971 0.94031 1.01248 1.06718 0.92523 0.92842 0.92758 0.91860 0.91201 0.92298 0.92008 0.91687 0.77628 0.90421 0.90142 0.74483 0.75402 0.88993 0.88812 0.86182 0.90812 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.11 -0.65 5.19 -26.73 -0.14 -0.79 16 3 C -0.12 -0.65 2.28 -90.62 -0.21 -0.86 16 4 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 5 C -0.16 -0.78 8.29 37.15 0.31 -0.48 16 6 C 0.10 0.68 2.80 -26.73 -0.07 0.61 16 7 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 8 O -0.55 -4.51 12.66 -35.23 -0.45 -4.96 16 9 C 0.08 0.73 4.81 -4.04 -0.02 0.71 16 10 N -0.70 -8.33 5.50 -60.76 -0.33 -8.66 16 11 C 0.51 7.80 7.89 -11.63 -0.09 7.71 16 12 O -0.53 -8.64 16.48 5.49 0.09 -8.55 16 13 C 0.50 9.17 7.61 -11.63 -0.09 9.08 16 14 O -0.50 -10.54 14.23 5.47 0.08 -10.46 16 15 N -0.63 -12.08 5.32 -10.34 -0.06 -12.14 16 16 C 0.14 3.30 6.25 -83.82 -0.52 2.78 16 17 C -0.26 -5.66 9.97 -39.09 -0.39 -6.05 16 18 C -0.09 -2.12 10.01 -39.70 -0.40 -2.52 16 19 C -0.17 -4.37 8.69 -38.83 -0.34 -4.70 16 20 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 21 C -0.46 -12.41 9.05 -37.74 -0.34 -12.76 16 22 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 23 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 24 N -0.79 -20.52 10.94 55.55 0.61 -19.92 16 25 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 C -0.21 -5.36 8.39 -38.66 -0.32 -5.69 16 30 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 35 H 0.06 0.26 6.78 -51.93 -0.35 -0.09 16 36 H 0.06 0.32 6.54 -51.93 -0.34 -0.02 16 37 H 0.06 0.30 6.57 -51.92 -0.34 -0.04 16 38 H 0.38 2.17 7.33 45.56 0.33 2.50 16 39 H 0.08 0.67 6.71 -51.93 -0.35 0.32 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.42 4.99 7.94 -40.82 -0.32 4.66 16 42 H 0.41 6.76 8.30 -40.82 -0.34 6.42 16 43 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.12 3.20 6.17 -52.49 -0.32 2.87 16 46 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 47 H 0.11 2.77 6.48 -52.49 -0.34 2.43 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -30.85 386.03 -8.28 -39.12 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -6.05 Total: 14.74 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.95 Total: -8.90 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.22 Total: -40.72 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.28 Total: -23.97 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.85 -8.28 -39.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453657039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.292 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds