Wall clock time and date at job start Tue Mar 31 2020 17:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 H 1.09000 * 109.46958 * 305.00047 * 3 2 1 5 5 C 1.52991 * 109.47181 * 65.00111 * 3 2 1 6 6 C 1.52999 * 109.46761 * 184.99925 * 3 2 1 7 7 H 1.09000 * 109.47069 * 60.00657 * 6 3 2 8 8 O 1.42894 * 109.47404 * 299.99778 * 6 3 2 9 9 C 1.53001 * 109.46761 * 180.02562 * 6 3 2 10 10 N 1.46503 * 109.47377 * 185.00218 * 9 6 3 11 11 C 1.34776 * 120.00043 * 180.27421 * 10 9 6 12 12 O 1.21358 * 120.00315 * 359.72311 * 11 10 9 13 13 C 1.49356 * 119.99862 * 179.72500 * 11 10 9 14 14 O 1.21378 * 119.99899 * 0.02562 * 13 11 10 15 15 N 1.34772 * 120.00330 * 180.02562 * 13 11 10 16 16 C 1.39742 * 120.00459 * 174.89098 * 15 13 11 17 17 C 1.39342 * 119.95712 * 145.76124 * 16 15 13 18 18 C 1.38462 * 120.42559 * 179.97438 * 17 16 15 19 19 C 1.37697 * 120.32974 * 359.97438 * 18 17 16 20 20 C 1.40746 * 119.89512 * 0.02562 * 19 18 17 21 21 C 1.41411 * 120.20855 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00136 * 205.17924 * 21 20 19 23 23 C 1.39932 * 119.99687 * 25.18933 * 21 20 19 24 24 N 1.30830 * 120.00104 * 16.78378 * 23 21 20 25 25 Si 1.86796 * 119.99825 * 196.78907 * 23 21 20 26 26 H 1.48504 * 109.47394 * 59.99602 * 25 23 21 27 27 H 1.48501 * 109.47196 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47367 * 299.99441 * 25 23 21 29 29 C 1.38302 * 119.94873 * 325.48383 * 16 15 13 30 30 H 1.08998 * 109.47227 * 299.99786 * 1 2 3 31 31 H 1.08997 * 109.47348 * 59.99957 * 1 2 3 32 32 H 1.08999 * 109.47542 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46958 * 239.99578 * 2 1 3 34 34 H 1.08999 * 109.46878 * 120.00272 * 2 1 3 35 35 H 1.09001 * 109.47265 * 59.99550 * 5 3 2 36 36 H 1.08996 * 109.47657 * 180.02562 * 5 3 2 37 37 H 1.09008 * 109.47326 * 300.00088 * 5 3 2 38 38 H 0.96698 * 114.00368 * 300.00305 * 8 6 3 39 39 H 1.09002 * 109.47251 * 64.99767 * 9 6 3 40 40 H 1.09006 * 109.47332 * 304.99816 * 9 6 3 41 41 H 0.96996 * 119.99355 * 0.02562 * 10 9 6 42 42 H 0.97002 * 119.99448 * 354.88349 * 15 13 11 43 43 H 1.08007 * 119.78187 * 359.95471 * 17 16 15 44 44 H 1.08002 * 119.83437 * 179.97438 * 18 17 16 45 45 H 1.07995 * 120.05262 * 179.97438 * 19 18 17 46 46 H 0.96996 * 120.00012 * 180.02562 * 24 23 21 47 47 H 1.07993 * 120.16807 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 3.8531 0.9569 -1.0571 8 8 4.1346 0.7375 0.9779 9 6 4.0749 2.8866 -0.1251 10 7 5.5202 2.8937 -0.3649 11 6 6.1915 4.0618 -0.4017 12 8 5.5980 5.1081 -0.2411 13 6 7.6658 4.0686 -0.6401 14 8 8.2594 3.0222 -0.8013 15 7 8.3373 5.2366 -0.6764 16 6 9.7299 5.2387 -0.7925 17 6 10.3667 6.2492 -1.5102 18 6 11.7460 6.2611 -1.6310 19 6 12.5041 5.2739 -1.0421 20 6 11.8751 4.2467 -0.3140 21 6 12.6471 3.2292 0.2930 22 1 12.2081 2.2621 0.4885 23 6 13.9800 3.4757 0.6406 24 7 14.4197 4.7056 0.7163 25 14 15.1316 2.0486 0.9965 26 1 15.2286 1.1795 -0.2038 27 1 16.4785 2.5726 1.3378 28 1 14.6034 1.2590 2.1379 29 6 10.4745 4.2411 -0.1899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.0699 1.5874 2.1491 36 1 1.9982 3.1543 1.3072 37 1 0.5489 2.1252 1.3969 38 1 3.9190 1.1164 1.8411 39 1 3.8646 3.3460 0.8408 40 1 3.5733 3.4498 -0.9121 41 1 5.9944 2.0575 -0.4937 42 1 7.8538 6.0758 -0.6220 43 1 9.7805 7.0279 -1.9755 44 1 12.2297 7.0486 -2.1898 45 1 13.5796 5.2873 -1.1395 46 1 15.3437 4.8764 0.9569 47 1 9.9825 3.4597 0.3700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453657039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:06 Heat of formation + Delta-G solvation = -138.385750 kcal Electronic energy + Delta-G solvation = -27876.963730 eV Core-core repulsion = 23829.935050 eV Total energy + Delta-G solvation = -4047.028680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00908 -40.46826 -39.55977 -38.84741 -36.57876 -35.83686 -35.38114 -34.77426 -31.79513 -31.45079 -30.33224 -29.06806 -27.30973 -26.80579 -25.34082 -23.20984 -22.84281 -22.50408 -21.39707 -20.73898 -19.95129 -19.27700 -18.06434 -17.63309 -17.44317 -17.30260 -16.71341 -16.65343 -16.46531 -16.29256 -15.77639 -15.36202 -15.25701 -15.08927 -14.75545 -14.67662 -14.43828 -14.02517 -13.70153 -13.57090 -13.32474 -13.07666 -13.04295 -12.92729 -12.87672 -12.69193 -12.56573 -12.39270 -12.20072 -12.05267 -11.91499 -11.55806 -11.53432 -11.38206 -11.20809 -10.96877 -10.90175 -10.57635 -10.39002 -9.43440 -8.85035 -8.63472 -6.38153 0.11409 0.94476 1.02861 1.28252 1.37717 1.48729 1.53326 2.09531 2.21099 2.57734 2.72122 3.31135 3.42326 3.54889 3.70285 3.85061 3.93176 4.12280 4.25022 4.43225 4.51678 4.53951 4.58348 4.60291 4.69178 4.80397 4.89614 4.94451 5.03348 5.05628 5.07457 5.09467 5.11534 5.17359 5.18648 5.25325 5.28553 5.50773 5.54452 5.58601 5.76525 5.93946 6.03877 6.07323 6.27216 6.35454 6.62317 6.68659 6.74809 6.87666 6.95063 7.00540 8.32230 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.002163 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.148752 B =12942.410706 C =14257.633209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.113 4.113 4 H 0.091 0.909 5 C -0.161 4.161 6 C 0.105 3.895 7 H 0.107 0.893 8 O -0.568 6.568 9 C 0.082 3.918 10 N -0.683 5.683 11 C 0.521 3.479 12 O -0.536 6.536 13 C 0.493 3.507 14 O -0.528 6.528 15 N -0.629 5.629 16 C 0.149 3.851 17 C -0.247 4.247 18 C -0.089 4.089 19 C -0.192 4.192 20 C 0.089 3.911 21 C -0.499 4.499 22 H 0.067 0.933 23 C 0.037 3.963 24 N -0.820 5.820 25 Si 0.982 3.018 26 H -0.262 1.262 27 H -0.262 1.262 28 H -0.262 1.262 29 C -0.233 4.233 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.385 0.615 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.419 0.581 42 H 0.425 0.575 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.290 0.710 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.764 -4.616 -0.516 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.132 4.132 4 H 0.109 0.891 5 C -0.218 4.218 6 C 0.046 3.954 7 H 0.125 0.875 8 O -0.376 6.376 9 C -0.040 4.040 10 N -0.336 5.336 11 C 0.301 3.699 12 O -0.414 6.414 13 C 0.275 3.725 14 O -0.404 6.404 15 N -0.275 5.275 16 C 0.057 3.943 17 C -0.268 4.268 18 C -0.108 4.108 19 C -0.212 4.212 20 C 0.086 3.914 21 C -0.528 4.528 22 H 0.085 0.915 23 C -0.178 4.178 24 N -0.446 5.446 25 Si 0.803 3.197 26 H -0.186 1.186 27 H -0.186 1.186 28 H -0.187 1.187 29 C -0.254 4.254 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.256 0.744 42 H 0.263 0.737 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.409 -4.856 -0.892 23.924 hybrid contribution 0.504 -0.109 0.644 0.825 sum -22.905 -4.964 -0.248 23.438 Atomic orbital electron populations 1.21824 0.95218 1.01809 1.02184 1.21446 0.96102 0.95314 1.02220 1.21726 0.93441 0.97718 1.00316 0.89120 1.22008 1.02793 1.00406 0.96561 1.22225 0.92965 0.89079 0.91161 0.87478 1.86614 1.76453 1.56879 1.17651 1.22552 0.78157 0.99709 1.03624 1.45705 1.10053 1.08386 1.69415 1.19639 0.86711 0.85083 0.78474 1.90738 1.69355 1.31870 1.49453 1.20599 0.89010 0.84360 0.78482 1.90814 1.70157 1.32155 1.47242 1.43043 1.05556 1.09460 1.69476 1.17525 0.80797 0.97693 0.98331 1.20486 0.94706 1.02647 1.08949 1.20836 0.93332 0.97886 0.98708 1.21361 0.99535 0.98121 1.02176 1.17825 0.91157 0.92746 0.89636 1.19726 0.96822 0.99183 1.37090 0.91464 1.26715 0.99577 0.99290 0.92212 1.69845 1.18077 1.22181 1.34506 0.85260 0.76842 0.78025 0.79615 1.18606 1.18603 1.18672 1.20939 0.93967 1.02270 1.08239 0.92102 0.92509 0.92780 0.92345 0.91979 0.91934 0.92123 0.91138 0.76515 0.89759 0.89180 0.74406 0.73678 0.85130 0.85617 0.87498 0.89913 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 71.98 0.70 -0.60 16 2 C -0.11 -1.14 5.19 30.59 0.16 -0.98 16 3 C -0.11 -1.01 2.28 -10.80 -0.02 -1.04 16 4 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 5 C -0.16 -1.25 8.29 71.98 0.60 -0.65 16 6 C 0.11 1.30 2.80 30.59 0.09 1.39 16 7 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 8 O -0.57 -8.62 12.66 -148.98 -1.89 -10.51 16 9 C 0.08 1.27 4.81 86.38 0.42 1.69 16 10 N -0.68 -15.45 5.50 -464.49 -2.55 -18.01 16 11 C 0.52 15.29 7.89 87.24 0.69 15.98 16 12 O -0.54 -16.63 16.48 -3.27 -0.05 -16.68 16 13 C 0.49 18.13 7.61 87.24 0.66 18.79 16 14 O -0.53 -22.82 14.23 -3.33 -0.05 -22.87 16 15 N -0.63 -23.46 5.32 -304.98 -1.62 -25.09 16 16 C 0.15 6.80 6.25 38.16 0.24 7.04 16 17 C -0.25 -10.49 9.97 22.59 0.23 -10.27 16 18 C -0.09 -4.03 10.01 22.20 0.22 -3.81 16 19 C -0.19 -10.22 8.69 22.76 0.20 -10.02 16 20 C 0.09 5.07 5.57 -21.31 -0.12 4.95 16 21 C -0.50 -28.37 9.05 23.46 0.21 -28.16 16 22 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 23 C 0.04 1.93 5.16 85.25 0.44 2.37 16 24 N -0.82 -43.27 10.94 21.82 0.24 -43.03 16 25 Si 0.98 39.40 29.59 68.60 2.03 41.43 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 27 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 28 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 29 C -0.23 -12.40 8.39 22.86 0.19 -12.21 16 30 H 0.06 0.46 6.57 -2.39 -0.02 0.45 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 0.73 7.84 -2.39 -0.02 0.71 16 35 H 0.06 0.44 6.78 -2.39 -0.02 0.43 16 36 H 0.06 0.50 6.54 -2.39 -0.02 0.48 16 37 H 0.07 0.49 6.57 -2.38 -0.02 0.48 16 38 H 0.38 3.95 7.33 -74.06 -0.54 3.41 16 39 H 0.08 1.27 6.71 -2.39 -0.02 1.25 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.42 9.68 7.94 -92.71 -0.74 8.95 16 42 H 0.42 13.25 8.30 -92.71 -0.77 12.48 16 43 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 45 H 0.11 5.87 6.17 -2.91 -0.02 5.85 16 46 H 0.29 13.74 8.30 -92.71 -0.77 12.98 16 47 H 0.09 4.95 6.48 -2.91 -0.02 4.93 16 Total: -1.00 -68.22 386.03 -0.02 -68.24 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -1.02 Total: 42.04 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 4.89 Total: -15.53 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.94 Total: -86.13 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.99 Total: -50.06 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -68.22 -0.02 -68.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453657039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.141 kcal (2) G-P(sol) polarization free energy of solvation -68.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds