Wall clock time and date at job start Tue Mar 31 2020 17:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 H 1.09003 * 109.47342 * 54.99760 * 3 2 1 5 5 C 1.53001 * 109.47156 * 295.00267 * 3 2 1 6 6 C 1.52999 * 109.47343 * 174.99893 * 3 2 1 7 7 H 1.08997 * 109.47448 * 305.00116 * 6 3 2 8 8 O 1.42902 * 109.46963 * 65.00387 * 6 3 2 9 9 C 1.53001 * 109.47071 * 184.99651 * 6 3 2 10 10 N 1.46501 * 109.46941 * 180.02562 * 9 6 3 11 11 C 1.34779 * 119.99893 * 180.02562 * 10 9 6 12 12 O 1.21367 * 120.00213 * 0.02562 * 11 10 9 13 13 C 1.49351 * 120.00005 * 179.97438 * 11 10 9 14 14 O 1.21371 * 120.00200 * 0.02562 * 13 11 10 15 15 N 1.34779 * 120.00005 * 179.97438 * 13 11 10 16 16 C 1.39748 * 119.99837 * 174.89351 * 15 13 11 17 17 C 1.39346 * 119.94757 * 145.77150 * 16 15 13 18 18 C 1.38471 * 120.41872 * 179.97438 * 17 16 15 19 19 C 1.37698 * 120.32739 * 359.97438 * 18 17 16 20 20 C 1.40737 * 119.89913 * 0.02562 * 19 18 17 21 21 C 1.41410 * 120.21173 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00409 * 205.18465 * 21 20 19 23 23 C 1.39933 * 119.99868 * 25.17868 * 21 20 19 24 24 N 1.30834 * 119.99816 * 16.79174 * 23 21 20 25 25 Si 1.86796 * 120.00322 * 196.79589 * 23 21 20 26 26 H 1.48505 * 109.47164 * 94.96066 * 25 23 21 27 27 H 1.48500 * 109.47247 * 214.96383 * 25 23 21 28 28 H 1.48507 * 109.46944 * 334.96606 * 25 23 21 29 29 C 1.38301 * 119.95072 * 325.48959 * 16 15 13 30 30 H 1.09003 * 109.46962 * 299.99801 * 1 2 3 31 31 H 1.08995 * 109.47099 * 60.00066 * 1 2 3 32 32 H 1.09005 * 109.46834 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47647 * 240.00256 * 2 1 3 34 34 H 1.08997 * 109.47615 * 119.99920 * 2 1 3 35 35 H 1.09003 * 109.47054 * 59.99227 * 5 3 2 36 36 H 1.09001 * 109.47063 * 299.99751 * 5 3 2 37 37 H 1.08997 * 109.47346 * 179.97438 * 5 3 2 38 38 H 0.96698 * 114.00305 * 59.99736 * 8 6 3 39 39 H 1.08997 * 109.47364 * 300.00516 * 9 6 3 40 40 H 1.09004 * 109.47263 * 60.00514 * 9 6 3 41 41 H 0.96995 * 120.00500 * 0.02562 * 10 9 6 42 42 H 0.96999 * 120.00104 * 354.90057 * 15 13 11 43 43 H 1.08000 * 119.79192 * 359.94787 * 17 16 15 44 44 H 1.07996 * 119.83412 * 179.97438 * 18 17 16 45 45 H 1.08005 * 120.04988 * 179.97438 * 19 18 17 46 46 H 0.97000 * 119.99606 * 179.97438 * 24 23 21 47 47 H 1.07995 * 120.16650 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.8571 0.8801 1.0113 8 8 4.1392 0.8404 -1.0350 9 6 4.0644 2.8851 0.2511 10 7 5.5245 2.8868 0.3708 11 6 6.1891 4.0529 0.4941 12 8 5.5780 5.1014 0.5064 13 6 7.6776 4.0547 0.6168 14 8 8.2888 3.0062 0.6051 15 7 8.3422 5.2208 0.7396 16 6 9.7220 5.2186 0.9614 17 6 10.5160 6.2248 0.4148 18 6 11.8841 6.2324 0.6288 19 6 12.4750 5.2451 1.3851 20 6 11.6860 4.2223 1.9436 21 6 12.2859 3.2054 2.7219 22 1 11.8096 2.2400 2.8088 23 6 13.4967 3.4499 3.3793 24 7 13.9092 4.6790 3.5546 25 14 14.5242 2.0215 4.0063 26 1 15.5521 1.6692 2.9941 27 1 15.1914 2.4108 5.2746 28 1 13.6459 0.8488 4.2486 29 6 10.2965 4.2210 1.7278 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5488 2.1252 -1.3969 36 1 2.0698 1.5876 -2.1492 37 1 1.9981 3.1544 -1.3072 38 1 3.9205 1.2912 -1.8621 39 1 3.7722 3.4493 -0.6345 40 1 3.6264 3.3459 1.1365 41 1 6.0130 2.0489 0.3614 42 1 7.8629 6.0615 0.6741 43 1 10.0616 7.0035 -0.1799 44 1 12.4905 7.0166 0.2003 45 1 13.5425 5.2552 1.5488 46 1 14.7484 4.8485 4.0107 47 1 9.6815 3.4434 2.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453657040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:10 Heat of formation + Delta-G solvation = -116.403644 kcal Electronic energy + Delta-G solvation = -27864.513061 eV Core-core repulsion = 23818.437597 eV Total energy + Delta-G solvation = -4046.075464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64578 -39.43860 -38.45743 -37.11871 -35.36037 -34.87336 -34.20853 -33.02025 -30.81015 -29.86915 -28.81208 -28.25215 -26.07965 -25.34852 -24.16754 -22.29468 -21.28171 -20.90065 -20.41029 -19.69198 -18.49370 -17.65388 -17.10452 -16.51575 -16.44755 -15.74843 -15.58059 -15.35081 -14.98548 -14.91970 -14.63578 -14.57030 -14.16474 -13.92672 -13.67353 -13.17630 -12.99024 -12.89891 -12.64312 -12.50352 -12.21048 -12.12917 -11.92728 -11.73862 -11.58820 -11.44445 -11.25969 -11.15453 -11.08793 -10.93487 -10.90879 -10.47671 -10.34061 -10.10203 -9.69121 -9.45085 -9.38132 -9.11153 -9.01684 -7.49586 -6.99908 -6.74370 -4.36619 1.52487 2.45446 2.75472 2.92327 3.09025 3.13983 3.19692 3.56117 3.76371 3.95111 4.03728 4.13136 4.34393 4.41226 4.61903 4.63914 4.72514 4.78415 4.96043 5.01293 5.09502 5.18301 5.32911 5.46201 5.51026 5.56935 5.59194 5.65618 5.67015 5.92348 5.94328 6.07840 6.20873 6.35611 6.60182 6.83131 6.97978 7.01513 7.10064 7.20255 7.22982 7.44335 7.64872 7.79426 7.90460 8.04521 8.08674 8.16448 8.45363 8.64325 8.89971 8.94053 10.19441 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002140 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.661211 B =13081.108032 C =14344.534395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.120 4.120 4 H 0.083 0.917 5 C -0.161 4.161 6 C 0.098 3.902 7 H 0.109 0.891 8 O -0.553 6.553 9 C 0.084 3.916 10 N -0.698 5.698 11 C 0.511 3.489 12 O -0.527 6.527 13 C 0.496 3.504 14 O -0.497 6.497 15 N -0.634 5.634 16 C 0.144 3.856 17 C -0.255 4.255 18 C -0.091 4.091 19 C -0.167 4.167 20 C 0.119 3.881 21 C -0.457 4.457 22 H 0.079 0.921 23 C 0.075 3.925 24 N -0.794 5.794 25 Si 0.910 3.090 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.261 1.261 29 C -0.208 4.208 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.375 0.625 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.419 0.581 42 H 0.410 0.590 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.280 0.720 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.546 -4.955 -6.570 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.140 4.140 4 H 0.101 0.899 5 C -0.218 4.218 6 C 0.039 3.961 7 H 0.127 0.873 8 O -0.359 6.359 9 C -0.040 4.040 10 N -0.352 5.352 11 C 0.292 3.708 12 O -0.403 6.403 13 C 0.276 3.724 14 O -0.371 6.371 15 N -0.279 5.279 16 C 0.053 3.947 17 C -0.276 4.276 18 C -0.111 4.111 19 C -0.187 4.187 20 C 0.116 3.884 21 C -0.487 4.487 22 H 0.097 0.903 23 C -0.143 4.143 24 N -0.420 5.420 25 Si 0.734 3.266 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.185 1.185 29 C -0.229 4.229 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.224 0.776 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.256 0.744 42 H 0.246 0.754 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.162 -5.251 -5.995 22.613 hybrid contribution 0.151 0.022 -0.023 0.155 sum -21.011 -5.229 -6.017 22.472 Atomic orbital electron populations 1.21838 0.95848 1.01670 1.01831 1.21487 0.95634 0.95349 1.02786 1.21782 0.94897 0.97688 0.99601 0.89903 1.21994 1.02405 1.00484 0.96877 1.22256 0.92022 0.91844 0.90011 0.87325 1.86628 1.75639 1.56959 1.16673 1.22256 0.80131 0.98221 1.03431 1.45623 1.07464 1.09590 1.72535 1.20342 0.88807 0.84233 0.77390 1.90737 1.69597 1.31244 1.48710 1.19926 0.87616 0.85196 0.79622 1.90824 1.68536 1.30899 1.46842 1.43133 1.08134 1.08325 1.68268 1.17452 0.79621 0.98675 0.98981 1.20070 0.94048 1.02598 1.10905 1.20475 0.93334 0.98207 0.99036 1.21383 1.00128 0.96929 1.00271 1.17484 0.89803 0.91863 0.89272 1.19594 1.04198 0.99416 1.25457 0.90254 1.25917 0.97419 0.96507 0.94416 1.69828 1.20049 1.20504 1.31575 0.86272 0.80003 0.81827 0.78471 1.19316 1.20318 1.18525 1.20968 0.95133 1.01268 1.05567 0.92812 0.92530 0.92753 0.91228 0.91844 0.91650 0.92207 0.92086 0.77644 0.90485 0.90102 0.74406 0.75402 0.88983 0.88806 0.86180 0.90887 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.66 5.25 -26.73 -0.14 -0.80 16 3 C -0.12 -0.65 2.22 -90.62 -0.20 -0.85 16 4 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 5 C -0.16 -0.77 8.28 37.16 0.31 -0.46 16 6 C 0.10 0.68 2.80 -26.73 -0.07 0.61 16 7 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 8 O -0.55 -4.43 12.61 -35.23 -0.44 -4.87 16 9 C 0.08 0.73 5.09 -4.04 -0.02 0.71 16 10 N -0.70 -8.33 5.44 -60.76 -0.33 -8.66 16 11 C 0.51 7.80 7.89 -11.63 -0.09 7.71 16 12 O -0.53 -8.64 16.48 5.48 0.09 -8.55 16 13 C 0.50 9.17 7.61 -11.63 -0.09 9.08 16 14 O -0.50 -10.54 14.23 5.48 0.08 -10.46 16 15 N -0.63 -12.08 5.32 -10.34 -0.06 -12.13 16 16 C 0.14 3.30 6.25 -83.81 -0.52 2.78 16 17 C -0.25 -5.65 9.97 -39.08 -0.39 -6.04 16 18 C -0.09 -2.13 10.02 -39.69 -0.40 -2.52 16 19 C -0.17 -4.36 8.69 -38.84 -0.34 -4.70 16 20 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 21 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 22 H 0.08 2.11 7.90 -52.49 -0.41 1.70 16 23 C 0.07 1.90 5.16 -17.34 -0.09 1.81 16 24 N -0.79 -20.52 10.94 55.55 0.61 -19.91 16 25 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 27 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 28 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 29 C -0.21 -5.35 8.39 -38.66 -0.32 -5.67 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.27 6.56 -51.93 -0.34 -0.08 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.44 7.96 -51.93 -0.41 0.03 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 36 H 0.06 0.26 6.72 -51.93 -0.35 -0.09 16 37 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 38 H 0.38 2.10 7.19 45.56 0.33 2.43 16 39 H 0.08 0.65 6.57 -51.93 -0.34 0.30 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.42 5.03 7.82 -40.82 -0.32 4.71 16 42 H 0.41 6.76 8.30 -40.82 -0.34 6.42 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.12 3.20 6.17 -52.48 -0.32 2.87 16 46 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 47 H 0.11 2.76 6.49 -52.49 -0.34 2.42 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -30.82 385.88 -8.27 -39.09 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.05 Total: 14.66 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.95 Total: -8.86 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.22 Total: -40.71 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.28 Total: -23.88 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.82 -8.27 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453657040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.315 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds