Wall clock time and date at job start Tue Mar 31 2020 17:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 H 1.09003 * 109.47342 * 54.99760 * 3 2 1 5 5 C 1.53001 * 109.47156 * 295.00267 * 3 2 1 6 6 C 1.52999 * 109.47343 * 174.99893 * 3 2 1 7 7 H 1.08997 * 109.47448 * 305.00116 * 6 3 2 8 8 O 1.42902 * 109.46963 * 65.00387 * 6 3 2 9 9 C 1.53001 * 109.47071 * 184.99651 * 6 3 2 10 10 N 1.46501 * 109.46941 * 180.02562 * 9 6 3 11 11 C 1.34779 * 119.99893 * 180.02562 * 10 9 6 12 12 O 1.21367 * 120.00213 * 0.02562 * 11 10 9 13 13 C 1.49351 * 120.00005 * 179.97438 * 11 10 9 14 14 O 1.21371 * 120.00200 * 0.02562 * 13 11 10 15 15 N 1.34779 * 120.00005 * 179.97438 * 13 11 10 16 16 C 1.39748 * 119.99837 * 174.89351 * 15 13 11 17 17 C 1.39346 * 119.94757 * 145.77150 * 16 15 13 18 18 C 1.38471 * 120.41872 * 179.97438 * 17 16 15 19 19 C 1.37698 * 120.32739 * 359.97438 * 18 17 16 20 20 C 1.40737 * 119.89913 * 0.02562 * 19 18 17 21 21 C 1.41410 * 120.21173 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00409 * 205.18465 * 21 20 19 23 23 C 1.39933 * 119.99868 * 25.17868 * 21 20 19 24 24 N 1.30834 * 119.99816 * 16.79174 * 23 21 20 25 25 Si 1.86796 * 120.00322 * 196.79589 * 23 21 20 26 26 H 1.48505 * 109.47164 * 94.96066 * 25 23 21 27 27 H 1.48500 * 109.47247 * 214.96383 * 25 23 21 28 28 H 1.48507 * 109.46944 * 334.96606 * 25 23 21 29 29 C 1.38301 * 119.95072 * 325.48959 * 16 15 13 30 30 H 1.09003 * 109.46962 * 299.99801 * 1 2 3 31 31 H 1.08995 * 109.47099 * 60.00066 * 1 2 3 32 32 H 1.09005 * 109.46834 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47647 * 240.00256 * 2 1 3 34 34 H 1.08997 * 109.47615 * 119.99920 * 2 1 3 35 35 H 1.09003 * 109.47054 * 59.99227 * 5 3 2 36 36 H 1.09001 * 109.47063 * 299.99751 * 5 3 2 37 37 H 1.08997 * 109.47346 * 179.97438 * 5 3 2 38 38 H 0.96698 * 114.00305 * 59.99736 * 8 6 3 39 39 H 1.08997 * 109.47364 * 300.00516 * 9 6 3 40 40 H 1.09004 * 109.47263 * 60.00514 * 9 6 3 41 41 H 0.96995 * 120.00500 * 0.02562 * 10 9 6 42 42 H 0.96999 * 120.00104 * 354.90057 * 15 13 11 43 43 H 1.08000 * 119.79192 * 359.94787 * 17 16 15 44 44 H 1.07996 * 119.83412 * 179.97438 * 18 17 16 45 45 H 1.08005 * 120.04988 * 179.97438 * 19 18 17 46 46 H 0.97000 * 119.99606 * 179.97438 * 24 23 21 47 47 H 1.07995 * 120.16650 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.8571 0.8801 1.0113 8 8 4.1392 0.8404 -1.0350 9 6 4.0644 2.8851 0.2511 10 7 5.5245 2.8868 0.3708 11 6 6.1891 4.0529 0.4941 12 8 5.5780 5.1014 0.5064 13 6 7.6776 4.0547 0.6168 14 8 8.2888 3.0062 0.6051 15 7 8.3422 5.2208 0.7396 16 6 9.7220 5.2186 0.9614 17 6 10.5160 6.2248 0.4148 18 6 11.8841 6.2324 0.6288 19 6 12.4750 5.2451 1.3851 20 6 11.6860 4.2223 1.9436 21 6 12.2859 3.2054 2.7219 22 1 11.8096 2.2400 2.8088 23 6 13.4967 3.4499 3.3793 24 7 13.9092 4.6790 3.5546 25 14 14.5242 2.0215 4.0063 26 1 15.5521 1.6692 2.9941 27 1 15.1914 2.4108 5.2746 28 1 13.6459 0.8488 4.2486 29 6 10.2965 4.2210 1.7278 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5488 2.1252 -1.3969 36 1 2.0698 1.5876 -2.1492 37 1 1.9981 3.1544 -1.3072 38 1 3.9205 1.2912 -1.8621 39 1 3.7722 3.4493 -0.6345 40 1 3.6264 3.3459 1.1365 41 1 6.0130 2.0489 0.3614 42 1 7.8629 6.0615 0.6741 43 1 10.0616 7.0035 -0.1799 44 1 12.4905 7.0166 0.2003 45 1 13.5425 5.2552 1.5488 46 1 14.7484 4.8485 4.0107 47 1 9.6815 3.4434 2.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453657040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:09 Heat of formation + Delta-G solvation = -138.270393 kcal Electronic energy + Delta-G solvation = -27865.461275 eV Core-core repulsion = 23818.437597 eV Total energy + Delta-G solvation = -4047.023677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.00887 -40.46926 -39.55840 -38.84841 -36.57828 -35.84978 -35.36612 -34.77087 -31.79622 -31.41541 -30.33314 -29.13494 -27.31291 -26.80452 -25.32197 -23.20400 -22.83693 -22.49600 -21.40226 -20.74239 -19.95426 -19.27900 -18.05280 -17.63566 -17.49827 -17.22732 -16.81039 -16.62285 -16.46430 -16.28830 -15.74397 -15.39142 -15.33679 -14.99005 -14.80523 -14.66976 -14.43169 -14.03255 -13.70489 -13.57143 -13.27136 -13.08236 -13.03391 -12.93737 -12.88316 -12.70098 -12.56936 -12.38445 -12.19308 -12.07724 -11.91435 -11.54689 -11.52816 -11.39423 -11.21179 -10.97370 -10.90367 -10.57930 -10.38627 -9.43570 -8.85071 -8.63750 -6.38397 0.11352 0.93640 1.03083 1.27745 1.37726 1.50867 1.51416 2.09505 2.21088 2.57532 2.71682 3.31035 3.43539 3.54135 3.70109 3.84743 3.93179 4.11282 4.25377 4.43144 4.51206 4.54268 4.58247 4.60305 4.68681 4.81081 4.89579 4.94988 5.03249 5.05461 5.07418 5.09315 5.11506 5.17193 5.18440 5.24791 5.28579 5.50341 5.54223 5.58533 5.76412 5.94108 6.03742 6.07403 6.27054 6.35548 6.62339 6.68454 6.75171 6.87619 6.95049 7.00434 8.32185 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002140 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.661211 B =13081.108032 C =14344.534395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.113 4.113 4 H 0.089 0.911 5 C -0.160 4.160 6 C 0.105 3.895 7 H 0.106 0.894 8 O -0.567 6.567 9 C 0.081 3.919 10 N -0.682 5.682 11 C 0.521 3.479 12 O -0.537 6.537 13 C 0.494 3.506 14 O -0.528 6.528 15 N -0.629 5.629 16 C 0.149 3.851 17 C -0.247 4.247 18 C -0.089 4.089 19 C -0.192 4.192 20 C 0.089 3.911 21 C -0.498 4.498 22 H 0.067 0.933 23 C 0.037 3.963 24 N -0.821 5.821 25 Si 0.983 3.017 26 H -0.260 1.260 27 H -0.263 1.263 28 H -0.264 1.264 29 C -0.232 4.232 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.385 0.615 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.419 0.581 42 H 0.425 0.575 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.290 0.710 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.837 -4.521 -7.278 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.133 4.133 4 H 0.107 0.893 5 C -0.217 4.217 6 C 0.046 3.954 7 H 0.123 0.877 8 O -0.375 6.375 9 C -0.041 4.041 10 N -0.335 5.335 11 C 0.301 3.699 12 O -0.414 6.414 13 C 0.276 3.724 14 O -0.403 6.403 15 N -0.275 5.275 16 C 0.057 3.943 17 C -0.268 4.268 18 C -0.108 4.108 19 C -0.212 4.212 20 C 0.086 3.914 21 C -0.527 4.527 22 H 0.085 0.915 23 C -0.178 4.178 24 N -0.446 5.446 25 Si 0.803 3.197 26 H -0.184 1.184 27 H -0.188 1.188 28 H -0.188 1.188 29 C -0.254 4.254 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.235 0.765 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.256 0.744 42 H 0.263 0.737 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.509 -4.803 -6.723 23.978 hybrid contribution 0.419 -0.075 0.120 0.442 sum -22.090 -4.878 -6.603 23.566 Atomic orbital electron populations 1.21825 0.95201 1.01820 1.02187 1.21463 0.96167 0.95339 1.02185 1.21723 0.93460 0.97715 1.00368 0.89250 1.21997 1.02812 1.00376 0.96529 1.22219 0.92988 0.90470 0.89730 0.87664 1.86613 1.76014 1.57457 1.17442 1.22535 0.77694 0.99716 1.04171 1.45680 1.08892 1.08444 1.70505 1.19642 0.86957 0.85090 0.78229 1.90741 1.69084 1.31649 1.49955 1.20594 0.89249 0.84377 0.78221 1.90814 1.69694 1.31955 1.47885 1.43046 1.06805 1.09470 1.68223 1.17527 0.81538 0.97713 0.97570 1.20491 0.93650 1.02729 1.09887 1.20838 0.94307 0.97878 0.97742 1.21360 0.99584 0.98160 1.02065 1.17829 0.90770 0.92738 0.90052 1.19755 1.06153 0.99294 1.27538 0.91505 1.26719 0.97772 0.99296 0.94042 1.69856 1.20720 1.22182 1.31888 0.85188 0.78073 0.77991 0.78412 1.18444 1.18783 1.18754 1.20940 0.94780 1.02305 1.07361 0.92562 0.92041 0.92765 0.91954 0.92365 0.91126 0.91770 0.92072 0.76469 0.89467 0.89477 0.74359 0.73676 0.85120 0.85614 0.87506 0.89936 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.61 16 2 C -0.11 -1.15 5.25 30.59 0.16 -0.99 16 3 C -0.11 -1.03 2.22 -10.79 -0.02 -1.05 16 4 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 5 C -0.16 -1.19 8.28 71.98 0.60 -0.59 16 6 C 0.11 1.31 2.80 30.59 0.09 1.40 16 7 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 8 O -0.57 -8.33 12.61 -148.98 -1.88 -10.21 16 9 C 0.08 1.26 5.09 86.38 0.44 1.70 16 10 N -0.68 -15.47 5.44 -464.50 -2.53 -18.00 16 11 C 0.52 15.29 7.89 87.24 0.69 15.98 16 12 O -0.54 -16.63 16.48 -3.30 -0.05 -16.69 16 13 C 0.49 18.13 7.61 87.24 0.66 18.80 16 14 O -0.53 -22.84 14.23 -3.31 -0.05 -22.88 16 15 N -0.63 -23.46 5.32 -304.98 -1.62 -25.08 16 16 C 0.15 6.79 6.25 38.16 0.24 7.03 16 17 C -0.25 -10.47 9.97 22.59 0.23 -10.25 16 18 C -0.09 -4.03 10.02 22.20 0.22 -3.81 16 19 C -0.19 -10.20 8.69 22.75 0.20 -10.00 16 20 C 0.09 5.05 5.57 -21.31 -0.12 4.93 16 21 C -0.50 -28.31 9.05 23.46 0.21 -28.10 16 22 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 23 C 0.04 1.91 5.16 85.25 0.44 2.35 16 24 N -0.82 -43.28 10.94 21.82 0.24 -43.04 16 25 Si 0.98 39.42 29.59 68.60 2.03 41.45 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 28 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 29 C -0.23 -12.37 8.39 22.86 0.19 -12.18 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.47 6.56 -2.39 -0.02 0.45 16 32 H 0.05 0.46 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.73 7.96 -2.39 -0.02 0.71 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.47 6.56 -2.39 -0.02 0.46 16 36 H 0.06 0.42 6.72 -2.39 -0.02 0.41 16 37 H 0.06 0.47 6.57 -2.39 -0.02 0.45 16 38 H 0.39 3.69 7.19 -74.06 -0.53 3.16 16 39 H 0.09 1.25 6.57 -2.39 -0.02 1.23 16 40 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.42 9.77 7.82 -92.71 -0.72 9.04 16 42 H 0.42 13.24 8.30 -92.71 -0.77 12.47 16 43 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 45 H 0.11 5.87 6.17 -2.91 -0.02 5.85 16 46 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 47 H 0.09 4.95 6.49 -2.91 -0.02 4.93 16 Total: -1.00 -68.17 385.88 0.06 -68.11 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -1.00 Total: 41.74 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.91 Total: -15.40 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -3.91 Total: -86.12 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.98 Total: -49.78 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -68.17 0.06 -68.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453657040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.163 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds