Wall clock time and date at job start Tue Mar 31 2020 17:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 H 1.08997 * 109.46978 * 54.99733 * 3 2 1 5 5 C 1.53001 * 109.46880 * 294.99752 * 3 2 1 6 6 C 1.52993 * 109.47150 * 174.99791 * 3 2 1 7 7 H 1.09010 * 109.47401 * 59.99476 * 6 3 2 8 8 O 1.42905 * 109.47293 * 300.00002 * 6 3 2 9 9 C 1.52999 * 109.47236 * 179.97438 * 6 3 2 10 10 N 1.46507 * 109.46947 * 184.99904 * 9 6 3 11 11 C 1.34779 * 119.99385 * 180.02562 * 10 9 6 12 12 O 1.21350 * 120.00443 * 359.97438 * 11 10 9 13 13 C 1.49353 * 119.99442 * 179.97438 * 11 10 9 14 14 O 1.21374 * 120.00388 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99986 * 179.97438 * 13 11 10 16 16 C 1.39741 * 120.00137 * 174.88735 * 15 13 11 17 17 C 1.39342 * 119.95183 * 145.76817 * 16 15 13 18 18 C 1.38467 * 120.42758 * 179.97438 * 17 16 15 19 19 C 1.37694 * 120.32625 * 359.97438 * 18 17 16 20 20 C 1.40749 * 119.89509 * 0.02562 * 19 18 17 21 21 C 1.41413 * 120.20617 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00138 * 205.17578 * 21 20 19 23 23 C 1.39933 * 120.00296 * 25.18612 * 21 20 19 24 24 N 1.30833 * 119.99718 * 16.78614 * 23 21 20 25 25 Si 1.86800 * 120.00330 * 196.79033 * 23 21 20 26 26 H 1.48500 * 109.47070 * 89.99730 * 25 23 21 27 27 H 1.48500 * 109.47040 * 209.99635 * 25 23 21 28 28 H 1.48501 * 109.46749 * 329.99756 * 25 23 21 29 29 C 1.38308 * 119.95618 * 325.49820 * 16 15 13 30 30 H 1.08992 * 109.47304 * 300.00078 * 1 2 3 31 31 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47062 * 60.00444 * 1 2 3 33 33 H 1.09009 * 109.46572 * 119.99461 * 2 1 3 34 34 H 1.08993 * 109.47104 * 239.99407 * 2 1 3 35 35 H 1.09007 * 109.47096 * 300.00280 * 5 3 2 36 36 H 1.08997 * 109.46915 * 59.99809 * 5 3 2 37 37 H 1.08996 * 109.47189 * 180.02562 * 5 3 2 38 38 H 0.96707 * 113.99299 * 300.00027 * 8 6 3 39 39 H 1.08992 * 109.47224 * 304.99753 * 9 6 3 40 40 H 1.09002 * 109.46764 * 65.00275 * 9 6 3 41 41 H 0.96994 * 120.00194 * 0.02562 * 10 9 6 42 42 H 0.96999 * 119.99870 * 354.90084 * 15 13 11 43 43 H 1.08003 * 119.78702 * 359.95784 * 17 16 15 44 44 H 1.07996 * 119.84080 * 179.97438 * 18 17 16 45 45 H 1.08006 * 120.05441 * 180.02562 * 19 18 17 46 46 H 0.97000 * 119.99746 * 180.02562 * 24 23 21 47 47 H 1.07997 * 120.15931 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.9995 0.9052 -0.7160 8 8 3.9429 0.8055 1.3469 9 6 4.0749 2.8868 0.1251 10 7 5.5399 2.8867 0.1252 11 6 6.2138 4.0540 0.1252 12 8 5.6071 5.1049 0.1247 13 6 7.7073 4.0539 0.1259 14 8 8.3142 3.0028 0.1269 15 7 8.3813 5.2211 0.1254 16 6 9.7745 5.2235 0.2338 17 6 10.5225 6.1911 -0.4338 18 6 11.9035 6.2031 -0.3328 19 6 12.5530 5.2582 0.4297 20 6 11.8108 4.2745 1.1098 21 6 12.4712 3.3007 1.8943 22 1 12.0021 2.3451 2.0763 23 6 13.7323 3.5752 2.4348 24 7 14.1598 4.8098 2.5037 25 14 14.8056 2.1790 3.0579 26 1 15.6625 1.6818 1.9516 27 1 15.6634 2.6706 4.1659 28 1 13.9440 1.0747 3.5513 29 6 10.4086 4.2689 1.0081 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1251 -1.3970 37 1 1.9990 3.1540 -1.3077 38 1 3.5906 1.2328 2.1397 39 1 3.7116 3.4003 -0.7651 40 1 3.7115 3.4010 1.0149 41 1 6.0249 2.0467 0.1252 42 1 7.8992 6.0594 0.0499 43 1 10.0220 6.9365 -1.0341 44 1 12.4739 6.9572 -0.8545 45 1 13.6303 5.2719 0.5058 46 1 15.0342 5.0001 2.8781 47 1 9.8295 3.5213 1.5298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453657042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:16 Heat of formation + Delta-G solvation = -116.886935 kcal Electronic energy + Delta-G solvation = -27838.812688 eV Core-core repulsion = 23792.716267 eV Total energy + Delta-G solvation = -4046.096421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63978 -39.34081 -38.41081 -37.11893 -35.47525 -34.97692 -34.23347 -33.02195 -31.04177 -29.86864 -28.68919 -27.96340 -25.87381 -25.34680 -24.19162 -22.33786 -21.33598 -20.95703 -20.61558 -19.72666 -18.49519 -17.63693 -17.09237 -16.60297 -16.23004 -15.73663 -15.51813 -15.25099 -15.03806 -14.88064 -14.61396 -14.48417 -14.14266 -13.94452 -13.68425 -13.32708 -13.04546 -12.91508 -12.71688 -12.29723 -12.20382 -12.13306 -11.96946 -11.74122 -11.63326 -11.46008 -11.25972 -11.15268 -11.06534 -10.91839 -10.87789 -10.47927 -10.33637 -10.10164 -9.69139 -9.44977 -9.37880 -9.10920 -9.01659 -7.49584 -6.99882 -6.74247 -4.36498 1.52368 2.45112 2.75919 2.92685 3.09078 3.13709 3.20142 3.55709 3.77286 3.95074 3.98791 4.10962 4.36498 4.44462 4.62058 4.68418 4.73788 4.77365 4.96568 5.04367 5.12032 5.17733 5.31782 5.43710 5.54089 5.59242 5.61828 5.67097 5.70147 5.92083 5.95836 6.08279 6.20842 6.35668 6.60109 6.82945 6.98156 7.01624 7.09694 7.21340 7.23248 7.44121 7.64964 7.79045 7.90481 8.04608 8.08661 8.16433 8.45327 8.64398 8.90089 8.94144 10.19570 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017278 B = 0.002160 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.137381 B =12959.468642 C =14339.544333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.119 4.119 4 H 0.077 0.923 5 C -0.156 4.156 6 C 0.098 3.902 7 H 0.108 0.892 8 O -0.553 6.553 9 C 0.083 3.917 10 N -0.698 5.698 11 C 0.512 3.488 12 O -0.526 6.526 13 C 0.496 3.504 14 O -0.497 6.497 15 N -0.633 5.633 16 C 0.144 3.856 17 C -0.255 4.255 18 C -0.092 4.092 19 C -0.168 4.168 20 C 0.119 3.881 21 C -0.457 4.457 22 H 0.079 0.921 23 C 0.075 3.925 24 N -0.794 5.794 25 Si 0.910 3.090 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.262 1.262 29 C -0.208 4.208 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.377 0.623 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.418 0.582 42 H 0.410 0.590 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.280 0.720 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.990 -5.174 -4.174 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.138 4.138 4 H 0.095 0.905 5 C -0.213 4.213 6 C 0.039 3.961 7 H 0.126 0.874 8 O -0.358 6.358 9 C -0.041 4.041 10 N -0.352 5.352 11 C 0.292 3.708 12 O -0.403 6.403 13 C 0.276 3.724 14 O -0.371 6.371 15 N -0.278 5.278 16 C 0.053 3.947 17 C -0.276 4.276 18 C -0.111 4.111 19 C -0.187 4.187 20 C 0.116 3.884 21 C -0.487 4.487 22 H 0.097 0.903 23 C -0.142 4.142 24 N -0.420 5.420 25 Si 0.734 3.266 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.186 1.186 29 C -0.229 4.229 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.224 0.776 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.255 0.745 42 H 0.246 0.754 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.523 -5.451 -4.469 22.647 hybrid contribution 0.125 0.025 0.633 0.646 sum -21.398 -5.425 -3.836 22.406 Atomic orbital electron populations 1.21829 0.95849 1.01657 1.01809 1.21498 0.95650 0.95367 1.02875 1.21801 0.94746 0.97681 0.99593 0.90511 1.21967 1.02034 1.00670 0.96600 1.22254 0.93870 0.91408 0.88610 0.87425 1.86645 1.76917 1.56794 1.15481 1.22303 0.79893 0.98203 1.03685 1.45641 1.06982 1.09327 1.73282 1.20336 0.88841 0.84258 0.77319 1.90732 1.70113 1.31095 1.48323 1.19931 0.87641 0.85179 0.79614 1.90824 1.69128 1.30736 1.46441 1.43131 1.06897 1.08396 1.69423 1.17451 0.79151 0.99172 0.98969 1.20068 0.94050 1.04010 1.09507 1.20473 0.93056 0.98401 0.99128 1.21389 1.00036 0.97812 0.99487 1.17484 0.89956 0.91537 0.89442 1.19589 1.00679 1.01169 1.27228 0.90254 1.25916 0.97937 0.96255 0.94140 1.69824 1.18783 1.19526 1.33823 0.86283 0.79815 0.81665 0.78799 1.19245 1.20349 1.18567 1.20970 0.94627 1.02329 1.05013 0.92827 0.92757 0.92556 0.91015 0.91884 0.92216 0.91858 0.91997 0.77552 0.89720 0.90726 0.74491 0.75401 0.88988 0.88808 0.86170 0.90873 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.67 5.33 -26.73 -0.14 -0.81 16 3 C -0.12 -0.65 2.16 -90.62 -0.20 -0.84 16 4 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 5 C -0.16 -0.82 8.60 37.16 0.32 -0.50 16 6 C 0.10 0.68 2.58 -26.73 -0.07 0.61 16 7 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 8 O -0.55 -4.44 12.53 -35.23 -0.44 -4.88 16 9 C 0.08 0.72 5.10 -4.04 -0.02 0.70 16 10 N -0.70 -8.33 5.50 -60.76 -0.33 -8.67 16 11 C 0.51 7.80 7.89 -11.63 -0.09 7.71 16 12 O -0.53 -8.63 16.48 5.50 0.09 -8.54 16 13 C 0.50 9.16 7.61 -11.63 -0.09 9.08 16 14 O -0.50 -10.54 14.23 5.48 0.08 -10.46 16 15 N -0.63 -12.08 5.32 -10.34 -0.06 -12.13 16 16 C 0.14 3.30 6.25 -83.82 -0.52 2.77 16 17 C -0.26 -5.66 9.97 -39.09 -0.39 -6.05 16 18 C -0.09 -2.13 10.01 -39.70 -0.40 -2.52 16 19 C -0.17 -4.36 8.69 -38.83 -0.34 -4.70 16 20 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 21 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 22 H 0.08 2.12 7.90 -52.49 -0.41 1.70 16 23 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 24 N -0.79 -20.53 10.94 55.55 0.61 -19.92 16 25 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 28 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 29 C -0.21 -5.36 8.39 -38.67 -0.32 -5.68 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 33 H 0.07 0.47 7.54 -51.92 -0.39 0.07 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 37 H 0.06 0.34 6.32 -51.93 -0.33 0.01 16 38 H 0.38 1.94 9.05 45.56 0.41 2.35 16 39 H 0.08 0.72 6.17 -51.93 -0.32 0.40 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.42 5.00 7.94 -40.82 -0.32 4.67 16 42 H 0.41 6.76 8.30 -40.82 -0.34 6.42 16 43 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 46 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 47 H 0.11 2.77 6.48 -52.49 -0.34 2.43 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -30.98 388.31 -8.15 -39.13 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -5.99 Total: 14.63 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.93 Total: -8.93 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.22 Total: -40.72 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.27 Total: -23.88 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.98 -8.15 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453657042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.758 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds