Wall clock time and date at job start Tue Mar 31 2020 17:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 H 1.08997 * 109.46978 * 54.99733 * 3 2 1 5 5 C 1.53001 * 109.46880 * 294.99752 * 3 2 1 6 6 C 1.52993 * 109.47150 * 174.99791 * 3 2 1 7 7 H 1.09010 * 109.47401 * 59.99476 * 6 3 2 8 8 O 1.42905 * 109.47293 * 300.00002 * 6 3 2 9 9 C 1.52999 * 109.47236 * 179.97438 * 6 3 2 10 10 N 1.46507 * 109.46947 * 184.99904 * 9 6 3 11 11 C 1.34779 * 119.99385 * 180.02562 * 10 9 6 12 12 O 1.21350 * 120.00443 * 359.97438 * 11 10 9 13 13 C 1.49353 * 119.99442 * 179.97438 * 11 10 9 14 14 O 1.21374 * 120.00388 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99986 * 179.97438 * 13 11 10 16 16 C 1.39741 * 120.00137 * 174.88735 * 15 13 11 17 17 C 1.39342 * 119.95183 * 145.76817 * 16 15 13 18 18 C 1.38467 * 120.42758 * 179.97438 * 17 16 15 19 19 C 1.37694 * 120.32625 * 359.97438 * 18 17 16 20 20 C 1.40749 * 119.89509 * 0.02562 * 19 18 17 21 21 C 1.41413 * 120.20617 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00138 * 205.17578 * 21 20 19 23 23 C 1.39933 * 120.00296 * 25.18612 * 21 20 19 24 24 N 1.30833 * 119.99718 * 16.78614 * 23 21 20 25 25 Si 1.86800 * 120.00330 * 196.79033 * 23 21 20 26 26 H 1.48500 * 109.47070 * 89.99730 * 25 23 21 27 27 H 1.48500 * 109.47040 * 209.99635 * 25 23 21 28 28 H 1.48501 * 109.46749 * 329.99756 * 25 23 21 29 29 C 1.38308 * 119.95618 * 325.49820 * 16 15 13 30 30 H 1.08992 * 109.47304 * 300.00078 * 1 2 3 31 31 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47062 * 60.00444 * 1 2 3 33 33 H 1.09009 * 109.46572 * 119.99461 * 2 1 3 34 34 H 1.08993 * 109.47104 * 239.99407 * 2 1 3 35 35 H 1.09007 * 109.47096 * 300.00280 * 5 3 2 36 36 H 1.08997 * 109.46915 * 59.99809 * 5 3 2 37 37 H 1.08996 * 109.47189 * 180.02562 * 5 3 2 38 38 H 0.96707 * 113.99299 * 300.00027 * 8 6 3 39 39 H 1.08992 * 109.47224 * 304.99753 * 9 6 3 40 40 H 1.09002 * 109.46764 * 65.00275 * 9 6 3 41 41 H 0.96994 * 120.00194 * 0.02562 * 10 9 6 42 42 H 0.96999 * 119.99870 * 354.90084 * 15 13 11 43 43 H 1.08003 * 119.78702 * 359.95784 * 17 16 15 44 44 H 1.07996 * 119.84080 * 179.97438 * 18 17 16 45 45 H 1.08006 * 120.05441 * 180.02562 * 19 18 17 46 46 H 0.97000 * 119.99746 * 180.02562 * 24 23 21 47 47 H 1.07997 * 120.15931 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.9995 0.9052 -0.7160 8 8 3.9429 0.8055 1.3469 9 6 4.0749 2.8868 0.1251 10 7 5.5399 2.8867 0.1252 11 6 6.2138 4.0540 0.1252 12 8 5.6071 5.1049 0.1247 13 6 7.7073 4.0539 0.1259 14 8 8.3142 3.0028 0.1269 15 7 8.3813 5.2211 0.1254 16 6 9.7745 5.2235 0.2338 17 6 10.5225 6.1911 -0.4338 18 6 11.9035 6.2031 -0.3328 19 6 12.5530 5.2582 0.4297 20 6 11.8108 4.2745 1.1098 21 6 12.4712 3.3007 1.8943 22 1 12.0021 2.3451 2.0763 23 6 13.7323 3.5752 2.4348 24 7 14.1598 4.8098 2.5037 25 14 14.8056 2.1790 3.0579 26 1 15.6625 1.6818 1.9516 27 1 15.6634 2.6706 4.1659 28 1 13.9440 1.0747 3.5513 29 6 10.4086 4.2689 1.0081 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1251 -1.3970 37 1 1.9990 3.1540 -1.3077 38 1 3.5906 1.2328 2.1397 39 1 3.7116 3.4003 -0.7651 40 1 3.7115 3.4010 1.0149 41 1 6.0249 2.0467 0.1252 42 1 7.8992 6.0594 0.0499 43 1 10.0220 6.9365 -1.0341 44 1 12.4739 6.9572 -0.8545 45 1 13.6303 5.2719 0.5058 46 1 15.0342 5.0001 2.8781 47 1 9.8295 3.5213 1.5298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453657042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:15 Heat of formation + Delta-G solvation = -139.170751 kcal Electronic energy + Delta-G solvation = -27839.778987 eV Core-core repulsion = 23792.716267 eV Total energy + Delta-G solvation = -4047.062720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00940 -40.43392 -39.45732 -38.84377 -36.57346 -35.96078 -35.49727 -34.77805 -31.79863 -31.63369 -30.33683 -28.81077 -27.30425 -26.55428 -25.34342 -23.22238 -22.86116 -22.53996 -21.49453 -20.96188 -19.96725 -19.27863 -18.02534 -17.68623 -17.48541 -17.15465 -16.71959 -16.71039 -16.47340 -16.05158 -15.78183 -15.38349 -15.27837 -14.92291 -14.79118 -14.67421 -14.44276 -14.03834 -13.86122 -13.57721 -13.35798 -13.08742 -13.03426 -12.89421 -12.81510 -12.69716 -12.58548 -12.42996 -12.19451 -12.13643 -11.91748 -11.54758 -11.50658 -11.35904 -11.21266 -10.97631 -10.90353 -10.58279 -10.37397 -9.43657 -8.85091 -8.63735 -6.38403 0.11246 0.93715 1.02743 1.27983 1.37721 1.50993 1.51275 2.09389 2.21115 2.57620 2.71708 3.31282 3.41112 3.51382 3.70078 3.84630 3.94661 4.15921 4.24069 4.43131 4.47748 4.57811 4.58240 4.61404 4.70541 4.81318 4.87993 4.89904 5.04638 5.05655 5.07463 5.10926 5.11702 5.17499 5.19069 5.28107 5.28660 5.48668 5.55443 5.58492 5.76402 5.93752 6.03733 6.07338 6.27058 6.35248 6.62349 6.69151 6.77641 6.87538 6.95039 7.00375 8.32168 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017278 B = 0.002160 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.137381 B =12959.468642 C =14339.544333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.111 4.111 4 H 0.086 0.914 5 C -0.156 4.156 6 C 0.106 3.894 7 H 0.104 0.896 8 O -0.569 6.569 9 C 0.081 3.919 10 N -0.683 5.683 11 C 0.521 3.479 12 O -0.536 6.536 13 C 0.493 3.507 14 O -0.528 6.528 15 N -0.629 5.629 16 C 0.149 3.851 17 C -0.247 4.247 18 C -0.089 4.089 19 C -0.192 4.192 20 C 0.089 3.911 21 C -0.498 4.498 22 H 0.067 0.933 23 C 0.037 3.963 24 N -0.821 5.821 25 Si 0.983 3.017 26 H -0.260 1.260 27 H -0.263 1.263 28 H -0.264 1.264 29 C -0.232 4.232 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.389 0.611 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.418 0.582 42 H 0.425 0.575 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.290 0.710 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.356 -4.759 -4.703 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.130 4.130 4 H 0.104 0.896 5 C -0.213 4.213 6 C 0.047 3.953 7 H 0.122 0.878 8 O -0.377 6.377 9 C -0.042 4.042 10 N -0.336 5.336 11 C 0.301 3.699 12 O -0.414 6.414 13 C 0.276 3.724 14 O -0.404 6.404 15 N -0.275 5.275 16 C 0.056 3.944 17 C -0.268 4.268 18 C -0.108 4.108 19 C -0.212 4.212 20 C 0.086 3.914 21 C -0.528 4.528 22 H 0.085 0.915 23 C -0.178 4.178 24 N -0.446 5.446 25 Si 0.803 3.197 26 H -0.185 1.185 27 H -0.188 1.188 28 H -0.188 1.188 29 C -0.254 4.254 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.238 0.762 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.256 0.744 42 H 0.263 0.737 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.947 -5.023 -5.002 24.017 hybrid contribution 0.408 -0.067 0.743 0.851 sum -22.539 -5.091 -4.259 23.496 Atomic orbital electron populations 1.21817 0.95184 1.01818 1.02176 1.21469 0.96192 0.95335 1.02253 1.21729 0.93347 0.97701 1.00200 0.89568 1.21974 1.02544 1.00469 0.96299 1.22206 0.94839 0.90012 0.88280 0.87807 1.86624 1.77377 1.57349 1.16332 1.22582 0.77449 0.99684 1.04436 1.45701 1.08423 1.08194 1.71234 1.19636 0.86980 0.85114 0.78172 1.90736 1.69586 1.31493 1.49583 1.20599 0.89306 0.84375 0.78170 1.90814 1.70289 1.31803 1.47463 1.43044 1.05528 1.09535 1.69428 1.17526 0.81063 0.98145 0.97619 1.20488 0.93782 1.03941 1.08540 1.20837 0.93931 0.97967 0.98031 1.21365 0.99542 0.99105 1.01159 1.17828 0.90913 0.92420 0.90224 1.19751 1.02561 1.01143 1.29304 0.91513 1.26717 0.98432 0.98862 0.93799 1.69853 1.19519 1.21139 1.34124 0.85201 0.77777 0.78067 0.78635 1.18451 1.18760 1.18757 1.20937 0.94341 1.03432 1.06679 0.92515 0.92765 0.92105 0.91856 0.92328 0.92315 0.91133 0.92078 0.76155 0.88877 0.89955 0.74427 0.73673 0.85117 0.85608 0.87491 0.89929 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 71.98 0.70 -0.60 16 2 C -0.11 -1.16 5.33 30.60 0.16 -1.00 16 3 C -0.11 -1.00 2.16 -10.79 -0.02 -1.02 16 4 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 5 C -0.16 -1.32 8.60 71.98 0.62 -0.71 16 6 C 0.11 1.32 2.58 30.59 0.08 1.40 16 7 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 8 O -0.57 -8.44 12.53 -148.98 -1.87 -10.31 16 9 C 0.08 1.26 5.10 86.38 0.44 1.70 16 10 N -0.68 -15.48 5.50 -464.51 -2.55 -18.04 16 11 C 0.52 15.30 7.89 87.24 0.69 15.99 16 12 O -0.54 -16.62 16.48 -3.25 -0.05 -16.67 16 13 C 0.49 18.13 7.61 87.24 0.66 18.79 16 14 O -0.53 -22.84 14.23 -3.32 -0.05 -22.89 16 15 N -0.63 -23.45 5.32 -304.98 -1.62 -25.08 16 16 C 0.15 6.79 6.25 38.16 0.24 7.03 16 17 C -0.25 -10.47 9.97 22.59 0.23 -10.24 16 18 C -0.09 -4.03 10.01 22.20 0.22 -3.81 16 19 C -0.19 -10.20 8.69 22.76 0.20 -10.01 16 20 C 0.09 5.05 5.57 -21.31 -0.12 4.93 16 21 C -0.50 -28.35 9.05 23.46 0.21 -28.14 16 22 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 23 C 0.04 1.92 5.16 85.25 0.44 2.36 16 24 N -0.82 -43.29 10.94 21.82 0.24 -43.05 16 25 Si 0.98 39.45 29.59 68.60 2.03 41.48 16 26 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 27 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 28 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 29 C -0.23 -12.39 8.39 22.86 0.19 -12.19 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.47 6.56 -2.39 -0.02 0.45 16 33 H 0.06 0.76 7.54 -2.38 -0.02 0.74 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.07 0.51 6.56 -2.39 -0.02 0.50 16 37 H 0.06 0.54 6.32 -2.39 -0.02 0.52 16 38 H 0.39 3.44 9.05 -74.05 -0.67 2.77 16 39 H 0.09 1.37 6.17 -2.39 -0.01 1.36 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.42 9.72 7.94 -92.71 -0.74 8.98 16 42 H 0.42 13.24 8.30 -92.71 -0.77 12.47 16 43 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 45 H 0.11 5.87 6.16 -2.91 -0.02 5.86 16 46 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 47 H 0.09 4.95 6.48 -2.91 -0.02 4.93 16 Total: -1.00 -68.52 388.31 -0.08 -68.61 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -1.15 Total: 41.45 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.93 Total: -15.52 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.94 Total: -86.16 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -1.97 Total: -49.87 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -68.52 -0.08 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453657042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.564 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds