Wall clock time and date at job start Tue Mar 31 2020 17:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46737 * 2 1 4 4 H 1.08995 * 109.47052 * 304.99991 * 3 2 1 5 5 N 1.46494 * 109.46853 * 65.00267 * 3 2 1 6 6 C 1.34777 * 120.00028 * 274.99079 * 5 3 2 7 7 O 1.21356 * 119.99839 * 0.02562 * 6 5 3 8 8 C 1.49355 * 120.00213 * 180.02562 * 6 5 3 9 9 O 1.21377 * 120.00081 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00346 * 180.28080 * 8 6 5 11 11 C 1.39736 * 120.00311 * 174.61975 * 10 8 6 12 12 C 1.39346 * 119.95473 * 145.75620 * 11 10 8 13 13 C 1.38465 * 120.42493 * 179.97438 * 12 11 10 14 14 C 1.37702 * 120.32991 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.89278 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20645 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99982 * 205.18666 * 16 15 14 18 18 C 1.39933 * 120.00158 * 25.18618 * 16 15 14 19 19 N 1.30832 * 119.99724 * 16.79149 * 18 16 15 20 20 Si 1.86798 * 120.00014 * 196.79242 * 18 16 15 21 21 H 1.48500 * 109.47168 * 90.00187 * 20 18 16 22 22 H 1.48500 * 109.47061 * 209.99742 * 20 18 16 23 23 H 1.48498 * 109.47351 * 330.00198 * 20 18 16 24 24 C 1.38298 * 119.95120 * 325.48112 * 11 10 8 25 25 C 1.53000 * 109.46980 * 184.99929 * 3 2 1 26 26 C 1.53004 * 109.47072 * 64.99833 * 25 3 2 27 27 C 1.52991 * 109.47446 * 185.00005 * 25 3 2 28 28 O 1.42900 * 109.47386 * 305.00505 * 25 3 2 29 29 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47169 * 299.99931 * 1 2 3 31 31 H 1.09002 * 109.47259 * 59.99944 * 1 2 3 32 32 H 1.09001 * 109.46721 * 240.00165 * 2 1 3 33 33 H 1.08995 * 109.47034 * 120.00369 * 2 1 3 34 34 H 0.97005 * 120.00258 * 95.00123 * 5 3 2 35 35 H 0.97003 * 119.99643 * 354.61119 * 10 8 6 36 36 H 1.08007 * 119.78826 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.84041 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.05041 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99770 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.16681 * 0.02562 * 24 11 10 41 41 H 1.09006 * 109.47090 * 60.00032 * 26 25 3 42 42 H 1.08997 * 109.47025 * 179.97438 * 26 25 3 43 43 H 1.08999 * 109.47518 * 300.00627 * 26 25 3 44 44 H 1.09005 * 109.47174 * 59.99995 * 27 25 3 45 45 H 1.08997 * 109.47487 * 179.97438 * 27 25 3 46 46 H 1.09003 * 109.47393 * 300.00568 * 27 25 3 47 47 H 0.96699 * 113.99732 * 300.00287 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3401 2.6320 0.4338 8 6 0.0401 3.3325 2.6430 9 8 0.8156 3.3653 3.5762 10 7 -1.1793 3.8945 2.7601 11 6 -1.5915 4.4199 3.9876 12 6 -2.4077 5.5488 4.0223 13 6 -2.8224 6.0772 5.2331 14 6 -2.4328 5.4920 6.4172 15 6 -1.6085 4.3514 6.3980 16 6 -1.2039 3.7454 7.6099 17 1 -0.2943 3.1645 7.6459 18 6 -1.9823 3.8986 8.7627 19 7 -3.2217 4.3062 8.6657 20 14 -1.2517 3.5211 10.4399 21 1 -0.6301 4.7493 10.9969 22 1 -2.3247 3.0516 11.3529 23 1 -0.2195 2.4623 10.3033 24 6 -1.1935 3.8154 5.1660 25 6 3.5648 1.4445 -0.1257 26 6 3.9649 0.8736 -1.4877 27 6 4.0851 2.8777 -0.0006 28 8 4.1293 0.6405 0.9120 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2719 2.1231 1.9978 35 1 -1.7707 3.9344 1.9922 36 1 -2.7189 6.0146 3.0989 37 1 -3.4553 6.9522 5.2491 38 1 -2.7585 5.9082 7.3590 39 1 -3.7611 4.4127 9.4648 40 1 -0.5642 2.9380 5.1404 41 1 3.5343 1.4868 -2.2794 42 1 5.0512 0.8754 -1.5774 43 1 3.5942 -0.1475 -1.5769 44 1 3.8000 3.2844 0.9697 45 1 5.1714 2.8790 -0.0897 46 1 3.6544 3.4910 -0.7922 47 1 3.9162 0.9444 1.8050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453773870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:45 Heat of formation + Delta-G solvation = -106.370360 kcal Electronic energy + Delta-G solvation = -29030.613595 eV Core-core repulsion = 24984.973207 eV Total energy + Delta-G solvation = -4045.640388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99259 -39.58819 -38.27787 -37.16515 -35.24568 -34.52638 -33.13751 -32.69325 -32.19548 -29.89882 -28.59504 -27.72200 -26.90982 -25.38508 -24.27339 -22.00333 -21.32292 -20.89863 -20.57901 -19.87608 -18.64644 -17.73286 -16.95630 -16.73257 -16.01073 -15.67585 -15.54107 -15.19538 -14.84172 -14.70792 -14.65523 -14.44003 -14.03402 -13.40779 -13.23715 -13.06196 -12.91509 -12.81653 -12.59819 -12.49226 -12.24869 -12.13698 -11.90106 -11.79760 -11.70602 -11.43912 -11.28942 -11.17696 -11.06490 -10.95981 -10.87780 -10.50445 -10.35599 -10.13900 -9.72425 -9.49531 -9.30585 -9.13676 -9.04919 -7.52648 -7.03408 -6.77041 -4.39527 1.47612 2.39502 2.73100 2.89086 3.07156 3.11419 3.17575 3.51068 3.73341 3.80997 3.93068 4.17745 4.43972 4.56829 4.59132 4.64750 4.87864 4.98012 5.20915 5.23645 5.35995 5.42149 5.44860 5.52879 5.63988 5.71907 5.75098 5.84493 5.85770 5.98324 6.15714 6.17787 6.30331 6.32355 6.55694 6.78032 6.94682 6.98173 7.03044 7.19181 7.23690 7.39199 7.61377 7.74326 7.87234 8.00983 8.05064 8.12619 8.41018 8.61184 8.87063 8.91051 10.16843 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.002672 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.793618 B =10476.881161 C =11281.318280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.117 3.883 4 H 0.100 0.900 5 N -0.699 5.699 6 C 0.515 3.485 7 O -0.515 6.515 8 C 0.495 3.505 9 O -0.500 6.500 10 N -0.632 5.632 11 C 0.144 3.856 12 C -0.255 4.255 13 C -0.091 4.091 14 C -0.168 4.168 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.208 4.208 25 C 0.121 3.879 26 C -0.139 4.139 27 C -0.182 4.182 28 O -0.553 6.553 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.281 0.719 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.876 -4.941 -15.807 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.013 3.987 4 H 0.118 0.882 5 N -0.354 5.354 6 C 0.296 3.704 7 O -0.390 6.390 8 C 0.275 3.725 9 O -0.375 6.375 10 N -0.277 5.277 11 C 0.053 3.947 12 C -0.276 4.276 13 C -0.111 4.111 14 C -0.188 4.188 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.229 4.229 25 C 0.080 3.920 26 C -0.196 4.196 27 C -0.239 4.239 28 O -0.359 6.359 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.245 0.755 35 H 0.246 0.754 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.900 -5.267 -16.202 19.705 hybrid contribution -0.113 0.243 1.222 1.251 sum 9.787 -5.024 -14.980 18.586 Atomic orbital electron populations 1.21841 0.94809 1.00940 1.02946 1.21915 0.96757 0.95074 1.03113 1.21902 0.94951 0.94464 0.87396 0.88242 1.45743 1.16306 1.56366 1.16997 1.20242 0.82454 0.79240 0.88494 1.90751 1.50548 1.57834 1.39883 1.19981 0.83251 0.81150 0.88088 1.90814 1.50514 1.56560 1.39575 1.43132 1.15447 1.56030 1.13104 1.17439 0.99518 0.94708 0.83073 1.20068 1.10459 1.00006 0.97091 1.20481 0.99395 0.98602 0.92580 1.21394 1.03330 0.97185 0.96841 1.17477 0.89322 0.89982 0.91574 1.19587 1.07768 1.28489 0.92871 0.90271 1.25914 0.94009 0.92919 1.01386 1.69821 1.06329 1.34277 1.31473 0.86284 0.79684 0.79765 0.80843 1.19236 1.20325 1.18566 1.20957 1.09152 1.02120 0.90707 1.21495 0.89800 0.90877 0.89806 1.21783 1.02647 1.01990 0.93208 1.22514 1.02277 0.95913 1.03242 1.86585 1.76426 1.55664 1.17259 0.93284 0.92599 0.92153 0.90674 0.91037 0.75530 0.75380 0.88998 0.88798 0.86171 0.90841 0.87626 0.90835 0.91293 0.91179 0.91774 0.91302 0.91287 0.77620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.51 37.16 0.32 -1.34 16 2 C -0.13 -1.22 5.19 -26.73 -0.14 -1.36 16 3 C 0.12 1.07 1.63 -67.93 -0.11 0.96 16 4 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 5 N -0.70 -7.59 4.24 -54.27 -0.23 -7.82 16 6 C 0.51 7.25 6.46 -11.63 -0.08 7.18 16 7 O -0.51 -7.72 13.62 5.49 0.07 -7.64 16 8 C 0.49 8.66 7.61 -11.63 -0.09 8.57 16 9 O -0.50 -10.03 14.23 5.47 0.08 -9.95 16 10 N -0.63 -11.60 5.32 -10.34 -0.06 -11.65 16 11 C 0.14 3.22 6.25 -83.82 -0.52 2.69 16 12 C -0.26 -5.55 9.97 -39.09 -0.39 -5.94 16 13 C -0.09 -2.10 10.01 -39.69 -0.40 -2.49 16 14 C -0.17 -4.31 8.69 -38.83 -0.34 -4.65 16 15 C 0.12 3.21 5.57 -106.85 -0.59 2.61 16 16 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 17 H 0.08 2.08 7.90 -52.49 -0.41 1.66 16 18 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 19 N -0.79 -20.31 10.94 55.55 0.61 -19.70 16 20 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.21 -5.24 8.39 -38.67 -0.32 -5.56 16 25 C 0.12 0.94 0.84 -90.62 -0.08 0.87 16 26 C -0.14 -0.91 8.60 37.16 0.32 -0.59 16 27 C -0.18 -1.37 8.60 37.15 0.32 -1.05 16 28 O -0.55 -4.75 12.20 -35.23 -0.43 -5.18 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.75 5.64 -51.93 -0.29 0.46 16 31 H 0.06 0.69 7.85 -51.93 -0.41 0.29 16 32 H 0.07 0.60 6.34 -51.93 -0.33 0.27 16 33 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 34 H 0.41 4.07 6.38 -40.82 -0.26 3.80 16 35 H 0.41 6.50 8.30 -40.82 -0.34 6.17 16 36 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.17 6.17 -52.49 -0.32 2.84 16 39 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 40 H 0.11 2.69 6.48 -52.48 -0.34 2.35 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.46 6.46 -51.93 -0.34 0.12 16 44 H 0.06 0.52 7.13 -51.93 -0.37 0.15 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.38 2.50 7.81 45.56 0.36 2.86 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -29.80 378.87 -7.75 -37.56 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -5.95 Total: 15.90 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.53 Total: -10.89 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.32 Total: -39.17 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.28 Total: -22.77 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.80 -7.75 -37.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453773870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.814 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds