Wall clock time and date at job start Tue Mar 31 2020 17:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46737 * 2 1 4 4 H 1.08995 * 109.47052 * 304.99991 * 3 2 1 5 5 N 1.46494 * 109.46853 * 65.00267 * 3 2 1 6 6 C 1.34777 * 120.00028 * 274.99079 * 5 3 2 7 7 O 1.21356 * 119.99839 * 0.02562 * 6 5 3 8 8 C 1.49355 * 120.00213 * 180.02562 * 6 5 3 9 9 O 1.21377 * 120.00081 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00346 * 180.28080 * 8 6 5 11 11 C 1.39736 * 120.00311 * 174.61975 * 10 8 6 12 12 C 1.39346 * 119.95473 * 145.75620 * 11 10 8 13 13 C 1.38465 * 120.42493 * 179.97438 * 12 11 10 14 14 C 1.37702 * 120.32991 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.89278 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.20645 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99982 * 205.18666 * 16 15 14 18 18 C 1.39933 * 120.00158 * 25.18618 * 16 15 14 19 19 N 1.30832 * 119.99724 * 16.79149 * 18 16 15 20 20 Si 1.86798 * 120.00014 * 196.79242 * 18 16 15 21 21 H 1.48500 * 109.47168 * 90.00187 * 20 18 16 22 22 H 1.48500 * 109.47061 * 209.99742 * 20 18 16 23 23 H 1.48498 * 109.47351 * 330.00198 * 20 18 16 24 24 C 1.38298 * 119.95120 * 325.48112 * 11 10 8 25 25 C 1.53000 * 109.46980 * 184.99929 * 3 2 1 26 26 C 1.53004 * 109.47072 * 64.99833 * 25 3 2 27 27 C 1.52991 * 109.47446 * 185.00005 * 25 3 2 28 28 O 1.42900 * 109.47386 * 305.00505 * 25 3 2 29 29 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47169 * 299.99931 * 1 2 3 31 31 H 1.09002 * 109.47259 * 59.99944 * 1 2 3 32 32 H 1.09001 * 109.46721 * 240.00165 * 2 1 3 33 33 H 1.08995 * 109.47034 * 120.00369 * 2 1 3 34 34 H 0.97005 * 120.00258 * 95.00123 * 5 3 2 35 35 H 0.97003 * 119.99643 * 354.61119 * 10 8 6 36 36 H 1.08007 * 119.78826 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.84041 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.05041 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99770 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.16681 * 0.02562 * 24 11 10 41 41 H 1.09006 * 109.47090 * 60.00032 * 26 25 3 42 42 H 1.08997 * 109.47025 * 179.97438 * 26 25 3 43 43 H 1.08999 * 109.47518 * 300.00627 * 26 25 3 44 44 H 1.09005 * 109.47174 * 59.99995 * 27 25 3 45 45 H 1.08997 * 109.47487 * 179.97438 * 27 25 3 46 46 H 1.09003 * 109.47393 * 300.00568 * 27 25 3 47 47 H 0.96699 * 113.99732 * 300.00287 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3401 2.6320 0.4338 8 6 0.0401 3.3325 2.6430 9 8 0.8156 3.3653 3.5762 10 7 -1.1793 3.8945 2.7601 11 6 -1.5915 4.4199 3.9876 12 6 -2.4077 5.5488 4.0223 13 6 -2.8224 6.0772 5.2331 14 6 -2.4328 5.4920 6.4172 15 6 -1.6085 4.3514 6.3980 16 6 -1.2039 3.7454 7.6099 17 1 -0.2943 3.1645 7.6459 18 6 -1.9823 3.8986 8.7627 19 7 -3.2217 4.3062 8.6657 20 14 -1.2517 3.5211 10.4399 21 1 -0.6301 4.7493 10.9969 22 1 -2.3247 3.0516 11.3529 23 1 -0.2195 2.4623 10.3033 24 6 -1.1935 3.8154 5.1660 25 6 3.5648 1.4445 -0.1257 26 6 3.9649 0.8736 -1.4877 27 6 4.0851 2.8777 -0.0006 28 8 4.1293 0.6405 0.9120 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2719 2.1231 1.9978 35 1 -1.7707 3.9344 1.9922 36 1 -2.7189 6.0146 3.0989 37 1 -3.4553 6.9522 5.2491 38 1 -2.7585 5.9082 7.3590 39 1 -3.7611 4.4127 9.4648 40 1 -0.5642 2.9380 5.1404 41 1 3.5343 1.4868 -2.2794 42 1 5.0512 0.8754 -1.5774 43 1 3.5942 -0.1475 -1.5769 44 1 3.8000 3.2844 0.9697 45 1 5.1714 2.8790 -0.0897 46 1 3.6544 3.4910 -0.7922 47 1 3.9162 0.9444 1.8050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453773870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:45 Heat of formation + Delta-G solvation = -127.017341 kcal Electronic energy + Delta-G solvation = -29031.508916 eV Core-core repulsion = 24984.973207 eV Total energy + Delta-G solvation = -4046.535708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18376 -40.79770 -39.40259 -38.81908 -36.53055 -35.83304 -34.85716 -33.63397 -32.88968 -31.79598 -30.31694 -28.30858 -27.88156 -27.28859 -25.55451 -23.16851 -22.79073 -22.41939 -21.42975 -21.18190 -20.01102 -19.32820 -18.09163 -17.78895 -17.48227 -17.02563 -16.88256 -16.49847 -16.42670 -15.79019 -15.75764 -15.41847 -15.30830 -14.93218 -14.70929 -14.31899 -13.98402 -13.94972 -13.58232 -13.51813 -13.17938 -13.10195 -13.05527 -13.02064 -12.88916 -12.82722 -12.71002 -12.60674 -12.45457 -12.19590 -11.90814 -11.72796 -11.71601 -11.53803 -11.19059 -11.07134 -10.93862 -10.61023 -10.22153 -9.43783 -8.85110 -8.63936 -6.38693 0.13027 0.93754 1.02940 1.27180 1.37760 1.50896 1.51173 2.11218 2.20759 2.55924 2.71664 3.17129 3.32239 3.48595 3.70017 3.77847 3.94678 4.14491 4.22582 4.41583 4.42720 4.57753 4.60453 4.70925 4.77392 4.83731 4.89585 4.95316 4.95538 4.99590 5.05177 5.07136 5.10782 5.11881 5.20004 5.21769 5.28275 5.39602 5.41598 5.58670 5.76253 5.93492 6.03685 6.07011 6.26860 6.35135 6.62070 6.65130 6.73520 6.87820 6.94762 7.00451 8.31913 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.002672 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.793618 B =10476.881161 C =11281.318280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.119 3.881 4 H 0.100 0.900 5 N -0.683 5.683 6 C 0.525 3.475 7 O -0.522 6.522 8 C 0.493 3.507 9 O -0.528 6.528 10 N -0.629 5.629 11 C 0.151 3.849 12 C -0.247 4.247 13 C -0.089 4.089 14 C -0.194 4.194 15 C 0.091 3.909 16 C -0.499 4.499 17 H 0.068 0.932 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.264 1.264 23 H -0.263 1.263 24 C -0.231 4.231 25 C 0.127 3.873 26 C -0.140 4.140 27 C -0.181 4.181 28 O -0.564 6.564 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.413 0.587 35 H 0.424 0.576 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.290 0.710 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.472 -4.981 -17.356 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.015 3.985 4 H 0.118 0.882 5 N -0.337 5.337 6 C 0.305 3.695 7 O -0.398 6.398 8 C 0.275 3.725 9 O -0.404 6.404 10 N -0.276 5.276 11 C 0.058 3.942 12 C -0.268 4.268 13 C -0.108 4.108 14 C -0.213 4.213 15 C 0.088 3.912 16 C -0.528 4.528 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.447 5.447 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.189 1.189 23 H -0.187 1.187 24 C -0.253 4.253 25 C 0.086 3.914 26 C -0.197 4.197 27 C -0.238 4.238 28 O -0.371 6.371 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.263 0.737 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 10.507 -5.318 -17.796 21.340 hybrid contribution -0.289 0.252 1.548 1.595 sum 10.218 -5.067 -16.248 19.851 Atomic orbital electron populations 1.21806 0.96086 1.00994 1.01452 1.21902 0.95452 0.95174 1.03916 1.22080 0.96149 0.94133 0.86110 0.88213 1.45728 1.15011 1.55007 1.17938 1.19530 0.83449 0.79656 0.86849 1.90756 1.51014 1.58547 1.39498 1.20651 0.82553 0.80228 0.89077 1.90804 1.51276 1.57263 1.41045 1.43047 1.16195 1.56092 1.12223 1.17499 0.98513 0.94436 0.83742 1.20481 1.08967 0.99145 0.98229 1.20836 0.98877 0.99122 0.91991 1.21371 1.04688 0.97748 0.97531 1.17811 0.90260 0.90813 0.92337 1.19762 1.08328 1.30244 0.94462 0.91409 1.26711 0.94072 0.92313 1.04664 1.69855 1.07251 1.34638 1.32952 0.85208 0.78985 0.79633 0.75910 1.18476 1.18860 1.18651 1.20929 1.10198 1.02469 0.91677 1.21523 0.88397 0.91142 0.90386 1.21837 1.03008 1.02278 0.92605 1.22508 1.02712 0.95703 1.02921 1.86579 1.76511 1.56085 1.17904 0.92548 0.95124 0.92467 0.88641 0.91435 0.74943 0.73727 0.85217 0.85720 0.87557 0.89951 0.89151 0.89424 0.90971 0.91018 0.92657 0.90722 0.90780 0.76886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.51 71.98 0.61 -2.48 16 2 C -0.13 -2.13 5.19 30.60 0.16 -1.98 16 3 C 0.12 1.96 1.63 44.99 0.07 2.04 16 4 H 0.10 1.74 7.58 -2.39 -0.02 1.72 16 5 N -0.68 -14.16 4.24 -443.98 -1.88 -16.04 16 6 C 0.53 14.40 6.46 87.24 0.56 14.96 16 7 O -0.52 -14.99 13.62 -3.27 -0.04 -15.03 16 8 C 0.49 17.22 7.61 87.24 0.66 17.89 16 9 O -0.53 -21.63 14.23 -3.33 -0.05 -21.68 16 10 N -0.63 -22.70 5.32 -304.98 -1.62 -24.32 16 11 C 0.15 6.72 6.25 38.16 0.24 6.95 16 12 C -0.25 -10.35 9.97 22.59 0.23 -10.12 16 13 C -0.09 -4.02 10.01 22.20 0.22 -3.80 16 14 C -0.19 -10.20 8.69 22.76 0.20 -10.00 16 15 C 0.09 5.07 5.57 -21.31 -0.12 4.95 16 16 C -0.50 -27.99 9.05 23.46 0.21 -27.77 16 17 H 0.07 3.79 7.90 -2.91 -0.02 3.76 16 18 C 0.04 1.93 5.16 85.25 0.44 2.37 16 19 N -0.82 -43.02 10.94 21.82 0.24 -42.78 16 20 Si 0.98 38.98 29.59 68.60 2.03 41.01 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 24 C -0.23 -12.07 8.39 22.86 0.19 -11.88 16 25 C 0.13 1.71 0.84 -10.79 -0.01 1.70 16 26 C -0.14 -1.48 8.60 71.98 0.62 -0.86 16 27 C -0.18 -2.39 8.60 71.98 0.62 -1.77 16 28 O -0.56 -8.75 12.20 -148.98 -1.82 -10.56 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 0.79 5.64 -2.39 -0.01 0.78 16 31 H 0.06 1.23 7.85 -2.39 -0.02 1.21 16 32 H 0.10 1.27 6.34 -2.39 -0.02 1.26 16 33 H 0.07 1.22 7.73 -2.39 -0.02 1.21 16 34 H 0.41 7.97 6.38 -92.70 -0.59 7.37 16 35 H 0.42 12.83 8.30 -92.71 -0.77 12.06 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 38 H 0.11 5.80 6.17 -2.91 -0.02 5.78 16 39 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 40 H 0.09 4.87 6.48 -2.91 -0.02 4.85 16 41 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.74 6.46 -2.39 -0.02 0.73 16 44 H 0.05 0.82 7.13 -2.38 -0.02 0.81 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.38 4.66 7.81 -74.06 -0.58 4.08 16 Total: -1.00 -66.21 378.87 0.86 -65.35 By element: Atomic # 1 Polarization: 44.76 SS G_CDS: -0.91 Total: 43.85 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 4.91 Total: -19.79 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -3.26 Total: -83.15 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -1.91 Total: -47.28 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -66.21 0.86 -65.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453773870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.663 kcal (2) G-P(sol) polarization free energy of solvation -66.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds