Wall clock time and date at job start Tue Mar 31 2020 17:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47365 * 2 1 4 4 H 1.09002 * 109.47256 * 305.00004 * 3 2 1 5 5 N 1.46503 * 109.47127 * 64.99634 * 3 2 1 6 6 C 1.34776 * 120.00043 * 275.27710 * 5 3 2 7 7 O 1.21358 * 120.00315 * 359.72311 * 6 5 3 8 8 C 1.49356 * 119.99862 * 179.72500 * 6 5 3 9 9 O 1.21378 * 119.99899 * 0.02562 * 8 6 5 10 10 N 1.34772 * 120.00330 * 180.02562 * 8 6 5 11 11 C 1.39742 * 120.00459 * 174.89098 * 10 8 6 12 12 C 1.39342 * 119.95712 * 145.76124 * 11 10 8 13 13 C 1.38462 * 120.42559 * 179.97438 * 12 11 10 14 14 C 1.37697 * 120.32974 * 359.97438 * 13 12 11 15 15 C 1.40746 * 119.89512 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.20855 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00136 * 205.17924 * 16 15 14 18 18 C 1.39932 * 119.99687 * 25.18933 * 16 15 14 19 19 N 1.30830 * 120.00104 * 16.78378 * 18 16 15 20 20 Si 1.86796 * 119.99825 * 196.78907 * 18 16 15 21 21 H 1.48504 * 109.47394 * 59.99602 * 20 18 16 22 22 H 1.48501 * 109.47196 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47367 * 299.99441 * 20 18 16 24 24 C 1.38302 * 119.94873 * 325.48383 * 11 10 8 25 25 C 1.52997 * 109.47430 * 185.00253 * 3 2 1 26 26 H 1.09010 * 109.47129 * 185.00333 * 25 3 2 27 27 O 1.42905 * 109.46639 * 304.99639 * 25 3 2 28 28 C 1.52994 * 109.47172 * 64.99739 * 25 3 2 29 29 C 1.53006 * 109.47161 * 175.00404 * 28 25 3 30 30 H 1.08998 * 109.46848 * 60.00213 * 1 2 3 31 31 H 1.08999 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46934 * 300.00260 * 1 2 3 33 33 H 1.09004 * 109.47162 * 239.99577 * 2 1 3 34 34 H 1.09000 * 109.47205 * 120.00186 * 2 1 3 35 35 H 0.96996 * 119.99355 * 95.00437 * 5 3 2 36 36 H 0.97002 * 119.99448 * 354.88349 * 10 8 6 37 37 H 1.08007 * 119.78187 * 359.95471 * 12 11 10 38 38 H 1.08002 * 119.83437 * 179.97438 * 13 12 11 39 39 H 1.07995 * 120.05262 * 179.97438 * 14 13 12 40 40 H 0.96996 * 120.00012 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.16807 * 0.02562 * 24 11 10 42 42 H 0.96701 * 113.99918 * 60.00422 * 27 25 3 43 43 H 1.09000 * 109.47166 * 294.99908 * 28 25 3 44 44 H 1.08996 * 109.47275 * 55.00601 * 28 25 3 45 45 H 1.09004 * 109.47048 * 59.99606 * 29 28 25 46 46 H 1.08998 * 109.47537 * 180.02562 * 29 28 25 47 47 H 1.09005 * 109.46912 * 300.00243 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4331 2.6595 1.3688 7 8 -0.3420 2.6275 0.4355 8 6 0.0357 3.3219 2.6471 9 8 0.8110 3.3544 3.5803 10 7 -1.1838 3.8836 2.7643 11 6 -1.5963 4.4085 3.9919 12 6 -2.4129 5.5371 4.0270 13 6 -2.8277 6.0650 5.2379 14 6 -2.4379 5.4797 6.4218 15 6 -1.6132 4.3394 6.4023 16 6 -1.2084 3.7332 7.6141 17 1 -0.2986 3.1525 7.6499 18 6 -1.9869 3.8858 8.7669 19 7 -3.2264 4.2931 8.6700 20 14 -1.2563 3.5081 10.4440 21 1 -0.0845 4.3885 10.6832 22 1 -2.2780 3.7483 11.4945 23 1 -0.8252 2.0877 10.4877 24 6 -1.1981 3.8038 5.1703 25 6 3.5648 1.4443 -0.1258 26 1 3.9356 2.4655 -0.0366 27 8 4.1293 0.6403 0.9121 28 6 3.9649 0.8735 -1.4877 29 6 5.4803 0.9899 -1.6643 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.2719 2.1231 1.9977 36 1 -1.7752 3.9235 1.9964 37 1 -2.7239 6.0031 3.1036 38 1 -3.4602 6.9403 5.2540 39 1 -2.7637 5.8955 7.3637 40 1 -3.7659 4.3992 9.4690 41 1 -0.5686 2.9267 5.1444 42 1 3.8426 -0.2831 0.8943 43 1 3.6724 -0.1751 -1.5424 44 1 3.4631 1.4324 -2.2775 45 1 5.9821 0.4310 -0.8744 46 1 5.7653 0.5837 -2.6348 47 1 5.7729 2.0386 -1.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454067760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:33 Heat of formation + Delta-G solvation = -112.556154 kcal Electronic energy + Delta-G solvation = -28620.928762 eV Core-core repulsion = 24575.020138 eV Total energy + Delta-G solvation = -4045.908624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84831 -39.45220 -38.23142 -37.12137 -35.27408 -34.47776 -33.26112 -33.02915 -32.36052 -29.86989 -28.81277 -28.33215 -25.39596 -25.03778 -23.94371 -22.62285 -21.27609 -20.85107 -20.67793 -19.72851 -18.45054 -17.59904 -16.93784 -16.62123 -16.27584 -15.85079 -15.58441 -15.47135 -15.08734 -14.80595 -14.64581 -14.44690 -13.97519 -13.67214 -13.32261 -13.06739 -12.92661 -12.86511 -12.60136 -12.38537 -12.21744 -12.09993 -11.87046 -11.71156 -11.45282 -11.34444 -11.27102 -11.12671 -11.05273 -10.99477 -10.88693 -10.51196 -10.41081 -10.10310 -9.69990 -9.44980 -9.27122 -9.09837 -9.00136 -7.49628 -6.99915 -6.74367 -4.36683 1.53542 2.45926 2.77051 2.92907 3.08029 3.11479 3.21154 3.56235 3.79265 3.94868 4.00444 4.20562 4.39067 4.56638 4.62026 4.69327 4.72476 4.81689 4.96653 5.16202 5.27976 5.29048 5.41111 5.49953 5.56699 5.67041 5.75646 5.80472 5.86240 5.89701 6.15394 6.20734 6.25100 6.35543 6.60415 6.84123 6.97966 7.01591 7.12483 7.22096 7.23124 7.45201 7.64891 7.81989 7.90533 8.04377 8.08892 8.16784 8.45543 8.64031 8.89806 8.93997 10.19369 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002498 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.135966 B =11207.110071 C =12133.926373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.099 0.901 5 N -0.694 5.694 6 C 0.512 3.488 7 O -0.521 6.521 8 C 0.494 3.506 9 O -0.498 6.498 10 N -0.634 5.634 11 C 0.145 3.855 12 C -0.255 4.255 13 C -0.092 4.092 14 C -0.168 4.168 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.209 4.209 25 C 0.098 3.902 26 H 0.108 0.892 27 O -0.555 6.555 28 C -0.154 4.154 29 C -0.149 4.149 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.418 0.582 36 H 0.410 0.590 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.281 0.719 41 H 0.106 0.894 42 H 0.375 0.625 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.178 -7.275 -17.343 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.006 3.994 4 H 0.117 0.883 5 N -0.348 5.348 6 C 0.294 3.706 7 O -0.396 6.396 8 C 0.275 3.725 9 O -0.372 6.372 10 N -0.279 5.279 11 C 0.053 3.947 12 C -0.277 4.277 13 C -0.111 4.111 14 C -0.188 4.188 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.230 4.230 25 C 0.039 3.961 26 H 0.125 0.875 27 O -0.361 6.361 28 C -0.192 4.192 29 C -0.206 4.206 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.255 0.745 36 H 0.246 0.754 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.223 0.777 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.264 -6.701 -17.056 21.004 hybrid contribution -0.193 -0.654 0.484 0.836 sum 10.072 -7.355 -16.572 20.740 Atomic orbital electron populations 1.21793 0.94241 1.01024 1.03258 1.22040 0.98009 0.95611 1.02377 1.21875 0.95479 0.94220 0.87825 0.88271 1.45715 1.16072 1.55832 1.17185 1.20280 0.82589 0.79277 0.88490 1.90740 1.50878 1.58045 1.39984 1.19989 0.83214 0.81156 0.88161 1.90826 1.50489 1.56250 1.39603 1.43130 1.15494 1.56179 1.13054 1.17442 0.99438 0.94677 0.83109 1.20064 1.10495 1.00027 0.97079 1.20474 0.99413 0.98589 0.92585 1.21384 1.03361 0.97199 0.96832 1.17475 0.89328 0.89990 0.91567 1.19547 1.07744 1.28535 0.92890 0.90319 1.25911 0.94018 0.92920 1.01365 1.69812 1.06318 1.34259 1.31564 0.86343 0.79750 0.80018 0.80471 1.18767 1.20358 1.18992 1.20966 1.09141 1.02162 0.90725 1.22287 0.90111 0.96327 0.87420 0.87469 1.86626 1.72057 1.24960 1.52414 1.22227 0.97807 1.02034 0.97109 1.21704 0.94986 1.02236 1.01719 0.91981 0.93231 0.92361 0.90626 0.91314 0.74484 0.75423 0.89009 0.88816 0.86181 0.90810 0.87615 0.77680 0.91024 0.90671 0.91910 0.92680 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.51 37.16 0.32 -1.21 16 2 C -0.14 -1.12 4.89 -26.73 -0.13 -1.25 16 3 C 0.11 0.97 2.13 -67.93 -0.14 0.83 16 4 H 0.10 0.94 7.58 -51.93 -0.39 0.54 16 5 N -0.69 -8.16 5.01 -54.27 -0.27 -8.44 16 6 C 0.51 7.55 6.44 -11.63 -0.07 7.48 16 7 O -0.52 -7.97 13.61 5.49 0.07 -7.89 16 8 C 0.49 9.03 7.61 -11.63 -0.09 8.94 16 9 O -0.50 -10.52 14.23 5.47 0.08 -10.45 16 10 N -0.63 -11.95 5.32 -10.34 -0.06 -12.00 16 11 C 0.14 3.30 6.25 -83.82 -0.52 2.78 16 12 C -0.26 -5.65 9.97 -39.09 -0.39 -6.04 16 13 C -0.09 -2.13 10.01 -39.70 -0.40 -2.53 16 14 C -0.17 -4.38 8.69 -38.83 -0.34 -4.71 16 15 C 0.12 3.26 5.57 -106.85 -0.59 2.66 16 16 C -0.46 -12.41 9.05 -37.74 -0.34 -12.76 16 17 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 18 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 19 N -0.79 -20.52 10.94 55.55 0.61 -19.91 16 20 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 24 C -0.21 -5.36 8.39 -38.66 -0.32 -5.68 16 25 C 0.10 0.71 2.86 -26.74 -0.08 0.63 16 26 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 27 O -0.55 -4.44 12.51 -35.23 -0.44 -4.88 16 28 C -0.15 -0.84 5.25 -26.73 -0.14 -0.98 16 29 C -0.15 -0.85 9.81 37.16 0.36 -0.49 16 30 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.77 5.63 -51.93 -0.29 0.48 16 33 H 0.08 0.44 6.45 -51.93 -0.34 0.10 16 34 H 0.07 0.52 7.00 -51.93 -0.36 0.15 16 35 H 0.42 5.05 7.85 -40.82 -0.32 4.73 16 36 H 0.41 6.66 8.30 -40.82 -0.34 6.33 16 37 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.20 6.17 -52.49 -0.32 2.87 16 40 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 41 H 0.11 2.76 6.48 -52.49 -0.34 2.42 16 42 H 0.37 1.99 7.31 45.56 0.33 2.33 16 43 H 0.07 0.32 6.70 -51.93 -0.35 -0.02 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.40 7.82 -51.93 -0.41 -0.01 16 46 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -30.28 381.28 -8.31 -38.59 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -6.04 Total: 15.84 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.97 Total: -10.50 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.28 Total: -40.35 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.29 Total: -23.22 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.28 -8.31 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454067760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.965 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds