Wall clock time and date at job start Tue Mar 31 2020 17:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47365 * 2 1 4 4 H 1.09002 * 109.47256 * 305.00004 * 3 2 1 5 5 N 1.46503 * 109.47127 * 64.99634 * 3 2 1 6 6 C 1.34776 * 120.00043 * 275.27710 * 5 3 2 7 7 O 1.21358 * 120.00315 * 359.72311 * 6 5 3 8 8 C 1.49356 * 119.99862 * 179.72500 * 6 5 3 9 9 O 1.21378 * 119.99899 * 0.02562 * 8 6 5 10 10 N 1.34772 * 120.00330 * 180.02562 * 8 6 5 11 11 C 1.39742 * 120.00459 * 174.89098 * 10 8 6 12 12 C 1.39342 * 119.95712 * 145.76124 * 11 10 8 13 13 C 1.38462 * 120.42559 * 179.97438 * 12 11 10 14 14 C 1.37697 * 120.32974 * 359.97438 * 13 12 11 15 15 C 1.40746 * 119.89512 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.20855 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00136 * 205.17924 * 16 15 14 18 18 C 1.39932 * 119.99687 * 25.18933 * 16 15 14 19 19 N 1.30830 * 120.00104 * 16.78378 * 18 16 15 20 20 Si 1.86796 * 119.99825 * 196.78907 * 18 16 15 21 21 H 1.48504 * 109.47394 * 59.99602 * 20 18 16 22 22 H 1.48501 * 109.47196 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47367 * 299.99441 * 20 18 16 24 24 C 1.38302 * 119.94873 * 325.48383 * 11 10 8 25 25 C 1.52997 * 109.47430 * 185.00253 * 3 2 1 26 26 H 1.09010 * 109.47129 * 185.00333 * 25 3 2 27 27 O 1.42905 * 109.46639 * 304.99639 * 25 3 2 28 28 C 1.52994 * 109.47172 * 64.99739 * 25 3 2 29 29 C 1.53006 * 109.47161 * 175.00404 * 28 25 3 30 30 H 1.08998 * 109.46848 * 60.00213 * 1 2 3 31 31 H 1.08999 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46934 * 300.00260 * 1 2 3 33 33 H 1.09004 * 109.47162 * 239.99577 * 2 1 3 34 34 H 1.09000 * 109.47205 * 120.00186 * 2 1 3 35 35 H 0.96996 * 119.99355 * 95.00437 * 5 3 2 36 36 H 0.97002 * 119.99448 * 354.88349 * 10 8 6 37 37 H 1.08007 * 119.78187 * 359.95471 * 12 11 10 38 38 H 1.08002 * 119.83437 * 179.97438 * 13 12 11 39 39 H 1.07995 * 120.05262 * 179.97438 * 14 13 12 40 40 H 0.96996 * 120.00012 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.16807 * 0.02562 * 24 11 10 42 42 H 0.96701 * 113.99918 * 60.00422 * 27 25 3 43 43 H 1.09000 * 109.47166 * 294.99908 * 28 25 3 44 44 H 1.08996 * 109.47275 * 55.00601 * 28 25 3 45 45 H 1.09004 * 109.47048 * 59.99606 * 29 28 25 46 46 H 1.08998 * 109.47537 * 180.02562 * 29 28 25 47 47 H 1.09005 * 109.46912 * 300.00243 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4331 2.6595 1.3688 7 8 -0.3420 2.6275 0.4355 8 6 0.0357 3.3219 2.6471 9 8 0.8110 3.3544 3.5803 10 7 -1.1838 3.8836 2.7643 11 6 -1.5963 4.4085 3.9919 12 6 -2.4129 5.5371 4.0270 13 6 -2.8277 6.0650 5.2379 14 6 -2.4379 5.4797 6.4218 15 6 -1.6132 4.3394 6.4023 16 6 -1.2084 3.7332 7.6141 17 1 -0.2986 3.1525 7.6499 18 6 -1.9869 3.8858 8.7669 19 7 -3.2264 4.2931 8.6700 20 14 -1.2563 3.5081 10.4440 21 1 -0.0845 4.3885 10.6832 22 1 -2.2780 3.7483 11.4945 23 1 -0.8252 2.0877 10.4877 24 6 -1.1981 3.8038 5.1703 25 6 3.5648 1.4443 -0.1258 26 1 3.9356 2.4655 -0.0366 27 8 4.1293 0.6403 0.9121 28 6 3.9649 0.8735 -1.4877 29 6 5.4803 0.9899 -1.6643 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.2719 2.1231 1.9977 36 1 -1.7752 3.9235 1.9964 37 1 -2.7239 6.0031 3.1036 38 1 -3.4602 6.9403 5.2540 39 1 -2.7637 5.8955 7.3637 40 1 -3.7659 4.3992 9.4690 41 1 -0.5686 2.9267 5.1444 42 1 3.8426 -0.2831 0.8943 43 1 3.6724 -0.1751 -1.5424 44 1 3.4631 1.4324 -2.2775 45 1 5.9821 0.4310 -0.8744 46 1 5.7653 0.5837 -2.6348 47 1 5.7729 2.0386 -1.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454067760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:33 Heat of formation + Delta-G solvation = -134.108681 kcal Electronic energy + Delta-G solvation = -28621.863350 eV Core-core repulsion = 24575.020138 eV Total energy + Delta-G solvation = -4046.843212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11345 -40.66977 -39.31401 -38.80191 -36.55318 -35.83986 -34.84709 -33.81117 -33.18922 -31.79966 -30.33804 -29.34069 -27.31248 -26.23620 -24.79002 -23.50652 -22.90267 -22.42282 -21.50080 -21.14001 -19.91812 -19.21238 -18.02636 -17.58813 -17.49708 -17.11963 -16.84100 -16.59058 -16.50045 -16.37624 -15.75774 -15.56221 -15.33108 -14.92570 -14.70244 -14.38117 -14.15743 -13.97323 -13.62771 -13.56583 -13.21910 -13.08780 -13.03986 -12.95394 -12.87686 -12.74023 -12.67311 -12.51239 -12.20479 -11.95506 -11.88549 -11.67087 -11.61187 -11.55045 -11.19956 -11.04176 -10.93202 -10.58269 -10.20604 -9.44158 -8.85443 -8.64062 -6.38907 0.13917 0.94095 1.03419 1.29958 1.37164 1.48248 1.52946 2.11883 2.20594 2.59066 2.71576 3.33969 3.39866 3.58901 3.69622 3.76051 4.03466 4.11032 4.20782 4.38203 4.42447 4.56585 4.57534 4.64167 4.70397 4.85065 4.89279 4.91708 4.98179 5.04752 5.06695 5.08005 5.10681 5.14995 5.25978 5.28643 5.32548 5.40243 5.44309 5.59280 5.76197 5.97491 6.03296 6.07426 6.26709 6.37650 6.62400 6.72956 6.78919 6.88057 6.94733 7.00602 8.31654 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002498 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.135966 B =11207.110071 C =12133.926373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.110 3.890 4 H 0.098 0.902 5 N -0.681 5.681 6 C 0.523 3.477 7 O -0.525 6.525 8 C 0.491 3.509 9 O -0.530 6.530 10 N -0.629 5.629 11 C 0.150 3.850 12 C -0.247 4.247 13 C -0.089 4.089 14 C -0.193 4.193 15 C 0.090 3.910 16 C -0.499 4.499 17 H 0.067 0.933 18 C 0.038 3.962 19 N -0.820 5.820 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.262 1.262 23 H -0.262 1.262 24 C -0.233 4.233 25 C 0.106 3.894 26 H 0.098 0.902 27 O -0.569 6.569 28 C -0.148 4.148 29 C -0.149 4.149 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.424 0.576 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.290 0.710 41 H 0.089 0.911 42 H 0.387 0.613 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 -7.783 -19.028 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.006 3.994 4 H 0.116 0.884 5 N -0.334 5.334 6 C 0.302 3.698 7 O -0.402 6.402 8 C 0.273 3.727 9 O -0.406 6.406 10 N -0.276 5.276 11 C 0.058 3.942 12 C -0.268 4.268 13 C -0.108 4.108 14 C -0.213 4.213 15 C 0.087 3.913 16 C -0.529 4.529 17 H 0.085 0.915 18 C -0.178 4.178 19 N -0.446 5.446 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.186 1.186 23 H -0.186 1.186 24 C -0.255 4.255 25 C 0.046 3.954 26 H 0.116 0.884 27 O -0.377 6.377 28 C -0.186 4.186 29 C -0.207 4.207 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.237 0.763 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.734 -7.231 -18.800 22.824 hybrid contribution -0.328 -0.502 0.853 1.043 sum 10.406 -7.733 -17.947 22.140 Atomic orbital electron populations 1.21771 0.96110 1.01112 1.01355 1.22045 0.96149 0.95061 1.04237 1.22150 0.96732 0.94548 0.85971 0.88376 1.45787 1.14642 1.54662 1.18277 1.19546 0.83627 0.79764 0.86813 1.90744 1.51248 1.58700 1.39498 1.20721 0.82528 0.80220 0.89202 1.90811 1.51376 1.57165 1.41225 1.43047 1.16170 1.56128 1.12207 1.17518 0.98493 0.94473 0.83747 1.20481 1.08968 0.99115 0.98275 1.20839 0.98869 0.99117 0.91955 1.21365 1.04659 0.97700 0.97568 1.17822 0.90304 0.90876 0.92311 1.19727 1.08315 1.30314 0.94498 0.91487 1.26716 0.94088 0.92304 1.04667 1.69844 1.07215 1.34487 1.33062 0.85260 0.79103 0.79749 0.75635 1.18613 1.18560 1.18650 1.20935 1.10242 1.02527 0.91772 1.22218 0.88538 0.96187 0.88440 0.88369 1.86612 1.72225 1.26008 1.52863 1.22197 0.97597 1.02947 0.95823 1.21700 0.95126 1.01823 1.02016 0.92586 0.92219 0.95455 0.87492 0.90684 0.74609 0.73714 0.85171 0.85617 0.87475 0.89900 0.89297 0.76287 0.89448 0.89879 0.92646 0.91665 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.51 71.98 0.61 -2.24 16 2 C -0.14 -1.82 4.89 30.59 0.15 -1.67 16 3 C 0.11 1.73 2.13 44.99 0.10 1.82 16 4 H 0.10 1.65 7.58 -2.39 -0.02 1.63 16 5 N -0.68 -15.55 5.01 -443.97 -2.22 -17.77 16 6 C 0.52 15.19 6.44 87.24 0.56 15.76 16 7 O -0.52 -15.58 13.61 -3.27 -0.04 -15.62 16 8 C 0.49 18.14 7.61 87.24 0.66 18.80 16 9 O -0.53 -23.16 14.23 -3.33 -0.05 -23.21 16 10 N -0.63 -23.56 5.32 -304.98 -1.62 -25.18 16 11 C 0.15 6.89 6.25 38.16 0.24 7.12 16 12 C -0.25 -10.58 9.97 22.59 0.23 -10.35 16 13 C -0.09 -4.06 10.01 22.20 0.22 -3.84 16 14 C -0.19 -10.32 8.69 22.76 0.20 -10.12 16 15 C 0.09 5.12 5.57 -21.31 -0.12 5.00 16 16 C -0.50 -28.48 9.05 23.46 0.21 -28.27 16 17 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 18 C 0.04 1.95 5.16 85.25 0.44 2.39 16 19 N -0.82 -43.37 10.94 21.82 0.24 -43.13 16 20 Si 0.98 39.46 29.59 68.60 2.03 41.49 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 C -0.23 -12.49 8.39 22.86 0.19 -12.30 16 25 C 0.11 1.33 2.86 30.59 0.09 1.42 16 26 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 27 O -0.57 -8.13 12.51 -148.98 -1.86 -9.99 16 28 C -0.15 -1.20 5.25 30.59 0.16 -1.04 16 29 C -0.15 -1.40 9.81 71.98 0.71 -0.70 16 30 H 0.06 1.15 7.84 -2.39 -0.02 1.13 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.03 0.69 5.63 -2.39 -0.01 0.68 16 33 H 0.11 0.81 6.45 -2.38 -0.02 0.80 16 34 H 0.07 0.94 7.00 -2.39 -0.02 0.93 16 35 H 0.42 9.97 7.85 -92.71 -0.73 9.24 16 36 H 0.42 13.29 8.30 -92.71 -0.77 12.52 16 37 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.11 5.90 6.17 -2.91 -0.02 5.89 16 40 H 0.29 13.77 8.30 -92.71 -0.77 13.01 16 41 H 0.09 4.94 6.48 -2.91 -0.02 4.92 16 42 H 0.39 3.22 7.31 -74.06 -0.54 2.68 16 43 H 0.09 0.46 6.70 -2.39 -0.02 0.44 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.05 0.61 7.82 -2.39 -0.02 0.59 16 46 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -68.47 381.28 0.11 -68.36 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -1.01 Total: 43.28 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.65 Total: -18.23 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -3.61 Total: -86.08 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -1.96 Total: -48.82 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -68.47 0.11 -68.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454067760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.748 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds