Wall clock time and date at job start Tue Mar 31 2020 17:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 H 1.09009 * 109.46618 * 304.99814 * 3 2 1 5 5 O 1.42894 * 109.47384 * 64.99130 * 3 2 1 6 6 C 1.52991 * 109.47326 * 184.99848 * 3 2 1 7 7 H 1.08995 * 109.47278 * 54.99362 * 6 3 2 8 8 C 1.53009 * 109.47132 * 294.99534 * 6 3 2 9 9 C 1.52990 * 109.47213 * 174.99975 * 8 6 3 10 10 N 1.46495 * 109.47499 * 174.99812 * 6 3 2 11 11 C 1.34780 * 120.00209 * 204.99739 * 10 6 3 12 12 O 1.21356 * 120.00124 * 0.02562 * 11 10 6 13 13 C 1.49362 * 119.99940 * 179.97438 * 11 10 6 14 14 O 1.21373 * 119.99956 * 0.02562 * 13 11 10 15 15 N 1.34770 * 119.99988 * 180.02562 * 13 11 10 16 16 C 1.39734 * 120.00241 * 174.89213 * 15 13 11 17 17 C 1.39349 * 119.95626 * 145.76204 * 16 15 13 18 18 C 1.38470 * 120.42340 * 180.02562 * 17 16 15 19 19 C 1.37697 * 120.32958 * 359.96020 * 18 17 16 20 20 C 1.40744 * 119.89342 * 0.02562 * 19 18 17 21 21 C 1.41416 * 120.20377 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00445 * 205.18656 * 21 20 19 23 23 C 1.39935 * 119.99990 * 25.19338 * 21 20 19 24 24 N 1.30834 * 119.99886 * 16.78610 * 23 21 20 25 25 Si 1.86792 * 120.00137 * 196.79111 * 23 21 20 26 26 H 1.48498 * 109.47270 * 59.99537 * 25 23 21 27 27 H 1.48502 * 109.47325 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47197 * 299.99646 * 25 23 21 29 29 C 1.38310 * 119.95347 * 325.49085 * 16 15 13 30 30 H 1.09001 * 109.47894 * 300.00416 * 1 2 3 31 31 H 1.09008 * 109.47233 * 60.00605 * 1 2 3 32 32 H 1.09002 * 109.47387 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47491 * 239.99442 * 2 1 3 34 34 H 1.08998 * 109.46702 * 119.99228 * 2 1 3 35 35 H 0.96706 * 113.99884 * 60.00053 * 5 3 2 36 36 H 1.08995 * 109.46925 * 295.00425 * 8 6 3 37 37 H 1.09004 * 109.46381 * 54.99782 * 8 6 3 38 38 H 1.09002 * 109.46921 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.47347 * 299.99896 * 9 8 6 40 40 H 1.08997 * 109.47707 * 60.00186 * 9 8 6 41 41 H 0.97002 * 120.00073 * 24.99343 * 10 6 3 42 42 H 0.97005 * 119.99831 * 354.89655 * 15 13 11 43 43 H 1.07999 * 119.78430 * 0.02562 * 17 16 15 44 44 H 1.08001 * 119.83139 * 179.97438 * 18 17 16 45 45 H 1.08000 * 120.04529 * 179.97438 * 19 18 17 46 46 H 0.96998 * 119.99797 * 180.02562 * 24 23 21 47 47 H 1.07998 * 120.15910 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6618 2.0815 1.2209 6 6 3.5647 1.4444 -0.1257 7 1 3.8570 0.8801 -1.0111 8 6 4.1797 0.7978 1.1172 9 6 5.6949 0.6865 0.9374 10 7 4.0431 2.8238 -0.2458 11 6 5.2189 3.0789 -0.8533 12 8 5.8811 2.1658 -1.3012 13 6 5.7064 4.4853 -0.9762 14 8 5.0439 5.3985 -0.5287 15 7 6.8819 4.7404 -1.5841 16 6 7.2877 6.0609 -1.7945 17 6 8.6396 6.3922 -1.7289 18 6 9.0524 7.6977 -1.9353 19 6 8.1307 8.6835 -2.2085 20 6 6.7618 8.3640 -2.2781 21 6 5.8094 9.3713 -2.5577 22 1 4.7881 9.2560 -2.2261 23 6 6.1904 10.5176 -3.2643 24 7 7.3077 10.5253 -3.9448 25 14 5.1037 12.0366 -3.2357 26 1 4.9528 12.5111 -1.8367 27 1 5.7263 13.1062 -4.0563 28 1 3.7680 11.7003 -3.7910 29 6 6.3474 7.0362 -2.0730 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5137 0.8901 35 1 2.0139 1.6544 2.0138 36 1 3.9616 1.4111 1.9915 37 1 3.7562 -0.1969 1.2564 38 1 6.1330 0.2254 1.8227 39 1 5.9130 0.0731 0.0631 40 1 6.1184 1.6812 0.7982 41 1 3.5137 3.5537 0.1118 42 1 7.4462 4.0073 -1.8758 43 1 9.3701 5.6257 -1.5159 44 1 10.1027 7.9439 -1.8818 45 1 8.4577 9.7003 -2.3682 46 1 7.5720 11.3200 -4.4343 47 1 5.2998 6.7798 -2.1287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454067762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:36 Heat of formation + Delta-G solvation = -112.625076 kcal Electronic energy + Delta-G solvation = -28597.222095 eV Core-core repulsion = 24551.310483 eV Total energy + Delta-G solvation = -4045.911613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84876 -39.45409 -38.23204 -37.12132 -35.27830 -34.48005 -33.25811 -33.02803 -32.37400 -29.86923 -28.81798 -28.33062 -25.39472 -25.03682 -23.95720 -22.62197 -21.27401 -20.85311 -20.68346 -19.72964 -18.45189 -17.60823 -16.91680 -16.62498 -16.28846 -15.86622 -15.55734 -15.41700 -15.17907 -14.80689 -14.66461 -14.43408 -13.93982 -13.66379 -13.36819 -13.02880 -12.94000 -12.88186 -12.60311 -12.39391 -12.20856 -12.11859 -11.86822 -11.72368 -11.45347 -11.34614 -11.27173 -11.12550 -11.05824 -11.00824 -10.88839 -10.51083 -10.41344 -10.10370 -9.70107 -9.44252 -9.27844 -9.09929 -9.00017 -7.49564 -6.99850 -6.74255 -4.36596 1.53455 2.46089 2.77049 2.92775 3.08172 3.11651 3.21239 3.56291 3.79309 3.95036 4.00422 4.20438 4.38726 4.57243 4.62158 4.68938 4.72397 4.80312 4.96501 5.15743 5.27776 5.29217 5.40461 5.49397 5.57320 5.67097 5.72358 5.80181 5.85934 5.88437 6.13954 6.20676 6.22407 6.35508 6.60402 6.84084 6.97994 7.01634 7.12450 7.21926 7.23144 7.45188 7.64951 7.81936 7.90526 8.04446 8.08876 8.16798 8.45568 8.64106 8.89902 8.94052 10.19487 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002552 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.839070 B =10970.700553 C =12407.158534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.098 3.902 4 H 0.108 0.892 5 O -0.554 6.554 6 C 0.111 3.889 7 H 0.100 0.900 8 C -0.142 4.142 9 C -0.146 4.146 10 N -0.694 5.694 11 C 0.513 3.487 12 O -0.521 6.521 13 C 0.494 3.506 14 O -0.498 6.498 15 N -0.634 5.634 16 C 0.145 3.855 17 C -0.255 4.255 18 C -0.092 4.092 19 C -0.168 4.168 20 C 0.120 3.880 21 C -0.458 4.458 22 H 0.079 0.921 23 C 0.076 3.924 24 N -0.794 5.794 25 Si 0.910 3.090 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.265 1.265 29 C -0.209 4.209 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.374 0.626 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.418 0.582 42 H 0.410 0.590 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.281 0.719 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.846 -18.700 7.466 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.038 3.962 4 H 0.126 0.874 5 O -0.360 6.360 6 C 0.006 3.994 7 H 0.118 0.882 8 C -0.180 4.180 9 C -0.203 4.203 10 N -0.348 5.348 11 C 0.294 3.706 12 O -0.396 6.396 13 C 0.275 3.725 14 O -0.372 6.372 15 N -0.279 5.279 16 C 0.053 3.947 17 C -0.277 4.277 18 C -0.111 4.111 19 C -0.188 4.188 20 C 0.117 3.883 21 C -0.487 4.487 22 H 0.097 0.903 23 C -0.142 4.142 24 N -0.420 5.420 25 Si 0.734 3.266 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.190 1.190 29 C -0.230 4.230 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.222 0.778 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.246 0.754 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.049 -18.171 6.878 21.031 hybrid contribution 0.005 0.202 0.225 0.302 sum -8.044 -17.970 7.103 20.930 Atomic orbital electron populations 1.21704 0.94684 1.01617 1.02655 1.22225 0.97433 0.96240 1.03258 1.22294 0.91464 0.93910 0.88517 0.87404 1.86630 1.76746 1.57136 1.15508 1.21874 0.94277 0.82992 1.00273 0.88242 1.22035 0.97676 1.00699 0.97578 1.21789 0.94411 1.02748 1.01342 1.45714 1.21420 1.09642 1.58031 1.20285 0.82043 0.89669 0.78638 1.90738 1.55806 1.46162 1.46941 1.19987 0.83169 0.88929 0.80430 1.90825 1.55341 1.45637 1.45358 1.43129 1.19782 1.08653 1.56292 1.17445 0.93691 0.81635 1.01903 1.20065 0.92616 0.96846 1.18136 1.20476 0.97663 0.92723 1.00206 1.21385 0.93133 0.98858 1.05393 1.17471 0.92681 0.90564 0.87633 1.19551 0.97252 1.01002 1.30924 0.90315 1.25911 0.95402 0.99910 0.92985 1.69815 1.21521 1.29459 1.21161 0.86341 0.80657 0.80193 0.79389 1.18773 1.20359 1.18983 1.20968 0.97658 0.92528 1.11843 0.91922 0.92574 0.92684 0.90652 0.91059 0.77759 0.91355 0.90611 0.93277 0.91943 0.92421 0.74480 0.75425 0.89014 0.88817 0.86179 0.90813 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.81 37.16 0.36 -0.51 16 2 C -0.15 -0.85 5.25 -26.73 -0.14 -0.99 16 3 C 0.10 0.72 2.86 -26.73 -0.08 0.64 16 4 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16 5 O -0.55 -4.41 12.51 -35.23 -0.44 -4.85 16 6 C 0.11 0.97 2.13 -67.93 -0.14 0.83 16 7 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 8 C -0.14 -1.07 4.89 -26.73 -0.13 -1.20 16 9 C -0.15 -1.45 8.51 37.15 0.32 -1.14 16 10 N -0.69 -8.16 5.00 -54.27 -0.27 -8.43 16 11 C 0.51 7.55 6.45 -11.62 -0.08 7.48 16 12 O -0.52 -7.97 13.62 5.49 0.07 -7.89 16 13 C 0.49 9.03 7.61 -11.63 -0.09 8.94 16 14 O -0.50 -10.52 14.23 5.48 0.08 -10.45 16 15 N -0.63 -11.95 5.32 -10.34 -0.05 -12.01 16 16 C 0.14 3.30 6.25 -83.82 -0.52 2.78 16 17 C -0.26 -5.65 9.97 -39.08 -0.39 -6.04 16 18 C -0.09 -2.13 10.01 -39.69 -0.40 -2.53 16 19 C -0.17 -4.38 8.69 -38.83 -0.34 -4.71 16 20 C 0.12 3.26 5.57 -106.85 -0.59 2.67 16 21 C -0.46 -12.43 9.05 -37.74 -0.34 -12.77 16 22 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 23 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 24 N -0.79 -20.53 10.94 55.55 0.61 -19.92 16 25 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 C -0.21 -5.36 8.39 -38.67 -0.32 -5.69 16 30 H 0.06 0.40 7.82 -51.93 -0.41 0.00 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.32 6.70 -51.93 -0.35 -0.03 16 35 H 0.37 1.92 7.31 45.56 0.33 2.25 16 36 H 0.07 0.48 7.00 -51.93 -0.36 0.12 16 37 H 0.08 0.42 6.45 -51.93 -0.34 0.08 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.66 7.85 -51.93 -0.41 0.26 16 40 H 0.06 0.72 5.65 -51.93 -0.29 0.42 16 41 H 0.42 5.05 7.85 -40.82 -0.32 4.73 16 42 H 0.41 6.66 8.30 -40.82 -0.34 6.33 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.12 3.20 6.17 -52.49 -0.32 2.87 16 46 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 47 H 0.11 2.76 6.48 -52.49 -0.34 2.42 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -30.30 381.32 -8.31 -38.61 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -6.05 Total: 15.70 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.97 Total: -10.41 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.28 Total: -40.36 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.29 Total: -23.19 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.30 -8.31 -38.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454067762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.013 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds