Wall clock time and date at job start Tue Mar 31 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 H 1.09009 * 109.46618 * 304.99814 * 3 2 1 5 5 O 1.42894 * 109.47384 * 64.99130 * 3 2 1 6 6 C 1.52991 * 109.47326 * 184.99848 * 3 2 1 7 7 H 1.08995 * 109.47278 * 54.99362 * 6 3 2 8 8 C 1.53009 * 109.47132 * 294.99534 * 6 3 2 9 9 C 1.52990 * 109.47213 * 174.99975 * 8 6 3 10 10 N 1.46495 * 109.47499 * 174.99812 * 6 3 2 11 11 C 1.34780 * 120.00209 * 204.99739 * 10 6 3 12 12 O 1.21356 * 120.00124 * 0.02562 * 11 10 6 13 13 C 1.49362 * 119.99940 * 179.97438 * 11 10 6 14 14 O 1.21373 * 119.99956 * 0.02562 * 13 11 10 15 15 N 1.34770 * 119.99988 * 180.02562 * 13 11 10 16 16 C 1.39734 * 120.00241 * 174.89213 * 15 13 11 17 17 C 1.39349 * 119.95626 * 145.76204 * 16 15 13 18 18 C 1.38470 * 120.42340 * 180.02562 * 17 16 15 19 19 C 1.37697 * 120.32958 * 359.96020 * 18 17 16 20 20 C 1.40744 * 119.89342 * 0.02562 * 19 18 17 21 21 C 1.41416 * 120.20377 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00445 * 205.18656 * 21 20 19 23 23 C 1.39935 * 119.99990 * 25.19338 * 21 20 19 24 24 N 1.30834 * 119.99886 * 16.78610 * 23 21 20 25 25 Si 1.86792 * 120.00137 * 196.79111 * 23 21 20 26 26 H 1.48498 * 109.47270 * 59.99537 * 25 23 21 27 27 H 1.48502 * 109.47325 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47197 * 299.99646 * 25 23 21 29 29 C 1.38310 * 119.95347 * 325.49085 * 16 15 13 30 30 H 1.09001 * 109.47894 * 300.00416 * 1 2 3 31 31 H 1.09008 * 109.47233 * 60.00605 * 1 2 3 32 32 H 1.09002 * 109.47387 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47491 * 239.99442 * 2 1 3 34 34 H 1.08998 * 109.46702 * 119.99228 * 2 1 3 35 35 H 0.96706 * 113.99884 * 60.00053 * 5 3 2 36 36 H 1.08995 * 109.46925 * 295.00425 * 8 6 3 37 37 H 1.09004 * 109.46381 * 54.99782 * 8 6 3 38 38 H 1.09002 * 109.46921 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.47347 * 299.99896 * 9 8 6 40 40 H 1.08997 * 109.47707 * 60.00186 * 9 8 6 41 41 H 0.97002 * 120.00073 * 24.99343 * 10 6 3 42 42 H 0.97005 * 119.99831 * 354.89655 * 15 13 11 43 43 H 1.07999 * 119.78430 * 0.02562 * 17 16 15 44 44 H 1.08001 * 119.83139 * 179.97438 * 18 17 16 45 45 H 1.08000 * 120.04529 * 179.97438 * 19 18 17 46 46 H 0.96998 * 119.99797 * 180.02562 * 24 23 21 47 47 H 1.07998 * 120.15910 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6618 2.0815 1.2209 6 6 3.5647 1.4444 -0.1257 7 1 3.8570 0.8801 -1.0111 8 6 4.1797 0.7978 1.1172 9 6 5.6949 0.6865 0.9374 10 7 4.0431 2.8238 -0.2458 11 6 5.2189 3.0789 -0.8533 12 8 5.8811 2.1658 -1.3012 13 6 5.7064 4.4853 -0.9762 14 8 5.0439 5.3985 -0.5287 15 7 6.8819 4.7404 -1.5841 16 6 7.2877 6.0609 -1.7945 17 6 8.6396 6.3922 -1.7289 18 6 9.0524 7.6977 -1.9353 19 6 8.1307 8.6835 -2.2085 20 6 6.7618 8.3640 -2.2781 21 6 5.8094 9.3713 -2.5577 22 1 4.7881 9.2560 -2.2261 23 6 6.1904 10.5176 -3.2643 24 7 7.3077 10.5253 -3.9448 25 14 5.1037 12.0366 -3.2357 26 1 4.9528 12.5111 -1.8367 27 1 5.7263 13.1062 -4.0563 28 1 3.7680 11.7003 -3.7910 29 6 6.3474 7.0362 -2.0730 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5137 0.8901 35 1 2.0139 1.6544 2.0138 36 1 3.9616 1.4111 1.9915 37 1 3.7562 -0.1969 1.2564 38 1 6.1330 0.2254 1.8227 39 1 5.9130 0.0731 0.0631 40 1 6.1184 1.6812 0.7982 41 1 3.5137 3.5537 0.1118 42 1 7.4462 4.0073 -1.8758 43 1 9.3701 5.6257 -1.5159 44 1 10.1027 7.9439 -1.8818 45 1 8.4577 9.7003 -2.3682 46 1 7.5720 11.3200 -4.4343 47 1 5.2998 6.7798 -2.1287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454067762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:35 Heat of formation + Delta-G solvation = -134.197585 kcal Electronic energy + Delta-G solvation = -28598.157550 eV Core-core repulsion = 24551.310483 eV Total energy + Delta-G solvation = -4046.847067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11347 -40.67048 -39.31662 -38.80318 -36.55390 -35.84039 -34.84680 -33.81403 -33.18317 -31.79947 -30.33874 -29.33828 -27.31232 -26.23814 -24.78531 -23.50431 -22.90311 -22.42498 -21.50148 -21.14205 -19.91872 -19.21499 -18.02300 -17.62700 -17.37346 -17.25080 -16.76450 -16.58697 -16.47566 -16.42973 -15.81816 -15.56723 -15.23869 -14.97955 -14.67854 -14.37497 -14.12320 -14.02570 -13.60097 -13.58014 -13.21909 -13.07136 -13.05464 -12.95405 -12.87776 -12.73648 -12.67215 -12.50103 -12.20443 -11.95924 -11.88263 -11.67299 -11.61266 -11.54805 -11.20001 -11.04504 -10.92932 -10.58523 -10.20399 -9.44138 -8.85418 -8.64056 -6.38934 0.13781 0.94152 1.03686 1.29613 1.37188 1.48251 1.52890 2.11809 2.20639 2.59035 2.71549 3.33890 3.39878 3.58322 3.69674 3.76084 4.03292 4.11724 4.20762 4.38750 4.42437 4.56976 4.57496 4.64568 4.70517 4.85067 4.89361 4.92050 4.99189 5.04739 5.06695 5.08503 5.10673 5.14484 5.26293 5.28737 5.32293 5.41800 5.43695 5.59264 5.76192 5.97428 6.03258 6.07407 6.26715 6.37584 6.62412 6.73094 6.79509 6.88042 6.94746 7.00567 8.31659 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002552 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.839070 B =10970.700553 C =12407.158534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.105 3.895 4 H 0.095 0.905 5 O -0.568 6.568 6 C 0.109 3.891 7 H 0.096 0.904 8 C -0.136 4.136 9 C -0.146 4.146 10 N -0.681 5.681 11 C 0.523 3.477 12 O -0.525 6.525 13 C 0.491 3.509 14 O -0.530 6.530 15 N -0.629 5.629 16 C 0.150 3.850 17 C -0.247 4.247 18 C -0.089 4.089 19 C -0.193 4.193 20 C 0.090 3.910 21 C -0.500 4.500 22 H 0.067 0.933 23 C 0.038 3.962 24 N -0.820 5.820 25 Si 0.982 3.018 26 H -0.262 1.262 27 H -0.262 1.262 28 H -0.262 1.262 29 C -0.233 4.233 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.387 0.613 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.029 0.971 41 H 0.417 0.583 42 H 0.424 0.576 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.290 0.710 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 -20.491 8.303 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.045 3.955 4 H 0.113 0.887 5 O -0.376 6.376 6 C 0.005 3.995 7 H 0.114 0.886 8 C -0.174 4.174 9 C -0.203 4.203 10 N -0.334 5.334 11 C 0.302 3.698 12 O -0.402 6.402 13 C 0.273 3.727 14 O -0.406 6.406 15 N -0.275 5.275 16 C 0.058 3.942 17 C -0.268 4.268 18 C -0.108 4.108 19 C -0.213 4.213 20 C 0.087 3.913 21 C -0.529 4.529 22 H 0.085 0.915 23 C -0.178 4.178 24 N -0.446 5.446 25 Si 0.802 3.198 26 H -0.186 1.186 27 H -0.186 1.186 28 H -0.187 1.187 29 C -0.255 4.255 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.238 0.762 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.254 0.746 42 H 0.263 0.737 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.107 -20.027 7.727 22.946 hybrid contribution 0.052 0.606 0.018 0.609 sum -8.055 -19.421 7.745 22.406 Atomic orbital electron populations 1.21702 0.94954 1.02083 1.01957 1.22193 0.97077 0.94792 1.04457 1.22204 0.90047 0.95080 0.88123 0.88687 1.86616 1.76949 1.57852 1.16209 1.22148 0.95385 0.80935 1.00988 0.88618 1.22036 0.96036 1.02380 0.96929 1.21768 0.96041 1.00933 1.01583 1.45787 1.20000 1.11195 1.56388 1.19552 0.83037 0.87583 0.79586 1.90744 1.56260 1.45453 1.47746 1.20717 0.82354 0.90426 0.79164 1.90810 1.56037 1.47234 1.46485 1.43044 1.20481 1.07581 1.56442 1.17519 0.93730 0.82789 1.00187 1.20482 0.92921 0.97363 1.16059 1.20841 0.98825 0.92580 0.98529 1.21366 0.93273 0.99163 1.07481 1.17815 0.93634 0.91367 0.88467 1.19731 0.97038 1.02998 1.33124 0.91493 1.26715 0.96911 1.02277 0.91854 1.69847 1.22811 1.30636 1.21314 0.85261 0.78687 0.76280 0.79524 1.18609 1.18556 1.18664 1.20938 0.97526 0.93128 1.13912 0.92553 0.93392 0.91626 0.90011 0.89255 0.76242 0.90466 0.87569 0.92003 0.92795 0.95210 0.74605 0.73714 0.85179 0.85612 0.87472 0.89902 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.81 71.98 0.71 -0.77 16 2 C -0.15 -1.25 5.25 30.59 0.16 -1.09 16 3 C 0.11 1.36 2.86 30.59 0.09 1.45 16 4 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 5 O -0.57 -8.06 12.51 -148.98 -1.86 -9.92 16 6 C 0.11 1.73 2.13 44.99 0.10 1.82 16 7 H 0.10 1.66 7.58 -2.39 -0.02 1.64 16 8 C -0.14 -1.69 4.89 30.59 0.15 -1.54 16 9 C -0.15 -2.64 8.51 71.98 0.61 -2.02 16 10 N -0.68 -15.57 5.00 -443.97 -2.22 -17.79 16 11 C 0.52 15.20 6.45 87.24 0.56 15.76 16 12 O -0.53 -15.60 13.62 -3.26 -0.04 -15.64 16 13 C 0.49 18.14 7.61 87.24 0.66 18.80 16 14 O -0.53 -23.15 14.23 -3.32 -0.05 -23.20 16 15 N -0.63 -23.55 5.32 -304.98 -1.62 -25.18 16 16 C 0.15 6.89 6.25 38.17 0.24 7.13 16 17 C -0.25 -10.56 9.97 22.59 0.23 -10.34 16 18 C -0.09 -4.06 10.01 22.20 0.22 -3.84 16 19 C -0.19 -10.31 8.69 22.75 0.20 -10.12 16 20 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 21 C -0.50 -28.53 9.05 23.46 0.21 -28.31 16 22 H 0.07 3.81 7.90 -2.91 -0.02 3.78 16 23 C 0.04 1.96 5.16 85.25 0.44 2.40 16 24 N -0.82 -43.39 10.94 21.82 0.24 -43.15 16 25 Si 0.98 39.51 29.59 68.60 2.03 41.54 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 28 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 29 C -0.23 -12.51 8.39 22.86 0.19 -12.32 16 30 H 0.06 0.63 7.82 -2.39 -0.02 0.61 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.46 6.70 -2.39 -0.02 0.44 16 35 H 0.39 2.99 7.31 -74.05 -0.54 2.45 16 36 H 0.08 0.86 7.00 -2.39 -0.02 0.85 16 37 H 0.11 0.74 6.45 -2.39 -0.02 0.72 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 1.05 7.85 -2.38 -0.02 1.04 16 40 H 0.03 0.70 5.65 -2.39 -0.01 0.68 16 41 H 0.42 9.98 7.85 -92.71 -0.73 9.25 16 42 H 0.42 13.29 8.30 -92.70 -0.77 12.52 16 43 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 44 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 45 H 0.11 5.91 6.17 -2.91 -0.02 5.89 16 46 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 47 H 0.09 4.94 6.48 -2.91 -0.02 4.92 16 Total: -1.00 -68.53 381.32 0.11 -68.42 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -1.01 Total: 42.89 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.65 Total: -17.97 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -3.61 Total: -86.12 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -1.96 Total: -48.76 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -68.53 0.11 -68.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454067762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.776 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds