Wall clock time and date at job start Tue Mar 31 2020 17:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47167 * 2 1 4 4 H 1.09003 * 109.46720 * 304.99540 * 3 2 1 5 5 O 1.42897 * 109.47093 * 65.00068 * 3 2 1 6 6 C 1.53004 * 109.46940 * 184.99856 * 3 2 1 7 7 H 1.09001 * 109.46734 * 65.00119 * 6 3 2 8 8 C 1.52995 * 109.46742 * 184.99673 * 6 3 2 9 9 C 1.53008 * 109.47175 * 185.00162 * 8 6 3 10 10 N 1.46494 * 109.47250 * 305.00056 * 6 3 2 11 11 C 1.34777 * 120.00117 * 155.00443 * 10 6 3 12 12 O 1.21360 * 120.00104 * 359.97438 * 11 10 6 13 13 C 1.49357 * 120.00268 * 179.97438 * 11 10 6 14 14 O 1.21380 * 119.99704 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00226 * 180.27119 * 13 11 10 16 16 C 1.39742 * 120.00078 * 174.61510 * 15 13 11 17 17 C 1.39344 * 119.95243 * 145.75886 * 16 15 13 18 18 C 1.38473 * 120.42310 * 180.02562 * 17 16 15 19 19 C 1.37697 * 120.32451 * 359.97438 * 18 17 16 20 20 C 1.40747 * 119.90228 * 0.02562 * 19 18 17 21 21 C 1.41403 * 120.20781 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99669 * 205.18337 * 21 20 19 23 23 C 1.39933 * 120.00324 * 25.18301 * 21 20 19 24 24 N 1.30832 * 119.99724 * 16.80117 * 23 21 20 25 25 Si 1.86798 * 120.00014 * 196.80210 * 23 21 20 26 26 H 1.48498 * 109.47392 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47026 * 119.99961 * 25 23 21 28 28 H 1.48497 * 109.47121 * 239.99853 * 25 23 21 29 29 C 1.38306 * 119.95084 * 325.48471 * 16 15 13 30 30 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47578 * 300.00057 * 1 2 3 32 32 H 1.08996 * 109.47536 * 60.00285 * 1 2 3 33 33 H 1.08995 * 109.47415 * 239.99560 * 2 1 3 34 34 H 1.09003 * 109.47133 * 119.99657 * 2 1 3 35 35 H 0.96699 * 113.99969 * 60.00080 * 5 3 2 36 36 H 1.09003 * 109.47518 * 304.99790 * 8 6 3 37 37 H 1.08995 * 109.47376 * 65.00500 * 8 6 3 38 38 H 1.08996 * 109.46991 * 180.02562 * 9 8 6 39 39 H 1.09003 * 109.46594 * 300.00194 * 9 8 6 40 40 H 1.08995 * 109.46692 * 59.99919 * 9 8 6 41 41 H 0.97000 * 119.99767 * 334.99478 * 10 6 3 42 42 H 0.96994 * 119.99812 * 354.61848 * 15 13 11 43 43 H 1.07999 * 119.78799 * 359.97438 * 17 16 15 44 44 H 1.07993 * 119.83339 * 180.02562 * 18 17 16 45 45 H 1.08001 * 120.04707 * 179.97438 * 19 18 17 46 46 H 0.96999 * 119.99770 * 180.02562 * 24 23 21 47 47 H 1.07999 * 120.16568 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4443 -0.1257 7 1 3.8498 1.0377 -1.0960 8 6 4.0851 2.8776 -0.0007 9 6 5.5945 2.8959 -0.2502 10 7 4.1435 0.6201 0.9382 11 6 5.3564 0.0571 0.7703 12 8 5.9691 0.2325 -0.2625 13 6 5.9467 -0.7827 1.8552 14 8 5.3337 -0.9585 2.8880 15 7 7.1620 -1.3412 1.6895 16 6 7.7631 -2.0325 2.7447 17 6 8.5605 -3.1448 2.4831 18 6 9.1604 -3.8374 3.5214 19 6 8.9756 -3.4335 4.8248 20 6 8.1729 -2.3118 5.1046 21 6 7.9783 -1.8917 6.4407 22 1 7.0935 -1.3327 6.7076 23 6 8.9319 -2.2003 7.4172 24 7 10.1341 -2.5748 7.0621 25 14 8.4885 -2.0773 9.2276 26 1 7.0772 -1.6357 9.3627 27 1 8.6543 -3.4064 9.8692 28 1 9.3813 -1.0930 9.8902 29 6 7.5703 -1.6082 4.0469 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0141 1.6542 2.0138 36 1 3.5877 3.5102 -0.7359 37 1 3.8780 3.2533 1.0013 38 1 5.9652 3.9170 -0.1607 39 1 6.0920 2.2633 0.4850 40 1 5.8016 2.5203 -1.2522 41 1 3.6537 0.4798 1.7636 42 1 7.6194 -1.2633 0.8377 43 1 8.7110 -3.4694 1.4641 44 1 9.7769 -4.6979 3.3077 45 1 9.4453 -3.9772 5.6311 46 1 10.7951 -2.7891 7.7389 47 1 6.9557 -0.7438 4.2507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454067763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:39 Heat of formation + Delta-G solvation = -112.128634 kcal Electronic energy + Delta-G solvation = -28864.485653 eV Core-core repulsion = 24818.595568 eV Total energy + Delta-G solvation = -4045.890086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93828 -39.45469 -38.17167 -37.16651 -35.28065 -34.52258 -33.11777 -33.09876 -32.45119 -29.90076 -28.80571 -28.36549 -25.41876 -24.98559 -24.20197 -21.77618 -21.58841 -20.99432 -20.70683 -19.94268 -18.59334 -17.65992 -17.12501 -16.62490 -16.00540 -15.81023 -15.59921 -15.29787 -15.17424 -14.82334 -14.66213 -14.40618 -14.04321 -13.63215 -13.33832 -13.07250 -12.93830 -12.90066 -12.67166 -12.37960 -12.24989 -11.87157 -11.79831 -11.68925 -11.44254 -11.31786 -11.29611 -11.21421 -11.15860 -10.97703 -10.91337 -10.49920 -10.29084 -10.13875 -9.73413 -9.49448 -9.31772 -9.13841 -9.05245 -7.52632 -7.03518 -6.77308 -4.39551 1.47417 2.39662 2.72252 2.88922 3.07401 3.13318 3.16393 3.50913 3.76494 3.88579 3.93064 4.21128 4.46304 4.59029 4.63706 4.66274 4.87627 4.92460 5.06369 5.23011 5.30897 5.38390 5.46432 5.63916 5.66607 5.68922 5.80322 5.84562 5.94306 5.96856 6.13859 6.17713 6.29827 6.32268 6.55532 6.77771 6.94579 6.97964 7.02755 7.18796 7.20302 7.39010 7.61314 7.74105 7.87138 8.00965 8.04967 8.12474 8.40888 8.61145 8.87005 8.90969 10.16559 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.002693 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.644573 B =10393.066283 C =11082.478661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.160 4.160 3 C 0.101 3.899 4 H 0.114 0.886 5 O -0.554 6.554 6 C 0.110 3.890 7 H 0.100 0.900 8 C -0.128 4.128 9 C -0.148 4.148 10 N -0.699 5.699 11 C 0.515 3.485 12 O -0.515 6.515 13 C 0.495 3.505 14 O -0.500 6.500 15 N -0.632 5.632 16 C 0.144 3.856 17 C -0.255 4.255 18 C -0.091 4.091 19 C -0.168 4.168 20 C 0.120 3.880 21 C -0.457 4.457 22 H 0.079 0.921 23 C 0.075 3.925 24 N -0.794 5.794 25 Si 0.909 3.091 26 H -0.260 1.260 27 H -0.272 1.272 28 H -0.275 1.275 29 C -0.208 4.208 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.374 0.626 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.408 0.592 42 H 0.410 0.590 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.280 0.720 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 6.527 -12.566 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.042 3.958 4 H 0.132 0.868 5 O -0.359 6.359 6 C 0.005 3.995 7 H 0.118 0.882 8 C -0.167 4.167 9 C -0.206 4.206 10 N -0.354 5.354 11 C 0.296 3.704 12 O -0.390 6.390 13 C 0.275 3.725 14 O -0.375 6.375 15 N -0.277 5.277 16 C 0.053 3.947 17 C -0.276 4.276 18 C -0.111 4.111 19 C -0.188 4.188 20 C 0.116 3.884 21 C -0.487 4.487 22 H 0.098 0.902 23 C -0.142 4.142 24 N -0.419 5.419 25 Si 0.733 3.267 26 H -0.183 1.183 27 H -0.197 1.197 28 H -0.200 1.200 29 C -0.229 4.229 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.222 0.778 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.245 0.755 42 H 0.246 0.754 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.643 6.908 -12.899 19.338 hybrid contribution 0.340 -0.408 1.050 1.176 sum -12.303 6.500 -11.849 18.277 Atomic orbital electron populations 1.21695 0.94796 1.01713 1.02330 1.22254 0.97310 0.96692 1.03483 1.22333 0.91246 0.93596 0.88669 0.86849 1.86606 1.76764 1.56987 1.15536 1.21966 0.93386 0.91700 0.92405 0.88212 1.21853 0.96896 0.94916 1.03012 1.21841 0.95058 1.00994 1.02658 1.45721 1.18769 1.50367 1.20532 1.20245 0.82049 0.80433 0.87703 1.90753 1.60048 1.60023 1.28205 1.19984 0.82774 0.81963 0.87761 1.90815 1.60033 1.58688 1.27924 1.43132 1.17058 1.51520 1.16009 1.17442 0.97445 0.93284 0.86567 1.20068 1.09888 0.99971 0.97702 1.20479 0.98990 0.98339 0.93244 1.21393 1.03916 0.98412 0.95032 1.17477 0.89060 0.89478 0.92345 1.19610 1.05580 1.31164 0.92317 0.90246 1.25915 0.93998 0.92588 1.01730 1.69829 1.02787 1.33072 1.36199 0.86254 0.80064 0.78725 0.81665 1.18324 1.19683 1.19994 1.20958 1.09144 1.02554 0.90286 0.92680 0.91954 0.92788 0.90813 0.91133 0.77795 0.90936 0.90982 0.93287 0.92585 0.92157 0.75517 0.75387 0.89001 0.88801 0.86176 0.90896 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.81 37.15 0.36 -0.66 16 2 C -0.16 -1.15 5.30 -26.73 -0.14 -1.29 16 3 C 0.10 0.72 2.83 -26.73 -0.08 0.65 16 4 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 5 O -0.55 -4.43 12.10 -35.23 -0.43 -4.86 16 6 C 0.11 0.95 2.16 -67.93 -0.15 0.81 16 7 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16 8 C -0.13 -1.16 5.33 -26.73 -0.14 -1.30 16 9 C -0.15 -1.63 8.52 37.16 0.32 -1.32 16 10 N -0.70 -7.35 4.31 -54.27 -0.23 -7.58 16 11 C 0.51 7.16 6.45 -11.63 -0.08 7.08 16 12 O -0.52 -7.65 13.62 5.49 0.07 -7.57 16 13 C 0.49 8.60 7.61 -11.63 -0.09 8.51 16 14 O -0.50 -9.98 14.23 5.47 0.08 -9.90 16 15 N -0.63 -11.56 5.32 -10.34 -0.05 -11.61 16 16 C 0.14 3.21 6.25 -83.82 -0.52 2.68 16 17 C -0.26 -5.54 9.97 -39.08 -0.39 -5.93 16 18 C -0.09 -2.09 10.02 -39.69 -0.40 -2.49 16 19 C -0.17 -4.31 8.69 -38.83 -0.34 -4.65 16 20 C 0.12 3.20 5.57 -106.85 -0.59 2.61 16 21 C -0.46 -12.21 9.05 -37.74 -0.34 -12.56 16 22 H 0.08 2.08 7.90 -52.48 -0.41 1.67 16 23 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 24 N -0.79 -20.27 10.94 55.55 0.61 -19.67 16 25 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 29 C -0.21 -5.23 8.39 -38.66 -0.32 -5.55 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.56 7.31 -51.93 -0.38 0.18 16 35 H 0.37 2.34 7.81 45.56 0.36 2.70 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.69 7.73 -51.93 -0.40 0.28 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.74 5.65 -51.93 -0.29 0.45 16 40 H 0.06 0.69 7.85 -51.93 -0.41 0.28 16 41 H 0.41 3.94 6.40 -40.82 -0.26 3.68 16 42 H 0.41 6.48 8.30 -40.82 -0.34 6.14 16 43 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 46 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 47 H 0.11 2.68 6.48 -52.49 -0.34 2.34 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -29.66 382.76 -8.32 -37.98 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -6.12 Total: 15.45 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.99 Total: -11.62 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.32 Total: -38.86 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.27 Total: -22.33 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.66 -8.32 -37.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454067763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.147 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds