Wall clock time and date at job start Tue Mar 31 2020 17:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47167 * 2 1 4 4 H 1.09003 * 109.46720 * 304.99540 * 3 2 1 5 5 O 1.42897 * 109.47093 * 65.00068 * 3 2 1 6 6 C 1.53004 * 109.46940 * 184.99856 * 3 2 1 7 7 H 1.09001 * 109.46734 * 65.00119 * 6 3 2 8 8 C 1.52995 * 109.46742 * 184.99673 * 6 3 2 9 9 C 1.53008 * 109.47175 * 185.00162 * 8 6 3 10 10 N 1.46494 * 109.47250 * 305.00056 * 6 3 2 11 11 C 1.34777 * 120.00117 * 155.00443 * 10 6 3 12 12 O 1.21360 * 120.00104 * 359.97438 * 11 10 6 13 13 C 1.49357 * 120.00268 * 179.97438 * 11 10 6 14 14 O 1.21380 * 119.99704 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00226 * 180.27119 * 13 11 10 16 16 C 1.39742 * 120.00078 * 174.61510 * 15 13 11 17 17 C 1.39344 * 119.95243 * 145.75886 * 16 15 13 18 18 C 1.38473 * 120.42310 * 180.02562 * 17 16 15 19 19 C 1.37697 * 120.32451 * 359.97438 * 18 17 16 20 20 C 1.40747 * 119.90228 * 0.02562 * 19 18 17 21 21 C 1.41403 * 120.20781 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99669 * 205.18337 * 21 20 19 23 23 C 1.39933 * 120.00324 * 25.18301 * 21 20 19 24 24 N 1.30832 * 119.99724 * 16.80117 * 23 21 20 25 25 Si 1.86798 * 120.00014 * 196.80210 * 23 21 20 26 26 H 1.48498 * 109.47392 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47026 * 119.99961 * 25 23 21 28 28 H 1.48497 * 109.47121 * 239.99853 * 25 23 21 29 29 C 1.38306 * 119.95084 * 325.48471 * 16 15 13 30 30 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47578 * 300.00057 * 1 2 3 32 32 H 1.08996 * 109.47536 * 60.00285 * 1 2 3 33 33 H 1.08995 * 109.47415 * 239.99560 * 2 1 3 34 34 H 1.09003 * 109.47133 * 119.99657 * 2 1 3 35 35 H 0.96699 * 113.99969 * 60.00080 * 5 3 2 36 36 H 1.09003 * 109.47518 * 304.99790 * 8 6 3 37 37 H 1.08995 * 109.47376 * 65.00500 * 8 6 3 38 38 H 1.08996 * 109.46991 * 180.02562 * 9 8 6 39 39 H 1.09003 * 109.46594 * 300.00194 * 9 8 6 40 40 H 1.08995 * 109.46692 * 59.99919 * 9 8 6 41 41 H 0.97000 * 119.99767 * 334.99478 * 10 6 3 42 42 H 0.96994 * 119.99812 * 354.61848 * 15 13 11 43 43 H 1.07999 * 119.78799 * 359.97438 * 17 16 15 44 44 H 1.07993 * 119.83339 * 180.02562 * 18 17 16 45 45 H 1.08001 * 120.04707 * 179.97438 * 19 18 17 46 46 H 0.96999 * 119.99770 * 180.02562 * 24 23 21 47 47 H 1.07999 * 120.16568 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4443 -0.1257 7 1 3.8498 1.0377 -1.0960 8 6 4.0851 2.8776 -0.0007 9 6 5.5945 2.8959 -0.2502 10 7 4.1435 0.6201 0.9382 11 6 5.3564 0.0571 0.7703 12 8 5.9691 0.2325 -0.2625 13 6 5.9467 -0.7827 1.8552 14 8 5.3337 -0.9585 2.8880 15 7 7.1620 -1.3412 1.6895 16 6 7.7631 -2.0325 2.7447 17 6 8.5605 -3.1448 2.4831 18 6 9.1604 -3.8374 3.5214 19 6 8.9756 -3.4335 4.8248 20 6 8.1729 -2.3118 5.1046 21 6 7.9783 -1.8917 6.4407 22 1 7.0935 -1.3327 6.7076 23 6 8.9319 -2.2003 7.4172 24 7 10.1341 -2.5748 7.0621 25 14 8.4885 -2.0773 9.2276 26 1 7.0772 -1.6357 9.3627 27 1 8.6543 -3.4064 9.8692 28 1 9.3813 -1.0930 9.8902 29 6 7.5703 -1.6082 4.0469 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0141 1.6542 2.0138 36 1 3.5877 3.5102 -0.7359 37 1 3.8780 3.2533 1.0013 38 1 5.9652 3.9170 -0.1607 39 1 6.0920 2.2633 0.4850 40 1 5.8016 2.5203 -1.2522 41 1 3.6537 0.4798 1.7636 42 1 7.6194 -1.2633 0.8377 43 1 8.7110 -3.4694 1.4641 44 1 9.7769 -4.6979 3.3077 45 1 9.4453 -3.9772 5.6311 46 1 10.7951 -2.7891 7.7389 47 1 6.9557 -0.7438 4.2507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454067763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:38 Heat of formation + Delta-G solvation = -132.366443 kcal Electronic energy + Delta-G solvation = -28865.363230 eV Core-core repulsion = 24818.595568 eV Total energy + Delta-G solvation = -4046.767663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14483 -40.68517 -39.24295 -38.78664 -36.52671 -35.84537 -34.84730 -33.70908 -33.38458 -31.79521 -30.32550 -29.35865 -27.30827 -26.18819 -25.04648 -23.20811 -22.74352 -22.28766 -21.66678 -21.34084 -20.01421 -19.27011 -18.16337 -17.60381 -17.48917 -17.07309 -16.87816 -16.49445 -16.42996 -16.06766 -15.79733 -15.69176 -15.34194 -14.92032 -14.70501 -14.28882 -14.22474 -13.96577 -13.68617 -13.57138 -13.30779 -13.09990 -13.07502 -12.99302 -12.86778 -12.70565 -12.57252 -12.43625 -12.19087 -11.95607 -11.88322 -11.85261 -11.69650 -11.54510 -11.18334 -10.97232 -10.93646 -10.60698 -10.21166 -9.43491 -8.84867 -8.63912 -6.38482 0.13987 0.93589 1.03490 1.28578 1.38032 1.49372 1.53463 2.12180 2.21087 2.57530 2.71744 3.27520 3.33168 3.57609 3.70227 3.81785 4.04516 4.19053 4.20586 4.37794 4.42856 4.57869 4.58837 4.61020 4.72663 4.81531 4.89941 4.91845 4.97993 5.05315 5.07340 5.10940 5.11965 5.13475 5.20395 5.28013 5.32020 5.40053 5.43169 5.58912 5.76529 5.94374 6.03842 6.07365 6.27047 6.36047 6.62371 6.65049 6.74647 6.88287 6.95079 7.00812 8.32066 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.002693 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.644573 B =10393.066283 C =11082.478661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.158 4.158 3 C 0.111 3.889 4 H 0.131 0.869 5 O -0.563 6.563 6 C 0.112 3.888 7 H 0.101 0.899 8 C -0.124 4.124 9 C -0.147 4.147 10 N -0.682 5.682 11 C 0.525 3.475 12 O -0.523 6.523 13 C 0.492 3.508 14 O -0.528 6.528 15 N -0.630 5.630 16 C 0.151 3.849 17 C -0.248 4.248 18 C -0.089 4.089 19 C -0.194 4.194 20 C 0.091 3.909 21 C -0.498 4.498 22 H 0.068 0.932 23 C 0.038 3.962 24 N -0.821 5.821 25 Si 0.982 3.018 26 H -0.262 1.262 27 H -0.260 1.260 28 H -0.264 1.264 29 C -0.231 4.231 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.381 0.619 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.029 0.971 40 H 0.055 0.945 41 H 0.413 0.587 42 H 0.424 0.576 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.290 0.710 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.429 6.856 -13.938 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.052 3.948 4 H 0.149 0.851 5 O -0.369 6.369 6 C 0.008 3.992 7 H 0.119 0.881 8 C -0.163 4.163 9 C -0.204 4.204 10 N -0.336 5.336 11 C 0.305 3.695 12 O -0.399 6.399 13 C 0.274 3.726 14 O -0.404 6.404 15 N -0.276 5.276 16 C 0.058 3.942 17 C -0.269 4.269 18 C -0.108 4.108 19 C -0.213 4.213 20 C 0.088 3.912 21 C -0.528 4.528 22 H 0.086 0.914 23 C -0.178 4.178 24 N -0.447 5.447 25 Si 0.802 3.198 26 H -0.186 1.186 27 H -0.185 1.185 28 H -0.188 1.188 29 C -0.253 4.253 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.251 0.749 42 H 0.263 0.737 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.100 0.900 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.545 7.255 -14.310 20.997 hybrid contribution 0.582 -0.484 1.325 1.526 sum -12.963 6.771 -12.985 19.557 Atomic orbital electron populations 1.21674 0.94419 1.01775 1.02476 1.22240 0.97608 0.96636 1.03144 1.22332 0.89745 0.93763 0.88993 0.85145 1.86597 1.76878 1.57363 1.16066 1.22149 0.94406 0.91093 0.91504 0.88137 1.21838 0.95648 0.95264 1.03504 1.21809 0.96312 1.00765 1.01514 1.45710 1.17370 1.49292 1.21237 1.19523 0.82967 0.80521 0.86482 1.90760 1.60522 1.60580 1.28033 1.20676 0.82248 0.81388 0.88238 1.90805 1.60715 1.59443 1.29436 1.43050 1.17517 1.51407 1.15622 1.17502 0.96744 0.93322 0.86612 1.20481 1.08257 0.98856 0.99261 1.20833 0.98627 0.99029 0.92332 1.21368 1.05083 0.98776 0.96122 1.17808 0.90026 0.90340 0.93030 1.19782 1.06244 1.33155 0.93582 0.91413 1.26712 0.93440 0.91688 1.05917 1.69860 1.03536 1.33314 1.37999 0.85170 0.79533 0.79274 0.75801 1.18623 1.18474 1.18845 1.20931 1.10021 1.02720 0.91612 0.92716 0.92544 0.91876 0.90555 0.92092 0.77074 0.88799 0.91296 0.92649 0.95139 0.92547 0.74925 0.73747 0.85239 0.85740 0.87571 0.89961 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.81 71.98 0.71 -1.06 16 2 C -0.16 -2.00 5.30 30.59 0.16 -1.84 16 3 C 0.11 1.33 2.83 30.60 0.09 1.41 16 4 H 0.13 1.20 8.14 -2.39 -0.02 1.19 16 5 O -0.56 -7.91 12.10 -148.98 -1.80 -9.71 16 6 C 0.11 1.72 2.16 44.99 0.10 1.82 16 7 H 0.10 1.63 7.58 -2.39 -0.02 1.61 16 8 C -0.12 -1.99 5.33 30.60 0.16 -1.83 16 9 C -0.15 -3.05 8.52 71.98 0.61 -2.44 16 10 N -0.68 -13.61 4.31 -443.97 -1.91 -15.52 16 11 C 0.53 14.19 6.45 87.24 0.56 14.75 16 12 O -0.52 -14.87 13.62 -3.28 -0.04 -14.91 16 13 C 0.49 17.11 7.61 87.24 0.66 17.77 16 14 O -0.53 -21.53 14.23 -3.34 -0.05 -21.58 16 15 N -0.63 -22.66 5.32 -304.97 -1.62 -24.28 16 16 C 0.15 6.71 6.25 38.16 0.24 6.95 16 17 C -0.25 -10.36 9.97 22.59 0.23 -10.13 16 18 C -0.09 -4.02 10.02 22.20 0.22 -3.80 16 19 C -0.19 -10.20 8.69 22.76 0.20 -10.00 16 20 C 0.09 5.08 5.57 -21.31 -0.12 4.96 16 21 C -0.50 -27.95 9.05 23.46 0.21 -27.74 16 22 H 0.07 3.79 7.90 -2.91 -0.02 3.76 16 23 C 0.04 1.93 5.16 85.25 0.44 2.36 16 24 N -0.82 -42.98 10.94 21.82 0.24 -42.74 16 25 Si 0.98 38.91 29.59 68.60 2.03 40.94 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 28 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 29 C -0.23 -12.06 8.39 22.86 0.19 -11.86 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.75 7.82 -2.39 -0.02 0.73 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.89 7.31 -2.39 -0.02 0.87 16 35 H 0.38 4.24 7.81 -74.06 -0.58 3.66 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.18 7.73 -2.39 -0.02 1.16 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.03 0.78 5.65 -2.39 -0.01 0.77 16 40 H 0.06 1.20 7.85 -2.39 -0.02 1.18 16 41 H 0.41 7.67 6.40 -92.71 -0.59 7.07 16 42 H 0.42 12.80 8.30 -92.71 -0.77 12.03 16 43 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 44 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 45 H 0.11 5.79 6.17 -2.91 -0.02 5.77 16 46 H 0.29 13.55 8.30 -92.71 -0.77 12.79 16 47 H 0.09 4.87 6.48 -2.91 -0.02 4.85 16 Total: -1.00 -66.07 382.76 0.59 -65.48 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -0.92 Total: 42.98 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 4.66 Total: -20.67 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -3.29 Total: -82.54 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -1.89 Total: -46.20 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -66.07 0.59 -65.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454067763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.884 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds