Wall clock time and date at job start Tue Mar 31 2020 18:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46787 * 2 1 4 4 N 1.46507 * 109.46708 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99555 * 179.97438 * 4 3 2 6 6 O 1.21550 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.47866 * 119.99643 * 179.97438 * 5 4 3 8 8 C 1.39721 * 120.07149 * 359.97438 * 7 5 4 9 9 C 1.38070 * 120.15630 * 180.02562 * 8 7 5 10 10 C 1.38084 * 120.30664 * 359.77532 * 9 8 7 11 11 C 1.39730 * 120.13354 * 0.47731 * 10 9 8 12 12 C 1.47744 * 120.08014 * 179.78246 * 11 10 9 13 13 O 1.21588 * 120.00236 * 220.47796 * 12 11 10 14 14 N 1.34781 * 119.99635 * 40.47106 * 12 11 10 15 15 C 1.36872 * 120.00128 * 357.79547 * 14 12 11 16 16 H 1.07998 * 119.99695 * 52.76811 * 15 14 12 17 17 C 1.39042 * 120.00282 * 232.76416 * 15 14 12 18 18 N 1.31364 * 120.00174 * 202.11260 * 17 15 14 19 19 Si 1.86806 * 120.00059 * 22.11160 * 17 15 14 20 20 H 1.48497 * 109.47184 * 94.56789 * 19 17 15 21 21 H 1.48496 * 109.46996 * 214.57025 * 19 17 15 22 22 H 1.48509 * 109.46847 * 334.56840 * 19 17 15 23 23 C 1.46504 * 119.99576 * 177.79902 * 14 12 11 24 24 C 1.52996 * 109.46828 * 269.90801 * 23 14 12 25 25 O 1.42893 * 109.47425 * 65.53821 * 24 23 14 26 26 C 1.42898 * 114.00199 * 179.97438 * 25 24 23 27 27 C 1.39275 * 120.06715 * 180.02562 * 7 5 4 28 28 H 1.09007 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47429 * 300.00018 * 1 2 3 30 30 H 1.08998 * 109.47575 * 60.00042 * 1 2 3 31 31 H 1.08997 * 109.47429 * 239.99982 * 2 1 3 32 32 H 1.09005 * 109.46965 * 119.99772 * 2 1 3 33 33 H 1.09002 * 109.47383 * 60.00248 * 3 2 1 34 34 H 1.08991 * 109.47316 * 299.99663 * 3 2 1 35 35 H 0.97000 * 120.00448 * 0.02562 * 4 3 2 36 36 H 1.07993 * 119.92123 * 0.02562 * 8 7 5 37 37 H 1.08003 * 119.84634 * 180.02562 * 9 8 7 38 38 H 1.07989 * 119.92986 * 180.23525 * 10 9 8 39 39 H 0.96997 * 120.00361 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47209 * 29.90751 * 23 14 12 41 41 H 1.09004 * 109.46678 * 149.91181 * 23 14 12 42 42 H 1.09005 * 109.46967 * 185.54287 * 24 23 14 43 43 H 1.09005 * 109.47327 * 305.53547 * 24 23 14 44 44 H 1.09004 * 109.46825 * 60.00510 * 26 25 24 45 45 H 1.09005 * 109.47048 * 180.02562 * 26 25 24 46 46 H 1.08995 * 109.47237 * 300.00390 * 26 25 24 47 47 H 1.08003 * 120.15511 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1787 2.6098 0.0002 6 8 3.5709 3.6624 -0.0002 7 6 5.6574 2.6098 0.0014 8 6 6.3575 1.4006 0.0035 9 6 7.7382 1.3986 0.0052 10 6 8.4368 2.5897 0.0001 11 6 7.7493 3.8061 0.0033 12 6 8.4979 5.0799 0.0027 13 8 8.1174 6.0091 0.6883 14 7 9.6029 5.2117 -0.7578 15 6 10.0571 4.1513 -1.4946 16 1 9.3878 3.6345 -2.1664 17 6 11.3800 3.7396 -1.3781 18 7 11.9407 3.0496 -2.3451 19 14 12.3602 4.1679 0.1534 20 1 12.2865 3.0422 1.1191 21 1 13.7775 4.4098 -0.2176 22 1 11.7955 5.3921 0.7762 23 6 10.3178 6.4899 -0.7956 24 6 9.7524 7.3571 -1.9221 25 8 8.3983 7.7024 -1.6237 26 6 7.7735 8.5167 -2.6180 27 6 6.3552 3.8151 0.0015 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.9900 0.6025 0.0006 36 1 5.8174 0.4655 0.0038 37 1 8.2743 0.4610 0.0064 38 1 9.5166 2.5810 -0.0024 39 1 12.8637 2.7627 -2.2641 40 1 10.1925 7.0046 0.1570 41 1 11.3777 6.3082 -0.9739 42 1 10.3473 8.2659 -2.0145 43 1 9.7878 6.8029 -2.8601 44 1 7.7678 7.9868 -3.5705 45 1 6.7488 8.7352 -2.3172 46 1 8.3273 9.4494 -2.7243 47 1 5.8188 4.7526 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457199031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:51 Heat of formation + Delta-G solvation = -85.446886 kcal Electronic energy + Delta-G solvation = -29026.043574 eV Core-core repulsion = 24981.310496 eV Total energy + Delta-G solvation = -4044.733078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.04689 -39.11658 -37.60924 -36.81624 -35.85245 -34.87951 -32.90776 -32.13833 -31.03037 -30.57272 -29.06896 -26.51880 -25.83936 -25.01017 -23.46960 -23.12121 -21.92473 -21.53172 -20.46556 -19.24339 -18.05791 -16.74906 -16.19524 -16.10114 -15.91389 -15.80901 -15.53964 -15.48489 -14.75915 -14.59458 -14.45163 -14.36585 -14.03058 -13.62486 -13.42813 -13.33469 -13.10679 -12.75683 -12.55657 -12.42887 -12.31761 -12.10303 -11.92918 -11.64078 -11.47322 -11.32303 -11.17899 -11.16891 -11.10729 -10.78538 -10.49876 -10.44521 -10.05230 -9.77241 -9.28133 -9.13600 -9.07137 -8.66831 -8.50449 -8.38549 -7.61209 -6.58747 -4.27844 1.23238 1.66061 3.02099 3.08540 3.16267 3.16663 3.24394 3.79286 4.05276 4.26555 4.37355 4.50890 4.55003 4.67746 4.84279 4.86246 4.98113 5.16033 5.32685 5.33677 5.34918 5.49732 5.59685 5.69735 5.70377 5.75384 5.83079 5.86824 5.88442 5.90700 5.92963 5.96598 6.02452 6.03233 6.26661 6.31833 6.36801 6.40039 6.59856 6.67998 6.86834 7.05627 7.28798 7.38505 7.52791 7.76893 8.06380 8.22957 8.32376 8.89621 9.27047 9.68867 10.50087 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.003283 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.006452 B = 8527.773957 C = 9952.144313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.119 3.881 4 N -0.734 5.734 5 C 0.565 3.435 6 O -0.539 6.539 7 C -0.163 4.163 8 C -0.079 4.079 9 C -0.147 4.147 10 C -0.024 4.024 11 C -0.102 4.102 12 C 0.534 3.466 13 O -0.567 6.567 14 N -0.461 5.461 15 C -0.349 4.349 16 H 0.098 0.902 17 C 0.075 3.925 18 N -0.851 5.851 19 Si 0.851 3.149 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.252 1.252 23 C 0.117 3.883 24 C 0.049 3.951 25 O -0.369 6.369 26 C 0.033 3.967 27 C -0.017 4.017 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.276 0.724 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.031 0.969 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 -6.136 1.657 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.387 5.387 5 C 0.354 3.646 6 O -0.416 6.416 7 C -0.166 4.166 8 C -0.098 4.098 9 C -0.165 4.165 10 C -0.043 4.043 11 C -0.104 4.104 12 C 0.323 3.677 13 O -0.449 6.449 14 N -0.183 5.183 15 C -0.476 4.476 16 H 0.115 0.885 17 C -0.134 4.134 18 N -0.485 5.485 19 Si 0.676 3.324 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.175 1.175 23 C -0.007 4.007 24 C -0.028 4.028 25 O -0.287 6.287 26 C -0.064 4.064 27 C -0.037 4.037 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.520 -5.051 2.062 12.746 hybrid contribution 1.144 -0.359 0.099 1.203 sum -10.376 -5.409 2.161 11.899 Atomic orbital electron populations 1.21675 0.94607 1.02059 1.02372 1.21744 0.96945 0.95975 1.02776 1.21379 0.79651 0.96967 1.02497 1.45909 1.07134 1.08769 1.76884 1.18364 0.87432 0.83383 0.75461 1.90761 1.70051 1.31220 1.49597 1.19580 0.91891 0.94476 1.10688 1.21220 0.94757 0.96047 0.97791 1.21055 0.93516 0.98595 1.03320 1.22088 1.02262 0.90604 0.89302 1.19961 0.92989 0.94746 1.02752 1.18353 0.82798 0.86484 0.80104 1.90677 1.69701 1.41133 1.43400 1.43337 1.24623 1.09575 1.40725 1.18919 0.96594 1.09666 1.22434 0.88495 1.25534 0.96689 0.94943 0.96225 1.69777 1.13617 1.35371 1.29689 0.87231 0.79782 0.80743 0.84669 1.19718 1.20562 1.17541 1.21666 0.95342 0.85642 0.98032 1.22987 0.83054 0.97026 0.99764 1.88110 1.26151 1.70042 1.44434 1.22645 0.98020 0.93552 0.92196 1.21244 0.92707 0.97595 0.92142 0.92245 0.92349 0.92323 0.91240 0.91278 0.91509 0.91493 0.76526 0.86452 0.85503 0.83029 0.91375 0.90646 0.90224 0.93974 0.92524 0.94682 0.90325 0.95005 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.15 0.37 -0.53 16 2 C -0.14 -0.93 6.05 -26.73 -0.16 -1.09 16 3 C 0.12 1.19 5.67 -4.04 -0.02 1.17 16 4 N -0.73 -8.56 5.51 -61.24 -0.34 -8.90 16 5 C 0.56 9.20 7.77 -12.32 -0.10 9.11 16 6 O -0.54 -10.74 16.34 5.32 0.09 -10.65 16 7 C -0.16 -2.77 5.87 -105.02 -0.62 -3.38 16 8 C -0.08 -1.12 9.54 -39.09 -0.37 -1.49 16 9 C -0.15 -2.29 10.02 -39.70 -0.40 -2.69 16 10 C -0.02 -0.47 8.15 -39.08 -0.32 -0.78 16 11 C -0.10 -2.18 5.35 -105.02 -0.56 -2.74 16 12 C 0.53 12.89 6.91 -12.37 -0.09 12.81 16 13 O -0.57 -14.93 15.84 1.01 0.02 -14.91 16 14 N -0.46 -10.89 1.82 -115.92 -0.21 -11.10 16 15 C -0.35 -8.49 6.37 -15.00 -0.10 -8.59 16 16 H 0.10 2.57 7.62 -52.49 -0.40 2.17 16 17 C 0.08 1.82 4.77 -17.45 -0.08 1.74 16 18 N -0.85 -21.71 13.95 55.50 0.77 -20.94 16 19 Si 0.85 18.60 26.45 -169.99 -4.50 14.10 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.25 -5.51 5.76 56.52 0.33 -5.19 16 23 C 0.12 2.53 4.11 -4.04 -0.02 2.51 16 24 C 0.05 0.97 6.28 37.16 0.23 1.20 16 25 O -0.37 -7.72 9.61 -39.51 -0.38 -8.10 16 26 C 0.03 0.53 11.01 101.05 1.11 1.64 16 27 C -0.02 -0.34 9.19 -38.76 -0.36 -0.70 16 28 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 3.54 6.50 -40.82 -0.27 3.28 16 36 H 0.12 1.16 6.39 -52.49 -0.34 0.83 16 37 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 38 H 0.15 3.16 5.80 -52.49 -0.30 2.86 16 39 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 40 H 0.08 1.68 7.39 -51.93 -0.38 1.29 16 41 H 0.08 1.65 5.39 -51.93 -0.28 1.37 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.14 2.95 7.64 -52.48 -0.40 2.55 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -31.55 387.24 -7.26 -38.81 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.08 Total: 7.69 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -1.47 Total: 8.17 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.23 Total: -40.94 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.28 Total: -33.67 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.50 Total: 14.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.55 -7.26 -38.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457199031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.637 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds