Wall clock time and date at job start Tue Mar 31 2020 18:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46787 * 2 1 4 4 N 1.46507 * 109.46708 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99555 * 179.97438 * 4 3 2 6 6 O 1.21550 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.47866 * 119.99643 * 179.97438 * 5 4 3 8 8 C 1.39721 * 120.07149 * 359.97438 * 7 5 4 9 9 C 1.38070 * 120.15630 * 180.02562 * 8 7 5 10 10 C 1.38084 * 120.30664 * 359.77532 * 9 8 7 11 11 C 1.39730 * 120.13354 * 0.47731 * 10 9 8 12 12 C 1.47744 * 120.08014 * 179.78246 * 11 10 9 13 13 O 1.21588 * 120.00236 * 220.47796 * 12 11 10 14 14 N 1.34781 * 119.99635 * 40.47106 * 12 11 10 15 15 C 1.36872 * 120.00128 * 357.79547 * 14 12 11 16 16 H 1.07998 * 119.99695 * 52.76811 * 15 14 12 17 17 C 1.39042 * 120.00282 * 232.76416 * 15 14 12 18 18 N 1.31364 * 120.00174 * 202.11260 * 17 15 14 19 19 Si 1.86806 * 120.00059 * 22.11160 * 17 15 14 20 20 H 1.48497 * 109.47184 * 94.56789 * 19 17 15 21 21 H 1.48496 * 109.46996 * 214.57025 * 19 17 15 22 22 H 1.48509 * 109.46847 * 334.56840 * 19 17 15 23 23 C 1.46504 * 119.99576 * 177.79902 * 14 12 11 24 24 C 1.52996 * 109.46828 * 269.90801 * 23 14 12 25 25 O 1.42893 * 109.47425 * 65.53821 * 24 23 14 26 26 C 1.42898 * 114.00199 * 179.97438 * 25 24 23 27 27 C 1.39275 * 120.06715 * 180.02562 * 7 5 4 28 28 H 1.09007 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47429 * 300.00018 * 1 2 3 30 30 H 1.08998 * 109.47575 * 60.00042 * 1 2 3 31 31 H 1.08997 * 109.47429 * 239.99982 * 2 1 3 32 32 H 1.09005 * 109.46965 * 119.99772 * 2 1 3 33 33 H 1.09002 * 109.47383 * 60.00248 * 3 2 1 34 34 H 1.08991 * 109.47316 * 299.99663 * 3 2 1 35 35 H 0.97000 * 120.00448 * 0.02562 * 4 3 2 36 36 H 1.07993 * 119.92123 * 0.02562 * 8 7 5 37 37 H 1.08003 * 119.84634 * 180.02562 * 9 8 7 38 38 H 1.07989 * 119.92986 * 180.23525 * 10 9 8 39 39 H 0.96997 * 120.00361 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47209 * 29.90751 * 23 14 12 41 41 H 1.09004 * 109.46678 * 149.91181 * 23 14 12 42 42 H 1.09005 * 109.46967 * 185.54287 * 24 23 14 43 43 H 1.09005 * 109.47327 * 305.53547 * 24 23 14 44 44 H 1.09004 * 109.46825 * 60.00510 * 26 25 24 45 45 H 1.09005 * 109.47048 * 180.02562 * 26 25 24 46 46 H 1.08995 * 109.47237 * 300.00390 * 26 25 24 47 47 H 1.08003 * 120.15511 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1787 2.6098 0.0002 6 8 3.5709 3.6624 -0.0002 7 6 5.6574 2.6098 0.0014 8 6 6.3575 1.4006 0.0035 9 6 7.7382 1.3986 0.0052 10 6 8.4368 2.5897 0.0001 11 6 7.7493 3.8061 0.0033 12 6 8.4979 5.0799 0.0027 13 8 8.1174 6.0091 0.6883 14 7 9.6029 5.2117 -0.7578 15 6 10.0571 4.1513 -1.4946 16 1 9.3878 3.6345 -2.1664 17 6 11.3800 3.7396 -1.3781 18 7 11.9407 3.0496 -2.3451 19 14 12.3602 4.1679 0.1534 20 1 12.2865 3.0422 1.1191 21 1 13.7775 4.4098 -0.2176 22 1 11.7955 5.3921 0.7762 23 6 10.3178 6.4899 -0.7956 24 6 9.7524 7.3571 -1.9221 25 8 8.3983 7.7024 -1.6237 26 6 7.7735 8.5167 -2.6180 27 6 6.3552 3.8151 0.0015 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.9900 0.6025 0.0006 36 1 5.8174 0.4655 0.0038 37 1 8.2743 0.4610 0.0064 38 1 9.5166 2.5810 -0.0024 39 1 12.8637 2.7627 -2.2641 40 1 10.1925 7.0046 0.1570 41 1 11.3777 6.3082 -0.9739 42 1 10.3473 8.2659 -2.0145 43 1 9.7878 6.8029 -2.8601 44 1 7.7678 7.9868 -3.5705 45 1 6.7488 8.7352 -2.3172 46 1 8.3273 9.4494 -2.7243 47 1 5.8188 4.7526 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457199031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:50 Heat of formation + Delta-G solvation = -106.404110 kcal Electronic energy + Delta-G solvation = -29026.952347 eV Core-core repulsion = 24981.310496 eV Total energy + Delta-G solvation = -4045.641852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46874 -40.71144 -39.06206 -38.38326 -36.83273 -36.74338 -34.03991 -33.86847 -32.40051 -31.98532 -30.63583 -27.45672 -27.17712 -26.89542 -24.98901 -24.41175 -23.19336 -22.53476 -21.84314 -20.89445 -19.59429 -18.34186 -17.72017 -17.56806 -17.30749 -17.09665 -16.85311 -16.76067 -16.40290 -16.11696 -15.93744 -15.59402 -15.44002 -15.08022 -14.95925 -14.70965 -14.39901 -14.13833 -13.80972 -13.73183 -13.54123 -13.40267 -13.18193 -12.94181 -12.91099 -12.73864 -12.66044 -12.33642 -12.26740 -12.01253 -12.00040 -11.82924 -11.72743 -11.14805 -11.10526 -10.62714 -10.47047 -10.26709 -9.92455 -9.80819 -9.49820 -8.49747 -6.21367 -0.15344 0.19420 1.25870 1.37144 1.47744 1.70577 2.02826 2.15691 2.23619 2.58099 2.81872 2.94908 3.11086 3.69066 3.87207 3.96909 3.98560 4.10201 4.17504 4.21662 4.27856 4.35637 4.37285 4.41699 4.48999 4.51264 4.54565 4.60693 4.68325 4.75698 4.77292 4.83282 4.91015 4.93965 4.97457 5.17454 5.23977 5.27205 5.31168 5.45083 5.47690 5.51722 5.57538 5.90540 6.15095 6.25152 6.35025 6.48756 6.98549 7.15148 7.37722 7.82156 8.62439 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.003283 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.006452 B = 8527.773957 C = 9952.144313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.709 5.709 5 C 0.562 3.438 6 O -0.585 6.585 7 C -0.163 4.163 8 C -0.051 4.051 9 C -0.134 4.134 10 C -0.038 4.038 11 C -0.130 4.130 12 C 0.523 3.477 13 O -0.601 6.601 14 N -0.464 5.464 15 C -0.340 4.340 16 H 0.069 0.931 17 C 0.054 3.946 18 N -0.881 5.881 19 Si 0.898 3.102 20 H -0.267 1.267 21 H -0.271 1.271 22 H -0.258 1.258 23 C 0.109 3.891 24 C 0.055 3.945 25 O -0.406 6.406 26 C 0.028 3.972 27 C -0.037 4.037 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.134 0.866 39 H 0.282 0.718 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 -8.891 1.808 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.362 5.362 5 C 0.351 3.649 6 O -0.466 6.466 7 C -0.166 4.166 8 C -0.069 4.069 9 C -0.152 4.152 10 C -0.057 4.057 11 C -0.133 4.133 12 C 0.314 3.686 13 O -0.486 6.486 14 N -0.185 5.185 15 C -0.467 4.467 16 H 0.086 0.914 17 C -0.153 4.153 18 N -0.516 5.516 19 Si 0.721 3.279 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.182 1.182 23 C -0.014 4.014 24 C -0.022 4.022 25 O -0.325 6.325 26 C -0.068 4.068 27 C -0.057 4.057 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.256 0.744 36 H 0.193 0.807 37 H 0.184 0.816 38 H 0.152 0.848 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.927 -7.858 2.197 14.451 hybrid contribution 1.148 0.451 0.017 1.233 sum -10.779 -7.407 2.214 13.265 Atomic orbital electron populations 1.21695 0.94094 1.02903 1.02154 1.21704 0.97259 0.93395 1.04025 1.21555 0.78345 0.99393 1.01597 1.45757 1.07941 1.07982 1.74501 1.18340 0.87156 0.84022 0.75416 1.90745 1.70689 1.33200 1.51985 1.19741 0.92560 0.94387 1.09948 1.21728 0.94299 0.96911 0.93966 1.21459 0.94252 0.98434 1.01046 1.21994 1.01572 0.91393 0.90701 1.19835 0.93365 0.94400 1.05731 1.18890 0.82938 0.87261 0.79517 1.90624 1.70537 1.42620 1.44811 1.43441 1.24685 1.10079 1.40308 1.18557 0.96288 1.10173 1.21732 0.91377 1.25828 0.97022 0.94746 0.97665 1.69812 1.14349 1.36524 1.30890 0.86509 0.78960 0.80363 0.82057 1.19186 1.19582 1.18199 1.21799 0.95818 0.85276 0.98535 1.22910 0.83312 0.98022 0.97985 1.88063 1.26847 1.71201 1.46414 1.22847 0.98517 0.94109 0.91359 1.21062 0.92350 0.98054 0.94227 0.90825 0.92597 0.92662 0.90018 0.89902 0.92446 0.92568 0.74418 0.80702 0.81597 0.84831 0.90765 0.91671 0.89466 0.90400 0.93558 0.94183 0.89669 0.92246 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.30 6.05 30.59 0.19 -1.11 16 3 C 0.11 2.08 5.67 86.38 0.49 2.57 16 4 N -0.71 -14.61 5.51 -465.94 -2.57 -17.18 16 5 C 0.56 17.88 7.77 86.79 0.67 18.55 16 6 O -0.58 -24.00 16.34 -3.87 -0.06 -24.06 16 7 C -0.16 -5.39 5.87 -20.12 -0.12 -5.51 16 8 C -0.05 -1.24 9.54 22.59 0.22 -1.03 16 9 C -0.13 -3.79 10.02 22.19 0.22 -3.57 16 10 C -0.04 -1.47 8.15 22.59 0.18 -1.29 16 11 C -0.13 -5.84 5.35 -20.12 -0.11 -5.95 16 12 C 0.52 26.66 6.91 86.76 0.60 27.26 16 13 O -0.60 -33.57 15.84 0.10 0.00 -33.57 16 14 N -0.46 -22.75 1.82 -638.92 -1.16 -23.91 16 15 C -0.34 -17.04 6.37 84.10 0.54 -16.51 16 16 H 0.07 3.78 7.62 -2.91 -0.02 3.76 16 17 C 0.05 2.65 4.77 84.96 0.41 3.06 16 18 N -0.88 -44.94 13.95 21.68 0.30 -44.64 16 19 Si 0.90 38.27 26.45 68.60 1.81 40.08 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.26 -11.20 5.76 99.48 0.57 -10.63 16 23 C 0.11 4.82 4.11 86.38 0.35 5.18 16 24 C 0.06 2.18 6.28 71.98 0.45 2.63 16 25 O -0.41 -17.42 9.61 -144.89 -1.39 -18.81 16 26 C 0.03 0.89 11.01 113.37 1.25 2.14 16 27 C -0.04 -1.56 9.19 22.80 0.21 -1.35 16 28 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 5.39 6.50 -92.71 -0.60 4.79 16 36 H 0.18 2.28 6.39 -2.91 -0.02 2.26 16 37 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 38 H 0.13 5.64 5.80 -2.92 -0.02 5.63 16 39 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 40 H 0.06 3.00 7.39 -2.39 -0.02 2.98 16 41 H 0.09 3.65 5.39 -2.39 -0.01 3.64 16 42 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.11 5.01 7.64 -2.91 -0.02 4.99 16 Total: -1.00 -73.72 387.24 3.45 -70.27 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.25 Total: 27.47 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 6.26 Total: 24.35 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -3.42 Total: -85.72 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -1.45 Total: -76.44 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.81 Total: 40.08 kcal Total: -73.72 3.45 -70.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457199031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.134 kcal (2) G-P(sol) polarization free energy of solvation -73.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds