Wall clock time and date at job start Tue Mar 31 2020 17:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46920 * 2 1 4 4 H 1.08993 * 109.50503 * 304.91723 * 3 2 1 5 5 C 1.53094 * 109.50532 * 184.78244 * 3 2 1 6 6 N 1.47014 * 109.29450 * 183.24140 * 5 3 2 7 7 C 1.46898 * 111.03763 * 182.34845 * 6 5 3 8 8 C 1.52991 * 109.47292 * 302.38390 * 7 6 5 9 9 N 1.46497 * 109.47196 * 179.97438 * 8 7 6 10 10 S 1.65601 * 120.00296 * 165.00415 * 9 8 7 11 11 O 1.42098 * 104.28043 * 181.06973 * 10 9 8 12 12 O 1.42100 * 104.27367 * 308.92983 * 10 9 8 13 13 C 1.81406 * 104.45056 * 64.99708 * 10 9 8 14 14 C 1.52996 * 109.46908 * 180.02562 * 13 10 9 15 15 C 1.53009 * 109.46845 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46926 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99800 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47230 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47032 * 120.00260 * 20 18 16 23 23 H 1.48503 * 109.47153 * 240.00053 * 20 18 16 24 24 C 1.47018 * 110.75310 * 58.54598 * 6 5 3 25 25 C 1.53095 * 109.29409 * 301.45410 * 24 6 5 26 26 O 1.43015 * 109.50687 * 64.99991 * 3 2 1 27 27 H 1.09007 * 109.47394 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47417 * 299.99720 * 1 2 3 29 29 H 1.08998 * 109.47284 * 59.99811 * 1 2 3 30 30 H 1.08993 * 109.47144 * 240.00242 * 2 1 3 31 31 H 1.08999 * 109.46835 * 119.99904 * 2 1 3 32 32 H 1.09006 * 109.50944 * 303.15050 * 5 3 2 33 33 H 1.08996 * 109.51243 * 63.23829 * 5 3 2 34 34 H 1.08999 * 109.47135 * 62.39066 * 7 6 5 35 35 H 1.09004 * 109.46940 * 182.38160 * 7 6 5 36 36 H 1.08999 * 109.47582 * 300.00401 * 8 7 6 37 37 H 1.09005 * 109.46792 * 60.00034 * 8 7 6 38 38 H 0.97004 * 120.00156 * 344.99641 * 9 8 7 39 39 H 1.09005 * 109.47070 * 300.00192 * 13 10 9 40 40 H 1.08998 * 109.46918 * 59.99989 * 13 10 9 41 41 H 1.09005 * 109.46958 * 299.99705 * 14 13 10 42 42 H 1.08998 * 109.47794 * 59.99969 * 14 13 10 43 43 H 1.08997 * 109.47195 * 299.99780 * 15 14 13 44 44 H 1.09006 * 109.46940 * 59.99720 * 15 14 13 45 45 H 0.97007 * 119.99812 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.50864 * 181.49645 * 24 6 5 47 47 H 1.09003 * 109.50425 * 61.41284 * 24 6 5 48 48 H 1.08994 * 109.50879 * 176.75852 * 25 24 6 49 49 H 1.09001 * 109.51139 * 296.84757 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6068 1.9817 -0.8424 5 6 3.5661 1.4452 -0.1203 6 7 4.0572 2.8287 -0.0417 7 6 5.5157 2.8808 -0.2091 8 6 6.1830 2.0117 0.8586 9 7 7.6375 2.0632 0.6914 10 16 8.6300 1.5327 1.9062 11 8 9.9424 1.7547 1.4087 12 8 8.1607 2.2109 3.0634 13 6 8.2873 -0.2446 2.0272 14 6 9.1535 -0.8570 3.1296 15 6 8.8649 -2.3562 3.2312 16 6 9.7186 -2.9596 4.3165 17 1 10.3993 -2.3363 4.8775 18 6 9.6307 -4.3075 4.5935 19 7 8.8022 -5.0665 3.9100 20 14 10.6894 -5.0556 5.9384 21 1 11.5307 -3.9972 6.5525 22 1 9.8166 -5.6586 6.9776 23 1 11.5622 -6.1059 5.3548 24 6 3.6494 3.4551 1.2242 25 6 2.1224 3.4323 1.3311 26 8 1.6620 2.0827 1.2218 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9964 0.8603 0.6927 33 1 3.8568 1.0089 -1.0759 34 1 5.7814 2.5089 -1.1986 35 1 5.8568 3.9108 -0.1045 36 1 5.9173 2.3836 1.8482 37 1 5.8418 0.9817 0.7539 38 1 8.0192 2.4080 -0.1310 39 1 7.2347 -0.3962 2.2663 40 1 8.5165 -0.7243 1.0757 41 1 10.2063 -0.7054 2.8908 42 1 8.9240 -0.3772 4.0809 43 1 7.8123 -2.5082 3.4696 44 1 9.0949 -2.8358 2.2796 45 1 8.7401 -6.0147 4.1051 46 1 4.0007 4.4866 1.2497 47 1 4.0810 2.9030 2.0591 48 1 1.8186 3.8436 2.2936 49 1 1.6923 4.0304 0.5277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487356842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:49 Heat of formation + Delta-G solvation = -134.040167 kcal Electronic energy + Delta-G solvation = -27400.698256 eV Core-core repulsion = 23489.301966 eV Total energy + Delta-G solvation = -3911.396290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26271 -37.34583 -36.88100 -35.81292 -34.70913 -34.64639 -34.26859 -32.21674 -30.33484 -29.36133 -27.84735 -26.21887 -24.53876 -23.77664 -23.36326 -21.56259 -20.70552 -20.37961 -19.28918 -17.59792 -17.00175 -16.80419 -16.61300 -16.39301 -15.81275 -15.68396 -15.36514 -15.18826 -14.74900 -14.48889 -14.31130 -14.23315 -14.03794 -13.90369 -13.33741 -12.70873 -12.63245 -12.42527 -12.31608 -12.18834 -12.01839 -11.94284 -11.89781 -11.82519 -11.75631 -11.58451 -11.29672 -11.26696 -11.19691 -10.95603 -10.87125 -10.69261 -10.44483 -9.99199 -9.94302 -9.77844 -9.36667 -9.12270 -8.75966 -8.43458 -6.08127 -4.11155 0.40213 2.73590 3.27862 3.35401 3.35714 3.40371 3.47777 3.87906 4.29432 4.33158 4.40572 4.48151 4.55655 4.62735 4.73352 4.75231 4.82140 4.94864 5.00532 5.02902 5.08576 5.13308 5.19208 5.23204 5.28476 5.34502 5.38401 5.39695 5.50999 5.58212 5.62418 5.69653 5.72863 5.84158 5.88461 6.03930 6.22573 6.40424 6.48425 6.49481 6.79866 6.84048 6.89292 7.53939 7.63404 7.89841 8.30190 8.95217 9.53778 11.03133 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.002721 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.172987 B =10286.852267 C =12264.670493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.095 3.905 4 H 0.066 0.934 5 C 0.012 3.988 6 N -0.529 5.529 7 C 0.050 3.950 8 C 0.075 3.925 9 N -1.121 6.121 10 S 2.601 3.399 11 O -0.962 6.962 12 O -0.962 6.962 13 C -0.608 4.608 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.007 3.993 25 C 0.066 3.934 26 O -0.379 6.379 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.415 0.585 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.089 0.911 47 H 0.052 0.948 48 H 0.099 0.901 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 16.594 -12.312 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.037 3.963 4 H 0.084 0.916 5 C -0.116 4.116 6 N -0.253 5.253 7 C -0.079 4.079 8 C -0.054 4.054 9 N -0.879 5.879 10 S 2.697 3.303 11 O -0.952 6.952 12 O -0.952 6.952 13 C -0.740 4.740 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.121 4.121 25 C -0.012 4.012 26 O -0.297 6.297 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.249 0.751 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.200 17.112 -11.915 25.804 hybrid contribution 0.915 -1.299 0.537 1.677 sum -14.285 15.813 -11.378 24.157 Atomic orbital electron populations 1.21692 0.94985 1.01685 1.02187 1.21555 0.96997 0.93967 1.03165 1.22209 0.92416 0.94305 0.87412 0.91597 1.22970 0.96386 0.89497 1.02765 1.62479 1.11083 1.17565 1.34190 1.22424 0.86084 1.00807 0.98607 1.22052 0.80175 1.01298 1.01851 1.55612 1.15882 1.80952 1.35501 1.05315 0.73404 0.78181 0.73447 1.93582 1.36670 1.85418 1.79571 1.93565 1.81274 1.71324 1.49057 1.30533 1.10755 1.22762 1.09924 1.21508 0.97217 1.01865 0.93946 1.19065 0.97383 0.86805 0.97509 1.21286 1.23035 0.93641 1.18468 0.92310 1.25024 0.95560 0.97275 0.96538 1.69966 1.36852 1.05856 1.40727 0.86496 0.80324 0.79231 0.81749 1.19596 1.20918 1.20917 1.22939 0.97326 1.00863 0.91019 1.22628 0.92221 0.83897 1.02408 1.88015 1.76500 1.26220 1.39013 0.92610 0.91940 0.92981 0.90370 0.90810 0.92852 0.89288 0.89500 0.89484 0.90101 0.91487 0.75117 0.85730 0.85267 0.91511 0.91558 0.96161 0.96129 0.92937 0.89282 0.92929 0.88302 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.81 37.16 0.36 -0.71 16 2 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 3 C 0.09 0.78 2.81 -26.68 -0.07 0.70 16 4 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 5 C 0.01 0.09 4.42 -3.71 -0.02 0.08 16 6 N -0.53 -4.21 4.94 -234.31 -1.16 -5.37 16 7 C 0.05 0.37 5.52 -3.83 -0.02 0.35 16 8 C 0.07 0.68 5.42 -4.05 -0.02 0.66 16 9 N -1.12 -11.23 5.89 -10.62 -0.06 -11.30 16 10 S 2.60 37.24 5.46 -107.50 -0.59 36.65 16 11 O -0.96 -16.57 18.08 -57.54 -1.04 -17.61 16 12 O -0.96 -16.72 17.50 -57.54 -1.01 -17.73 16 13 C -0.61 -9.21 6.07 37.16 0.23 -8.99 16 14 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 15 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 16 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.01 0.05 5.33 -3.71 -0.02 0.03 16 25 C 0.07 0.50 7.01 37.21 0.26 0.76 16 26 O -0.38 -3.69 10.01 -35.23 -0.35 -4.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.47 6.40 -51.93 -0.33 0.14 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.08 0.84 6.16 -51.93 -0.32 0.52 16 37 H 0.07 0.57 6.42 -51.93 -0.33 0.24 16 38 H 0.42 3.27 8.62 -34.47 -0.30 2.98 16 39 H 0.12 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 47 H 0.05 0.48 6.59 -51.93 -0.34 0.13 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -35.39 399.16 -11.37 -46.77 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.76 Total: -0.78 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -0.14 Total: -23.39 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.48 Total: -42.44 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -2.40 Total: -39.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.59 Total: 36.65 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.39 -11.37 -46.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487356842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.275 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds