Wall clock time and date at job start Tue Mar 31 2020 17:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46920 * 2 1 4 4 H 1.08993 * 109.50503 * 304.91723 * 3 2 1 5 5 C 1.53094 * 109.50532 * 184.78244 * 3 2 1 6 6 N 1.47014 * 109.29450 * 183.24140 * 5 3 2 7 7 C 1.46898 * 111.03763 * 182.34845 * 6 5 3 8 8 C 1.52991 * 109.47292 * 302.38390 * 7 6 5 9 9 N 1.46497 * 109.47196 * 179.97438 * 8 7 6 10 10 S 1.65601 * 120.00296 * 165.00415 * 9 8 7 11 11 O 1.42098 * 104.28043 * 181.06973 * 10 9 8 12 12 O 1.42100 * 104.27367 * 308.92983 * 10 9 8 13 13 C 1.81406 * 104.45056 * 64.99708 * 10 9 8 14 14 C 1.52996 * 109.46908 * 180.02562 * 13 10 9 15 15 C 1.53009 * 109.46845 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46926 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99800 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47230 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47032 * 120.00260 * 20 18 16 23 23 H 1.48503 * 109.47153 * 240.00053 * 20 18 16 24 24 C 1.47018 * 110.75310 * 58.54598 * 6 5 3 25 25 C 1.53095 * 109.29409 * 301.45410 * 24 6 5 26 26 O 1.43015 * 109.50687 * 64.99991 * 3 2 1 27 27 H 1.09007 * 109.47394 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47417 * 299.99720 * 1 2 3 29 29 H 1.08998 * 109.47284 * 59.99811 * 1 2 3 30 30 H 1.08993 * 109.47144 * 240.00242 * 2 1 3 31 31 H 1.08999 * 109.46835 * 119.99904 * 2 1 3 32 32 H 1.09006 * 109.50944 * 303.15050 * 5 3 2 33 33 H 1.08996 * 109.51243 * 63.23829 * 5 3 2 34 34 H 1.08999 * 109.47135 * 62.39066 * 7 6 5 35 35 H 1.09004 * 109.46940 * 182.38160 * 7 6 5 36 36 H 1.08999 * 109.47582 * 300.00401 * 8 7 6 37 37 H 1.09005 * 109.46792 * 60.00034 * 8 7 6 38 38 H 0.97004 * 120.00156 * 344.99641 * 9 8 7 39 39 H 1.09005 * 109.47070 * 300.00192 * 13 10 9 40 40 H 1.08998 * 109.46918 * 59.99989 * 13 10 9 41 41 H 1.09005 * 109.46958 * 299.99705 * 14 13 10 42 42 H 1.08998 * 109.47794 * 59.99969 * 14 13 10 43 43 H 1.08997 * 109.47195 * 299.99780 * 15 14 13 44 44 H 1.09006 * 109.46940 * 59.99720 * 15 14 13 45 45 H 0.97007 * 119.99812 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.50864 * 181.49645 * 24 6 5 47 47 H 1.09003 * 109.50425 * 61.41284 * 24 6 5 48 48 H 1.08994 * 109.50879 * 176.75852 * 25 24 6 49 49 H 1.09001 * 109.51139 * 296.84757 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6068 1.9817 -0.8424 5 6 3.5661 1.4452 -0.1203 6 7 4.0572 2.8287 -0.0417 7 6 5.5157 2.8808 -0.2091 8 6 6.1830 2.0117 0.8586 9 7 7.6375 2.0632 0.6914 10 16 8.6300 1.5327 1.9062 11 8 9.9424 1.7547 1.4087 12 8 8.1607 2.2109 3.0634 13 6 8.2873 -0.2446 2.0272 14 6 9.1535 -0.8570 3.1296 15 6 8.8649 -2.3562 3.2312 16 6 9.7186 -2.9596 4.3165 17 1 10.3993 -2.3363 4.8775 18 6 9.6307 -4.3075 4.5935 19 7 8.8022 -5.0665 3.9100 20 14 10.6894 -5.0556 5.9384 21 1 11.5307 -3.9972 6.5525 22 1 9.8166 -5.6586 6.9776 23 1 11.5622 -6.1059 5.3548 24 6 3.6494 3.4551 1.2242 25 6 2.1224 3.4323 1.3311 26 8 1.6620 2.0827 1.2218 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9964 0.8603 0.6927 33 1 3.8568 1.0089 -1.0759 34 1 5.7814 2.5089 -1.1986 35 1 5.8568 3.9108 -0.1045 36 1 5.9173 2.3836 1.8482 37 1 5.8418 0.9817 0.7539 38 1 8.0192 2.4080 -0.1310 39 1 7.2347 -0.3962 2.2663 40 1 8.5165 -0.7243 1.0757 41 1 10.2063 -0.7054 2.8908 42 1 8.9240 -0.3772 4.0809 43 1 7.8123 -2.5082 3.4696 44 1 9.0949 -2.8358 2.2796 45 1 8.7401 -6.0147 4.1051 46 1 4.0007 4.4866 1.2497 47 1 4.0810 2.9030 2.0591 48 1 1.8186 3.8436 2.2936 49 1 1.6923 4.0304 0.5277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487356842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:48 Heat of formation + Delta-G solvation = -161.665509 kcal Electronic energy + Delta-G solvation = -27401.896180 eV Core-core repulsion = 23489.301966 eV Total energy + Delta-G solvation = -3912.594214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88891 -38.30993 -37.90034 -37.10539 -36.50018 -35.43062 -34.88774 -34.19227 -30.93963 -30.03980 -29.68589 -26.91425 -25.65941 -25.14158 -24.02657 -22.48921 -22.13614 -21.02466 -20.42859 -18.78099 -18.54533 -17.72045 -17.57719 -17.27152 -17.05971 -16.55053 -16.44867 -16.31268 -15.88643 -15.68644 -15.38517 -14.92623 -14.81239 -14.56204 -14.51262 -14.11351 -13.93871 -13.58802 -13.41879 -13.26940 -13.18405 -13.03525 -13.02425 -12.93763 -12.79442 -12.73227 -12.63561 -12.42869 -12.18953 -12.16515 -11.89239 -11.79073 -11.78950 -11.40142 -11.30787 -11.13345 -10.60190 -10.58192 -10.44604 -9.41294 -8.24952 -6.35954 -0.79092 1.38167 1.38952 1.52131 1.70670 2.37998 2.69848 2.73740 2.88305 3.08692 3.17824 3.67946 3.72828 3.80137 3.89609 3.94538 4.00849 4.10298 4.14476 4.19134 4.32467 4.34761 4.42552 4.44830 4.47288 4.60980 4.64569 4.66652 4.78794 4.82555 4.88122 4.91139 4.97104 5.02382 5.03264 5.10011 5.13161 5.27846 5.42729 5.45156 5.59589 5.76900 5.87489 5.88597 6.07922 6.17244 6.28437 6.79667 7.33566 8.86714 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.002721 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.172987 B =10286.852267 C =12264.670493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.093 3.907 4 H 0.071 0.929 5 C 0.010 3.990 6 N -0.528 5.528 7 C 0.054 3.946 8 C 0.068 3.932 9 N -1.102 6.102 10 S 2.632 3.368 11 O -0.989 6.989 12 O -0.992 6.992 13 C -0.610 4.610 14 C -0.107 4.107 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.276 1.276 24 C 0.005 3.995 25 C 0.063 3.937 26 O -0.401 6.401 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.429 0.571 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.102 0.898 47 H 0.037 0.963 48 H 0.108 0.892 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 17.361 -13.232 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.036 3.964 4 H 0.089 0.911 5 C -0.118 4.118 6 N -0.252 5.252 7 C -0.075 4.075 8 C -0.060 4.060 9 N -0.864 5.864 10 S 2.727 3.273 11 O -0.979 6.979 12 O -0.982 6.982 13 C -0.740 4.740 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.123 4.123 25 C -0.014 4.014 26 O -0.320 6.320 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.266 0.734 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.074 0.926 46 H 0.120 0.880 47 H 0.056 0.944 48 H 0.126 0.874 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.211 17.884 -12.843 26.761 hybrid contribution 0.845 -1.510 0.777 1.896 sum -14.366 16.374 -12.066 24.902 Atomic orbital electron populations 1.21668 0.94811 1.01927 1.01924 1.21583 0.97179 0.93774 1.03176 1.22279 0.92656 0.94453 0.87044 0.91146 1.23009 0.96189 0.89490 1.03088 1.62534 1.11281 1.17414 1.33942 1.22476 0.85485 1.00920 0.98657 1.22237 0.79221 1.02369 1.02132 1.55128 1.15992 1.80144 1.35179 1.04157 0.72761 0.77160 0.73232 1.93541 1.38759 1.85573 1.80061 1.93530 1.81738 1.71750 1.51146 1.30500 1.10688 1.23842 1.09012 1.21317 0.98434 0.98837 0.96024 1.18958 0.95767 0.90128 0.95829 1.21763 1.23564 0.94342 1.19371 0.92213 1.25933 0.96840 0.97831 0.98933 1.70073 1.38247 1.06302 1.42278 0.85429 0.78643 0.78434 0.78760 1.18822 1.20211 1.20138 1.22977 0.97438 1.01346 0.90559 1.22749 0.92130 0.83227 1.03285 1.87992 1.76922 1.27246 1.39865 0.92127 0.93320 0.92081 0.88812 0.92294 0.94027 0.87781 0.87732 0.88724 0.91335 0.90659 0.73377 0.84230 0.83417 0.91419 0.91651 0.97986 0.97816 0.92607 0.88022 0.94446 0.87390 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.81 71.98 0.71 -1.31 16 2 C -0.12 -1.72 5.65 30.60 0.17 -1.54 16 3 C 0.09 1.44 2.81 30.63 0.09 1.52 16 4 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 5 C 0.01 0.15 4.42 86.31 0.38 0.53 16 6 N -0.53 -7.39 4.94 -895.22 -4.42 -11.81 16 7 C 0.05 0.66 5.52 86.30 0.48 1.14 16 8 C 0.07 1.13 5.42 86.38 0.47 1.59 16 9 N -1.10 -19.77 5.89 -187.50 -1.10 -20.87 16 10 S 2.63 72.31 5.46 -56.49 -0.31 72.00 16 11 O -0.99 -32.91 18.08 -127.65 -2.31 -35.22 16 12 O -0.99 -33.76 17.50 -127.65 -2.23 -36.00 16 13 C -0.61 -17.94 6.07 71.98 0.44 -17.51 16 14 C -0.11 -4.33 5.16 30.60 0.16 -4.18 16 15 C 0.03 1.62 4.97 29.85 0.15 1.77 16 16 C -0.55 -31.49 9.11 25.60 0.23 -31.26 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 18 C 0.00 0.17 5.46 84.66 0.46 0.63 16 19 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 20 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.00 0.07 5.33 86.31 0.46 0.53 16 25 C 0.06 0.91 7.01 72.01 0.50 1.41 16 26 O -0.40 -7.65 10.01 -148.98 -1.49 -9.14 16 27 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.04 0.70 6.40 -2.38 -0.02 0.69 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.05 8.11 -2.38 -0.02 1.03 16 36 H 0.07 1.34 6.16 -2.39 -0.01 1.33 16 37 H 0.08 1.14 6.42 -2.38 -0.02 1.13 16 38 H 0.43 5.60 8.62 -96.74 -0.83 4.76 16 39 H 0.14 3.66 8.14 -2.39 -0.02 3.65 16 40 H 0.15 3.78 8.14 -2.39 -0.02 3.76 16 41 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 42 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 45 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 46 H 0.10 1.20 8.12 -2.39 -0.02 1.18 16 47 H 0.04 0.66 6.59 -2.39 -0.02 0.65 16 48 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -75.83 399.16 -4.77 -80.60 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.08 Total: 16.18 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 4.69 Total: -46.67 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -5.24 Total: -88.02 kcal Atomic # 8 Polarization: -74.32 SS G_CDS: -6.03 Total: -80.35 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 72.31 SS G_CDS: -0.31 Total: 72.00 kcal Total: -75.83 -4.77 -80.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487356842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.066 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds