Wall clock time and date at job start Tue Mar 31 2020 17:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 H 1.08993 * 109.54144 * 55.11465 * 3 2 1 5 5 C 1.53103 * 109.50321 * 175.21683 * 3 2 1 6 6 N 1.47017 * 109.25606 * 176.78422 * 5 3 2 7 7 C 1.46900 * 110.99765 * 177.61039 * 6 5 3 8 8 C 1.53001 * 109.46922 * 189.68430 * 7 6 5 9 9 N 1.46498 * 109.47194 * 180.02562 * 8 7 6 10 10 S 1.65601 * 120.00451 * 164.99717 * 9 8 7 11 11 O 1.42096 * 104.27941 * 181.07017 * 10 9 8 12 12 O 1.42105 * 104.27428 * 308.92719 * 10 9 8 13 13 C 1.81400 * 104.44835 * 64.99567 * 10 9 8 14 14 C 1.52990 * 109.47086 * 180.02562 * 13 10 9 15 15 C 1.53007 * 109.47128 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00224 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00126 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99651 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47185 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46968 * 120.00350 * 20 18 16 23 23 H 1.48504 * 109.47136 * 240.00513 * 20 18 16 24 24 C 1.47014 * 110.75303 * 301.38548 * 6 5 3 25 25 C 1.53096 * 109.25675 * 58.61803 * 24 6 5 26 26 O 1.43010 * 109.51074 * 294.99919 * 3 2 1 27 27 H 1.09001 * 109.46634 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.46915 * 59.99312 * 1 2 3 29 29 H 1.08999 * 109.46654 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46861 * 240.00724 * 2 1 3 31 31 H 1.08996 * 109.47170 * 120.00258 * 2 1 3 32 32 H 1.09006 * 109.50645 * 56.85001 * 5 3 2 33 33 H 1.08995 * 109.54475 * 296.74136 * 5 3 2 34 34 H 1.09003 * 109.47456 * 309.67891 * 7 6 5 35 35 H 1.09000 * 109.47638 * 69.68242 * 7 6 5 36 36 H 1.09003 * 109.46557 * 299.99423 * 8 7 6 37 37 H 1.08992 * 109.47213 * 59.99766 * 8 7 6 38 38 H 0.97006 * 119.99819 * 345.00156 * 9 8 7 39 39 H 1.09004 * 109.47303 * 300.00628 * 13 10 9 40 40 H 1.09003 * 109.46574 * 60.00185 * 13 10 9 41 41 H 1.09001 * 109.47474 * 299.99609 * 14 13 10 42 42 H 1.09003 * 109.47414 * 60.00515 * 14 13 10 43 43 H 1.09002 * 109.47152 * 299.99747 * 15 14 13 44 44 H 1.08998 * 109.47202 * 60.00169 * 15 14 13 45 45 H 0.96995 * 119.99622 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.50706 * 298.68119 * 24 6 5 47 47 H 1.08995 * 109.54210 * 178.57064 * 24 6 5 48 48 H 1.08997 * 109.50375 * 183.21864 * 25 24 6 49 49 H 1.08994 * 109.50924 * 63.08237 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6076 1.9821 0.8426 5 6 3.5663 1.4452 0.1203 6 7 4.0565 2.8290 0.0423 7 6 5.5149 2.8812 0.2106 8 6 5.9586 4.3372 0.3655 9 7 7.4130 4.3893 0.5328 10 16 8.2164 5.8261 0.3521 11 8 9.5823 5.4921 0.5571 12 8 7.7641 6.3256 -0.8990 13 6 7.6035 6.8612 1.7099 14 6 8.2789 8.2327 1.6506 15 6 7.7624 9.1055 2.7962 16 6 8.4272 10.4567 2.7374 17 1 9.1465 10.6713 1.9609 18 6 8.1171 11.4190 3.6749 19 7 7.2416 11.1575 4.6207 20 14 8.9418 13.0936 3.6024 21 1 9.8811 13.1334 2.4529 22 1 7.9087 14.1471 3.4350 23 1 9.6915 13.3311 4.8621 24 6 3.6496 3.4551 -1.2241 25 6 2.1225 3.4324 -1.3309 26 8 1.6621 2.0827 -1.2217 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9965 0.8602 -0.6927 33 1 3.8575 1.0093 1.0760 34 1 5.7983 2.3185 1.1001 35 1 5.9975 2.4453 -0.6641 36 1 5.6752 4.8999 -0.5240 37 1 5.4760 4.7730 1.2402 38 1 7.9056 3.5821 0.7493 39 1 6.5245 6.9835 1.6150 40 1 7.8327 6.3838 2.6626 41 1 9.3579 8.1108 1.7453 42 1 8.0493 8.7099 0.6978 43 1 6.6833 9.2276 2.7019 44 1 7.9923 8.6283 3.7487 45 1 7.0237 11.8343 5.2805 46 1 4.0811 2.9023 -2.0586 47 1 4.0009 4.4866 -1.2503 48 1 1.8188 3.8437 -2.2935 49 1 1.6925 4.0297 -0.5270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487356857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:52 Heat of formation + Delta-G solvation = -135.432146 kcal Electronic energy + Delta-G solvation = -26834.525202 eV Core-core repulsion = 22923.068552 eV Total energy + Delta-G solvation = -3911.456650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.17599 -37.24358 -36.83843 -35.78430 -34.77892 -34.67999 -34.38106 -32.19558 -30.36947 -29.56442 -27.82013 -26.30509 -24.46185 -23.74042 -23.02533 -21.46292 -20.82399 -20.63609 -19.25205 -17.57415 -16.99097 -16.76430 -16.66204 -16.32511 -15.89058 -15.63755 -15.37895 -15.25530 -14.68783 -14.51377 -14.34311 -14.27241 -14.08375 -14.01020 -13.44482 -12.70003 -12.61501 -12.41233 -12.29187 -12.22616 -12.00568 -11.93517 -11.83997 -11.80998 -11.77258 -11.55988 -11.39799 -11.28040 -11.21086 -10.94336 -10.84919 -10.73654 -10.42546 -9.96775 -9.95975 -9.73788 -9.33096 -9.08790 -8.85442 -8.41892 -6.06571 -4.09535 0.43409 2.72705 3.28839 3.34030 3.36413 3.41278 3.43048 3.91920 4.25005 4.36800 4.41762 4.44057 4.52294 4.64460 4.69886 4.72690 4.84873 4.88528 4.98374 5.03351 5.10190 5.14860 5.18088 5.18789 5.29450 5.30832 5.35178 5.45165 5.49349 5.52936 5.55635 5.59520 5.73940 5.76629 5.88617 5.92649 6.25634 6.43781 6.47257 6.48305 6.83026 6.83743 6.86944 7.56410 7.66044 7.91666 8.32046 8.97014 9.55266 11.04685 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.002067 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.193319 B =13543.299551 C =14604.265507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.069 0.931 5 C 0.024 3.976 6 N -0.535 5.535 7 C 0.050 3.950 8 C 0.116 3.884 9 N -1.126 6.126 10 S 2.604 3.396 11 O -0.963 6.963 12 O -0.963 6.963 13 C -0.607 4.607 14 C -0.106 4.106 15 C 0.030 3.970 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.009 3.991 25 C 0.064 3.936 26 O -0.381 6.381 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.046 0.954 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 -24.063 -9.054 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.087 0.913 5 C -0.104 4.104 6 N -0.260 5.260 7 C -0.079 4.079 8 C -0.011 4.011 9 N -0.884 5.884 10 S 2.699 3.301 11 O -0.953 6.953 12 O -0.953 6.953 13 C -0.739 4.739 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.119 4.119 25 C -0.013 4.013 26 O -0.300 6.300 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.247 0.753 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.333 -23.482 -9.421 27.723 hybrid contribution 0.753 0.351 0.356 0.904 sum -10.580 -23.131 -9.065 27.003 Atomic orbital electron populations 1.21700 0.94909 1.01575 1.02454 1.21528 0.97061 0.94061 1.02728 1.22218 0.92400 0.94216 0.87695 0.91311 1.22822 0.96327 0.89066 1.02171 1.62114 1.11853 1.17575 1.34471 1.22251 0.87125 0.96649 1.01850 1.21251 0.79413 0.97728 1.02708 1.55676 1.16166 1.27097 1.89455 1.05229 0.73936 0.73988 0.76906 1.93579 1.32250 1.82176 1.87344 1.93564 1.82256 1.79990 1.39456 1.30527 1.12308 1.12611 1.18477 1.21503 0.99364 0.90263 1.03420 1.19070 0.96659 0.93354 0.91742 1.21295 1.24442 0.97800 1.12863 0.92308 1.25029 0.95170 0.98918 0.95327 1.69967 1.33227 1.34465 1.15742 0.86497 0.79387 0.83889 0.78025 1.19605 1.20942 1.20953 1.22954 0.97304 1.01273 0.90388 1.22663 0.92243 0.83659 1.02701 1.87981 1.76631 1.26457 1.38923 0.92754 0.91896 0.92731 0.91228 0.90482 0.93815 0.89500 0.89725 0.93717 0.90180 0.90499 0.75291 0.85472 0.85248 0.91571 0.91550 0.96097 0.96109 0.92949 0.93610 0.88762 0.88209 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.81 37.16 0.36 -0.51 16 2 C -0.12 -0.68 5.65 -26.73 -0.15 -0.83 16 3 C 0.09 0.69 2.81 -26.68 -0.07 0.61 16 4 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 5 C 0.02 0.17 4.93 -3.71 -0.02 0.16 16 6 N -0.53 -4.34 4.73 -234.30 -1.11 -5.45 16 7 C 0.05 0.39 5.10 -3.82 -0.02 0.37 16 8 C 0.12 1.05 6.06 -4.04 -0.02 1.03 16 9 N -1.13 -11.23 5.89 -10.62 -0.06 -11.29 16 10 S 2.60 36.63 5.46 -107.50 -0.59 36.04 16 11 O -0.96 -16.46 18.08 -57.54 -1.04 -17.50 16 12 O -0.96 -16.39 17.50 -57.54 -1.01 -17.40 16 13 C -0.61 -9.06 6.07 37.15 0.23 -8.83 16 14 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 15 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 16 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.01 0.07 5.43 -3.71 -0.02 0.05 16 25 C 0.06 0.50 7.01 37.21 0.26 0.76 16 26 O -0.38 -3.43 10.01 -35.23 -0.35 -3.79 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.08 0.78 6.06 -51.93 -0.31 0.47 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.41 3.31 8.62 -34.47 -0.30 3.01 16 39 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.74 6.37 -51.93 -0.33 0.41 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -35.37 402.81 -11.43 -46.80 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.91 Total: -1.83 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -0.14 Total: -22.41 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.43 Total: -42.52 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.40 Total: -38.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 36.63 SS G_CDS: -0.59 Total: 36.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.37 -11.43 -46.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487356857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.635 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds