Wall clock time and date at job start Tue Mar 31 2020 17:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 H 1.08993 * 109.54144 * 55.11465 * 3 2 1 5 5 C 1.53103 * 109.50321 * 175.21683 * 3 2 1 6 6 N 1.47017 * 109.25606 * 176.78422 * 5 3 2 7 7 C 1.46900 * 110.99765 * 177.61039 * 6 5 3 8 8 C 1.53001 * 109.46922 * 189.68430 * 7 6 5 9 9 N 1.46498 * 109.47194 * 180.02562 * 8 7 6 10 10 S 1.65601 * 120.00451 * 164.99717 * 9 8 7 11 11 O 1.42096 * 104.27941 * 181.07017 * 10 9 8 12 12 O 1.42105 * 104.27428 * 308.92719 * 10 9 8 13 13 C 1.81400 * 104.44835 * 64.99567 * 10 9 8 14 14 C 1.52990 * 109.47086 * 180.02562 * 13 10 9 15 15 C 1.53007 * 109.47128 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00224 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00126 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99651 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47185 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46968 * 120.00350 * 20 18 16 23 23 H 1.48504 * 109.47136 * 240.00513 * 20 18 16 24 24 C 1.47014 * 110.75303 * 301.38548 * 6 5 3 25 25 C 1.53096 * 109.25675 * 58.61803 * 24 6 5 26 26 O 1.43010 * 109.51074 * 294.99919 * 3 2 1 27 27 H 1.09001 * 109.46634 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.46915 * 59.99312 * 1 2 3 29 29 H 1.08999 * 109.46654 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46861 * 240.00724 * 2 1 3 31 31 H 1.08996 * 109.47170 * 120.00258 * 2 1 3 32 32 H 1.09006 * 109.50645 * 56.85001 * 5 3 2 33 33 H 1.08995 * 109.54475 * 296.74136 * 5 3 2 34 34 H 1.09003 * 109.47456 * 309.67891 * 7 6 5 35 35 H 1.09000 * 109.47638 * 69.68242 * 7 6 5 36 36 H 1.09003 * 109.46557 * 299.99423 * 8 7 6 37 37 H 1.08992 * 109.47213 * 59.99766 * 8 7 6 38 38 H 0.97006 * 119.99819 * 345.00156 * 9 8 7 39 39 H 1.09004 * 109.47303 * 300.00628 * 13 10 9 40 40 H 1.09003 * 109.46574 * 60.00185 * 13 10 9 41 41 H 1.09001 * 109.47474 * 299.99609 * 14 13 10 42 42 H 1.09003 * 109.47414 * 60.00515 * 14 13 10 43 43 H 1.09002 * 109.47152 * 299.99747 * 15 14 13 44 44 H 1.08998 * 109.47202 * 60.00169 * 15 14 13 45 45 H 0.96995 * 119.99622 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.50706 * 298.68119 * 24 6 5 47 47 H 1.08995 * 109.54210 * 178.57064 * 24 6 5 48 48 H 1.08997 * 109.50375 * 183.21864 * 25 24 6 49 49 H 1.08994 * 109.50924 * 63.08237 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6076 1.9821 0.8426 5 6 3.5663 1.4452 0.1203 6 7 4.0565 2.8290 0.0423 7 6 5.5149 2.8812 0.2106 8 6 5.9586 4.3372 0.3655 9 7 7.4130 4.3893 0.5328 10 16 8.2164 5.8261 0.3521 11 8 9.5823 5.4921 0.5571 12 8 7.7641 6.3256 -0.8990 13 6 7.6035 6.8612 1.7099 14 6 8.2789 8.2327 1.6506 15 6 7.7624 9.1055 2.7962 16 6 8.4272 10.4567 2.7374 17 1 9.1465 10.6713 1.9609 18 6 8.1171 11.4190 3.6749 19 7 7.2416 11.1575 4.6207 20 14 8.9418 13.0936 3.6024 21 1 9.8811 13.1334 2.4529 22 1 7.9087 14.1471 3.4350 23 1 9.6915 13.3311 4.8621 24 6 3.6496 3.4551 -1.2241 25 6 2.1225 3.4324 -1.3309 26 8 1.6621 2.0827 -1.2217 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9965 0.8602 -0.6927 33 1 3.8575 1.0093 1.0760 34 1 5.7983 2.3185 1.1001 35 1 5.9975 2.4453 -0.6641 36 1 5.6752 4.8999 -0.5240 37 1 5.4760 4.7730 1.2402 38 1 7.9056 3.5821 0.7493 39 1 6.5245 6.9835 1.6150 40 1 7.8327 6.3838 2.6626 41 1 9.3579 8.1108 1.7453 42 1 8.0493 8.7099 0.6978 43 1 6.6833 9.2276 2.7019 44 1 7.9923 8.6283 3.7487 45 1 7.0237 11.8343 5.2805 46 1 4.0811 2.9023 -2.0586 47 1 4.0009 4.4866 -1.2503 48 1 1.8188 3.8437 -2.2935 49 1 1.6925 4.0297 -0.5270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487356857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:51 Heat of formation + Delta-G solvation = -162.663638 kcal Electronic energy + Delta-G solvation = -26835.706048 eV Core-core repulsion = 22923.068552 eV Total energy + Delta-G solvation = -3912.637496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77019 -38.25017 -37.77751 -37.05384 -36.45894 -35.54971 -34.90457 -34.15950 -30.92209 -30.24553 -29.64829 -26.94990 -25.62213 -25.03581 -23.64558 -22.44109 -21.99109 -21.38613 -20.36749 -18.74363 -18.50690 -17.70080 -17.46480 -17.24635 -17.06257 -16.54085 -16.40472 -16.37159 -15.82336 -15.72244 -15.21707 -15.07619 -14.82660 -14.57706 -14.49269 -14.09253 -13.96597 -13.56485 -13.44444 -13.22077 -13.13834 -13.00643 -12.94452 -12.79757 -12.76634 -12.70494 -12.60151 -12.50016 -12.16829 -12.09492 -11.91753 -11.78200 -11.74145 -11.37556 -11.30643 -11.09061 -10.58061 -10.57565 -10.37689 -9.46270 -8.22941 -6.33706 -0.73828 1.39477 1.40266 1.53438 1.73683 2.39615 2.70280 2.77749 2.86704 3.10654 3.25358 3.66954 3.75344 3.84182 3.93365 3.95153 4.09086 4.10672 4.15422 4.25610 4.36223 4.40167 4.42308 4.48133 4.51794 4.61591 4.66015 4.68471 4.82516 4.84232 4.88197 4.95858 4.98383 5.00248 5.05472 5.09033 5.12336 5.26880 5.45544 5.46074 5.63620 5.79901 5.86974 5.89359 6.11000 6.19923 6.25472 6.82374 7.35638 8.88706 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.002067 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.193319 B =13543.299551 C =14604.265507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.089 3.911 4 H 0.064 0.936 5 C 0.026 3.974 6 N -0.542 5.542 7 C 0.054 3.946 8 C 0.109 3.891 9 N -1.108 6.108 10 S 2.637 3.363 11 O -0.992 6.992 12 O -0.991 6.991 13 C -0.609 4.609 14 C -0.107 4.107 15 C 0.030 3.970 16 C -0.551 4.551 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.008 3.992 25 C 0.063 3.937 26 O -0.398 6.398 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.427 0.573 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.040 0.960 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 -24.968 -9.049 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.032 3.968 4 H 0.082 0.918 5 C -0.102 4.102 6 N -0.267 5.267 7 C -0.075 4.075 8 C -0.018 4.018 9 N -0.870 5.870 10 S 2.732 3.268 11 O -0.982 6.982 12 O -0.981 6.981 13 C -0.739 4.739 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.120 4.120 25 C -0.014 4.014 26 O -0.317 6.317 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.263 0.737 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.128 0.872 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.207 -24.393 -9.415 28.448 hybrid contribution 0.650 0.569 0.362 0.937 sum -10.557 -23.824 -9.053 27.586 Atomic orbital electron populations 1.21685 0.95059 1.02034 1.01748 1.21545 0.96903 0.93221 1.03413 1.22335 0.92718 0.94833 0.86951 0.91822 1.22851 0.95963 0.88499 1.02869 1.62124 1.12056 1.18232 1.34336 1.22226 0.86929 0.95662 1.02681 1.21425 0.78408 0.98961 1.02972 1.55206 1.16718 1.26034 1.89067 1.04020 0.72981 0.74112 0.75730 1.93538 1.34360 1.82779 1.87502 1.93530 1.82611 1.81048 1.40866 1.30490 1.13065 1.10151 1.20230 1.21314 0.99723 0.92347 1.01248 1.18970 0.95505 0.93383 0.92947 1.21781 1.24738 0.99429 1.13008 0.92174 1.25942 0.95773 1.03017 0.94927 1.70075 1.34487 1.35911 1.16476 0.85425 0.78512 0.78945 0.78344 1.18802 1.20231 1.20259 1.22950 0.97427 1.01238 0.90354 1.22730 0.92107 0.83323 1.03252 1.87966 1.76975 1.26977 1.39781 0.92651 0.93385 0.91696 0.91558 0.88702 0.94110 0.87945 0.88026 0.93713 0.90856 0.89466 0.73693 0.83719 0.83526 0.91572 0.91503 0.97821 0.97881 0.92644 0.94163 0.88729 0.87198 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 71.98 0.71 -0.90 16 2 C -0.11 -1.18 5.65 30.60 0.17 -1.00 16 3 C 0.09 1.22 2.81 30.63 0.09 1.31 16 4 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 5 C 0.03 0.33 4.93 86.32 0.43 0.75 16 6 N -0.54 -7.91 4.73 -895.19 -4.23 -12.14 16 7 C 0.05 0.71 5.10 86.30 0.44 1.15 16 8 C 0.11 1.75 6.06 86.38 0.52 2.27 16 9 N -1.11 -19.71 5.89 -187.50 -1.10 -20.81 16 10 S 2.64 70.62 5.46 -56.49 -0.31 70.31 16 11 O -0.99 -32.68 18.08 -127.65 -2.31 -34.99 16 12 O -0.99 -32.74 17.50 -127.65 -2.23 -34.97 16 13 C -0.61 -17.43 6.07 71.98 0.44 -16.99 16 14 C -0.11 -4.28 5.16 30.59 0.16 -4.12 16 15 C 0.03 1.55 4.97 29.85 0.15 1.69 16 16 C -0.55 -31.30 9.11 25.60 0.23 -31.06 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 20 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 C 0.01 0.13 5.43 86.31 0.47 0.60 16 25 C 0.06 0.94 7.01 72.01 0.50 1.44 16 26 O -0.40 -6.96 10.01 -148.98 -1.49 -8.45 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.66 7.82 -2.39 -0.02 0.64 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.10 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.10 1.00 8.04 -2.39 -0.02 0.98 16 35 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 36 H 0.07 1.32 6.06 -2.39 -0.01 1.30 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.43 5.71 8.62 -96.74 -0.83 4.88 16 39 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 40 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 1.41 6.37 -2.39 -0.02 1.39 16 48 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.44 402.81 -4.52 -79.96 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.08 Total: 14.52 kcal Atomic # 6 Polarization: -49.07 SS G_CDS: 4.77 Total: -44.31 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -5.05 Total: -88.25 kcal Atomic # 8 Polarization: -72.38 SS G_CDS: -6.03 Total: -78.41 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 70.62 SS G_CDS: -0.31 Total: 70.31 kcal Total: -75.44 -4.52 -79.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487356857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.702 kcal (2) G-P(sol) polarization free energy of solvation -75.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds