Wall clock time and date at job start Tue Mar 31 2020 18:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47356 * 2 1 4 4 N 1.46500 * 109.47316 * 120.00126 * 2 1 3 5 5 C 1.46496 * 120.00199 * 300.00117 * 4 2 1 6 6 C 1.50704 * 109.46987 * 269.99795 * 5 4 2 7 7 H 1.07999 * 119.99551 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00155 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99984 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46909 * 89.99935 * 10 8 6 12 12 H 1.48502 * 109.47227 * 210.00201 * 10 8 6 13 13 H 1.48506 * 109.47127 * 329.99994 * 10 8 6 14 14 C 1.34781 * 119.99529 * 119.99516 * 4 2 1 15 15 O 1.21285 * 119.99586 * 180.02562 * 14 4 2 16 16 C 1.50694 * 120.00527 * 0.02562 * 14 4 2 17 17 N 1.46493 * 109.47566 * 179.97438 * 16 14 4 18 18 C 1.34772 * 120.00563 * 180.02562 * 17 16 14 19 19 O 1.21516 * 119.99634 * 359.97438 * 18 17 16 20 20 O 1.34639 * 120.00599 * 180.02562 * 18 17 16 21 21 C 1.45190 * 117.00170 * 179.97438 * 20 18 17 22 22 C 1.50707 * 109.47131 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.99792 * 90.00017 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97954 * 22 21 20 28 28 H 1.09000 * 109.47008 * 299.99713 * 1 2 3 29 29 H 1.09003 * 109.47243 * 59.99337 * 1 2 3 30 30 H 1.08995 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47008 * 240.00287 * 2 1 3 32 32 H 1.09000 * 109.47100 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47027 * 300.00785 * 3 2 1 34 34 H 1.09000 * 109.46828 * 60.00177 * 3 2 1 35 35 H 1.08995 * 109.47065 * 29.99575 * 5 4 2 36 36 H 1.09001 * 109.47124 * 149.99782 * 5 4 2 37 37 H 0.97002 * 120.00596 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.47069 * 59.99476 * 16 14 4 39 39 H 1.09000 * 109.47229 * 300.00004 * 16 14 4 40 40 H 0.97006 * 119.99893 * 359.97438 * 17 16 14 41 41 H 1.09005 * 109.47695 * 59.99979 * 21 20 18 42 42 H 1.09000 * 109.47342 * 299.99215 * 21 20 18 43 43 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 47 47 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8017 2.9830 7 1 3.5433 1.0355 2.3457 8 6 2.5813 1.4106 4.2140 9 7 3.4880 2.2758 4.6124 10 14 1.1280 1.0066 5.3160 11 1 1.4763 -0.1390 6.1943 12 1 0.7970 2.1886 6.1518 13 1 -0.0445 0.6491 4.4777 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0626 16 6 3.1576 -2.3010 -0.2964 17 7 4.0002 -3.4919 -0.1621 18 6 4.4502 -4.1266 -1.2625 19 8 4.1567 -3.7114 -2.3662 20 8 5.2242 -5.2214 -1.1391 21 6 5.6720 -5.8539 -2.3669 22 6 6.5209 -7.0536 -2.0333 23 6 5.9329 -8.2953 -1.8806 24 6 6.7116 -9.3959 -1.5751 25 6 8.0783 -9.2549 -1.4230 26 6 8.6656 -8.0122 -1.5704 27 6 7.8875 -6.9125 -1.8805 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 0.6906 0.2973 2.4844 36 1 1.6239 -1.0228 3.2291 37 1 3.4021 2.7045 5.4782 38 1 3.7028 -1.5302 -0.8411 39 1 2.2494 -2.5578 -0.8417 40 1 4.2348 -3.8232 0.7189 41 1 6.2601 -5.1435 -2.9481 42 1 4.8067 -6.1712 -2.9488 43 1 4.8651 -8.4056 -1.9999 44 1 6.2522 -10.3659 -1.4554 45 1 8.6866 -10.1149 -1.1847 46 1 9.7327 -7.9012 -1.4472 47 1 8.3469 -5.9425 -2.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490914120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:52 Heat of formation + Delta-G solvation = -86.106837 kcal Electronic energy + Delta-G solvation = -28039.379748 eV Core-core repulsion = 23994.618052 eV Total energy + Delta-G solvation = -4044.761696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63255 -39.65402 -39.24988 -36.79768 -36.21063 -34.49897 -32.79262 -32.42295 -31.25538 -31.13101 -29.30464 -27.30150 -26.81463 -26.18014 -22.93999 -22.61258 -21.80822 -21.49395 -21.13621 -19.37085 -18.07521 -17.42770 -16.96035 -16.77577 -16.74333 -16.29787 -15.70593 -15.50083 -15.38928 -14.93694 -14.50705 -13.98635 -13.88256 -13.76583 -13.66305 -13.41015 -13.26214 -13.06519 -12.84376 -12.55932 -12.52181 -12.23725 -11.91269 -11.74098 -11.48125 -11.45491 -11.43617 -11.02567 -10.93154 -10.77199 -10.69253 -10.57367 -10.41277 -10.15111 -9.53960 -9.27368 -9.26037 -9.25908 -9.22840 -8.61155 -7.86480 -6.11039 -4.09315 0.79802 1.06227 2.14660 2.77510 3.08969 3.26119 3.31850 3.34356 3.42508 3.65403 4.16161 4.36620 4.46280 4.52147 4.66844 4.71552 4.77878 4.90827 5.06430 5.12244 5.17496 5.21926 5.29681 5.33023 5.39699 5.46152 5.54666 5.59282 5.68664 5.89906 6.01515 6.06192 6.09445 6.15511 6.20481 6.21384 6.27087 6.34107 6.47282 6.61810 6.68764 6.88504 6.95340 7.20513 7.41940 7.56874 8.06446 8.30503 8.41782 8.71669 8.93210 9.48684 11.01929 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002195 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.312538 B =12753.350612 C =13595.009931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.580 5.580 5 C 0.215 3.785 6 C -0.524 4.524 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.503 3.497 15 O -0.536 6.536 16 C 0.118 3.882 17 N -0.693 5.693 18 C 0.652 3.348 19 O -0.578 6.578 20 O -0.363 6.363 21 C 0.129 3.871 22 C -0.099 4.099 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.092 4.092 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.419 0.581 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -17.766 -15.913 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.311 5.311 5 C 0.095 3.905 6 C -0.562 4.562 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.288 3.712 15 O -0.414 6.414 16 C -0.009 4.009 17 N -0.355 5.355 18 C 0.404 3.596 19 O -0.468 6.468 20 O -0.277 6.277 21 C 0.055 3.945 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.143 4.143 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.110 4.110 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.258 0.742 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.836 -17.761 -15.787 23.932 hybrid contribution -0.544 -0.117 0.997 1.142 sum 2.292 -17.878 -14.790 23.316 Atomic orbital electron populations 1.22170 0.95281 1.01942 1.02690 1.21146 0.94345 0.94743 0.87337 1.22135 1.01852 0.94973 1.02525 1.47975 1.48731 1.25870 1.08523 1.19692 0.96570 0.95278 0.78973 1.21299 1.09255 1.22580 1.03090 0.90458 1.24846 0.96052 0.94752 0.97357 1.69884 1.34523 1.28235 1.20786 0.86903 0.83400 0.78267 0.81415 1.19981 1.21128 1.19113 1.20078 0.79626 0.81517 0.89939 1.90685 1.53374 1.58234 1.39072 1.21153 0.95713 0.87126 0.96881 1.44313 1.53285 1.29342 1.08513 1.17922 0.77900 0.79329 0.84435 1.90989 1.62373 1.68364 1.25073 1.86319 1.63735 1.40403 1.37258 1.21700 0.97645 0.91665 0.83482 1.19557 0.93805 0.93661 1.02853 1.21126 1.00061 0.92130 0.97802 1.21171 0.94040 0.98772 1.00302 1.21256 0.95100 0.97579 0.98865 1.21184 1.00130 0.92725 1.00172 1.21146 0.93112 0.99163 0.97624 0.91480 0.91735 0.92752 0.90212 0.92314 0.92956 0.89932 0.94770 0.94580 0.92572 0.88324 0.88564 0.74199 0.90099 0.90148 0.85676 0.85713 0.85858 0.85662 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.17 37.16 0.34 -1.78 16 2 C 0.13 1.93 3.17 -67.93 -0.22 1.71 16 3 C -0.16 -2.50 8.47 37.16 0.31 -2.18 16 4 N -0.58 -11.11 2.39 -167.47 -0.40 -11.51 16 5 C 0.22 4.96 3.66 -5.19 -0.02 4.94 16 6 C -0.52 -14.23 8.38 -34.44 -0.29 -14.51 16 7 H 0.08 2.31 7.87 -52.49 -0.41 1.89 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 10 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 14 C 0.50 9.57 7.74 -10.99 -0.09 9.48 16 15 O -0.54 -12.16 15.25 5.55 0.08 -12.08 16 16 C 0.12 1.76 4.46 -5.20 -0.02 1.73 16 17 N -0.69 -10.44 5.53 -66.47 -0.37 -10.81 16 18 C 0.65 9.77 8.75 54.05 0.47 10.24 16 19 O -0.58 -9.62 16.13 -19.28 -0.31 -9.93 16 20 O -0.36 -4.87 10.25 -40.32 -0.41 -5.28 16 21 C 0.13 1.37 5.60 36.01 0.20 1.58 16 22 C -0.10 -0.96 5.52 -104.62 -0.58 -1.53 16 23 C -0.09 -0.81 9.70 -39.58 -0.38 -1.20 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.11 -0.81 10.05 -39.58 -0.40 -1.21 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.09 -0.83 9.70 -39.58 -0.38 -1.21 16 28 H 0.07 0.97 6.66 -51.93 -0.35 0.63 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.00 5.77 -51.93 -0.30 0.70 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 35 H 0.03 0.75 5.48 -51.93 -0.28 0.47 16 36 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 1.40 7.79 -51.93 -0.40 1.00 16 39 H 0.10 1.25 7.79 -51.93 -0.40 0.85 16 40 H 0.42 6.47 7.55 -40.82 -0.31 6.17 16 41 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -33.73 391.69 -8.32 -42.05 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.99 Total: 6.19 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.94 Total: 5.29 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.01 Total: -48.45 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.64 Total: -27.29 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.73 -8.32 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490914120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.057 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds