Wall clock time and date at job start Tue Mar 31 2020 18:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47356 * 2 1 4 4 N 1.46500 * 109.47316 * 120.00126 * 2 1 3 5 5 C 1.46496 * 120.00199 * 300.00117 * 4 2 1 6 6 C 1.50704 * 109.46987 * 269.99795 * 5 4 2 7 7 H 1.07999 * 119.99551 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00155 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99984 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46909 * 89.99935 * 10 8 6 12 12 H 1.48502 * 109.47227 * 210.00201 * 10 8 6 13 13 H 1.48506 * 109.47127 * 329.99994 * 10 8 6 14 14 C 1.34781 * 119.99529 * 119.99516 * 4 2 1 15 15 O 1.21285 * 119.99586 * 180.02562 * 14 4 2 16 16 C 1.50694 * 120.00527 * 0.02562 * 14 4 2 17 17 N 1.46493 * 109.47566 * 179.97438 * 16 14 4 18 18 C 1.34772 * 120.00563 * 180.02562 * 17 16 14 19 19 O 1.21516 * 119.99634 * 359.97438 * 18 17 16 20 20 O 1.34639 * 120.00599 * 180.02562 * 18 17 16 21 21 C 1.45190 * 117.00170 * 179.97438 * 20 18 17 22 22 C 1.50707 * 109.47131 * 179.97438 * 21 20 18 23 23 C 1.38238 * 119.99792 * 90.00017 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97954 * 22 21 20 28 28 H 1.09000 * 109.47008 * 299.99713 * 1 2 3 29 29 H 1.09003 * 109.47243 * 59.99337 * 1 2 3 30 30 H 1.08995 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47008 * 240.00287 * 2 1 3 32 32 H 1.09000 * 109.47100 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47027 * 300.00785 * 3 2 1 34 34 H 1.09000 * 109.46828 * 60.00177 * 3 2 1 35 35 H 1.08995 * 109.47065 * 29.99575 * 5 4 2 36 36 H 1.09001 * 109.47124 * 149.99782 * 5 4 2 37 37 H 0.97002 * 120.00596 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.47069 * 59.99476 * 16 14 4 39 39 H 1.09000 * 109.47229 * 300.00004 * 16 14 4 40 40 H 0.97006 * 119.99893 * 359.97438 * 17 16 14 41 41 H 1.09005 * 109.47695 * 59.99979 * 21 20 18 42 42 H 1.09000 * 109.47342 * 299.99215 * 21 20 18 43 43 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 47 47 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8017 2.9830 7 1 3.5433 1.0355 2.3457 8 6 2.5813 1.4106 4.2140 9 7 3.4880 2.2758 4.6124 10 14 1.1280 1.0066 5.3160 11 1 1.4763 -0.1390 6.1943 12 1 0.7970 2.1886 6.1518 13 1 -0.0445 0.6491 4.4777 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0626 16 6 3.1576 -2.3010 -0.2964 17 7 4.0002 -3.4919 -0.1621 18 6 4.4502 -4.1266 -1.2625 19 8 4.1567 -3.7114 -2.3662 20 8 5.2242 -5.2214 -1.1391 21 6 5.6720 -5.8539 -2.3669 22 6 6.5209 -7.0536 -2.0333 23 6 5.9329 -8.2953 -1.8806 24 6 6.7116 -9.3959 -1.5751 25 6 8.0783 -9.2549 -1.4230 26 6 8.6656 -8.0122 -1.5704 27 6 7.8875 -6.9125 -1.8805 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 0.6906 0.2973 2.4844 36 1 1.6239 -1.0228 3.2291 37 1 3.4021 2.7045 5.4782 38 1 3.7028 -1.5302 -0.8411 39 1 2.2494 -2.5578 -0.8417 40 1 4.2348 -3.8232 0.7189 41 1 6.2601 -5.1435 -2.9481 42 1 4.8067 -6.1712 -2.9488 43 1 4.8651 -8.4056 -1.9999 44 1 6.2522 -10.3659 -1.4554 45 1 8.6866 -10.1149 -1.1847 46 1 9.7327 -7.9012 -1.4472 47 1 8.3469 -5.9425 -2.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490914120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:51 Heat of formation + Delta-G solvation = -108.285373 kcal Electronic energy + Delta-G solvation = -28040.341482 eV Core-core repulsion = 23994.618052 eV Total energy + Delta-G solvation = -4045.723429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78240 -40.95189 -40.06231 -37.98455 -37.57038 -35.76714 -34.83199 -33.14247 -32.63192 -31.84910 -30.91242 -28.68051 -27.96416 -27.19918 -24.40856 -23.54093 -22.95594 -22.55807 -22.15289 -20.59923 -19.47267 -19.05227 -18.34505 -17.90432 -17.82297 -17.38924 -17.09900 -16.67260 -16.26097 -16.08759 -15.92139 -15.48798 -14.92655 -14.85419 -14.65380 -14.51578 -14.36902 -14.31008 -13.97946 -13.90065 -13.59623 -13.53962 -13.32485 -13.26389 -12.87446 -12.64733 -12.38807 -12.28956 -12.13815 -12.08327 -11.91528 -11.83607 -11.75679 -11.70013 -11.54071 -10.84982 -10.78009 -10.46006 -9.87090 -9.86897 -9.49353 -8.28814 -6.31485 0.10354 0.45503 1.11201 1.34152 1.37628 1.45035 1.55569 1.64447 2.18653 2.33272 2.78008 3.05115 3.21520 3.38884 3.71849 3.80561 3.95010 4.08353 4.18195 4.20457 4.23132 4.25350 4.28803 4.31485 4.40194 4.58255 4.69393 4.70604 4.85856 4.90089 4.92291 4.98978 4.99366 5.06122 5.10661 5.10728 5.24148 5.40838 5.48655 5.50299 5.56576 5.57391 5.59012 5.63402 6.03533 6.21345 6.27242 6.58157 6.70124 7.12534 7.16363 7.32955 8.87583 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002195 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.312538 B =12753.350612 C =13595.009931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 C -0.152 4.152 4 N -0.584 5.584 5 C 0.225 3.775 6 C -0.518 4.518 7 H 0.035 0.965 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.939 3.061 11 H -0.278 1.278 12 H -0.280 1.280 13 H -0.237 1.237 14 C 0.498 3.502 15 O -0.581 6.581 16 C 0.129 3.871 17 N -0.696 5.696 18 C 0.656 3.344 19 O -0.594 6.594 20 O -0.368 6.368 21 C 0.127 3.873 22 C -0.117 4.117 23 C -0.105 4.105 24 C -0.130 4.130 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.108 4.108 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.417 0.583 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.134 0.866 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -19.501 -17.499 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 C -0.210 4.210 4 N -0.315 5.315 5 C 0.103 3.897 6 C -0.557 4.557 7 H 0.053 0.947 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.763 3.237 11 H -0.204 1.204 12 H -0.205 1.205 13 H -0.160 1.160 14 C 0.285 3.715 15 O -0.461 6.461 16 C 0.004 3.996 17 N -0.357 5.357 18 C 0.409 3.591 19 O -0.486 6.486 20 O -0.282 6.282 21 C 0.053 3.947 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.148 4.148 25 C -0.130 4.130 26 C -0.149 4.149 27 C -0.126 4.126 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.255 0.745 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.152 0.848 44 H 0.164 0.836 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.274 -19.500 -17.430 26.186 hybrid contribution 0.071 0.386 1.406 1.460 sum 1.345 -19.114 -16.024 24.978 Atomic orbital electron populations 1.22145 0.93096 1.02917 1.03389 1.21533 0.96096 0.93829 0.86650 1.22073 1.00278 0.96003 1.02648 1.48054 1.48832 1.26155 1.08457 1.19336 0.95919 0.93546 0.80942 1.21485 1.08831 1.22944 1.02444 0.94665 1.25767 0.99181 0.94659 0.99147 1.70041 1.37043 1.30022 1.21532 0.85838 0.80629 0.77825 0.79415 1.20431 1.20544 1.16049 1.20772 0.78573 0.81004 0.91136 1.90659 1.54861 1.59622 1.40993 1.21122 0.97083 0.87386 0.94050 1.44342 1.53441 1.29428 1.08519 1.17886 0.77769 0.79484 0.83954 1.90971 1.63120 1.68959 1.25521 1.86336 1.63226 1.39778 1.38881 1.21905 0.98129 0.92000 0.82629 1.19605 0.94092 0.93650 1.04387 1.21344 1.00813 0.92205 0.97934 1.21495 0.94329 0.99392 0.99593 1.21625 0.95367 0.98218 0.97783 1.21483 1.01135 0.92639 0.99682 1.21339 0.93162 0.99982 0.98082 0.93304 0.88503 0.91634 0.86810 0.94721 0.89116 0.93417 0.92928 0.96242 0.92537 0.87205 0.85617 0.74520 0.89867 0.89447 0.84829 0.83566 0.83441 0.83808 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.17 71.98 0.66 -2.90 16 2 C 0.12 3.36 3.17 44.99 0.14 3.50 16 3 C -0.15 -4.71 8.47 71.98 0.61 -4.10 16 4 N -0.58 -22.01 2.39 -802.14 -1.91 -23.92 16 5 C 0.22 10.34 3.66 85.63 0.31 10.66 16 6 C -0.52 -29.07 8.38 25.60 0.21 -28.85 16 7 H 0.04 2.22 7.87 -2.91 -0.02 2.19 16 8 C 0.01 0.58 5.47 84.66 0.46 1.04 16 9 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 10 Si 0.94 43.57 27.47 68.60 1.88 45.46 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 14 C 0.50 18.72 7.74 87.65 0.68 19.40 16 15 O -0.58 -26.81 15.25 -3.04 -0.05 -26.85 16 16 C 0.13 3.64 4.46 85.63 0.38 4.02 16 17 N -0.70 -20.41 5.53 -594.63 -3.29 -23.70 16 18 C 0.66 19.04 8.75 129.79 1.14 20.17 16 19 O -0.59 -18.88 16.13 19.79 0.32 -18.57 16 20 O -0.37 -9.71 10.25 -55.49 -0.57 -10.28 16 21 C 0.13 2.64 5.60 71.24 0.40 3.04 16 22 C -0.12 -2.22 5.52 -19.86 -0.11 -2.33 16 23 C -0.10 -1.73 9.70 22.27 0.22 -1.51 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.11 -1.42 10.05 22.27 0.22 -1.20 16 26 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 27 C -0.11 -1.87 9.70 22.27 0.22 -1.65 16 28 H 0.05 1.29 6.66 -2.39 -0.02 1.27 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 2.42 5.77 -2.39 -0.01 2.40 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.80 6.92 -2.39 -0.02 1.78 16 35 H 0.05 2.25 5.48 -2.39 -0.01 2.23 16 36 H 0.02 0.97 6.85 -2.39 -0.02 0.95 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.11 2.90 7.79 -2.39 -0.02 2.88 16 39 H 0.13 2.84 7.79 -2.39 -0.02 2.82 16 40 H 0.42 12.89 7.55 -92.70 -0.70 12.19 16 41 H 0.08 1.65 8.08 -2.38 -0.02 1.63 16 42 H 0.09 1.66 8.08 -2.39 -0.02 1.64 16 43 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 44 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -76.32 391.69 2.90 -73.42 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.23 Total: 26.93 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 5.99 Total: 16.10 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -4.90 Total: -106.21 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.30 Total: -55.70 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.46 kcal Total: -76.32 2.90 -73.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490914120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.866 kcal (2) G-P(sol) polarization free energy of solvation -76.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds