Wall clock time and date at job start Tue Mar 31 2020 17:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47462 * 2 1 4 4 C 1.53005 * 109.47075 * 240.00032 * 2 1 3 5 5 O 1.45201 * 109.47134 * 120.00386 * 2 1 3 6 6 C 1.34633 * 117.00254 * 59.99732 * 5 2 1 7 7 O 1.21513 * 119.99567 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00099 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99781 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47104 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99864 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00269 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00166 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47459 * 179.97438 * 13 12 10 15 15 C 1.38629 * 119.75027 * 269.72930 * 14 13 12 16 16 C 1.37616 * 120.24726 * 179.71859 * 15 14 13 17 17 C 1.40713 * 119.74816 * 0.56746 * 16 15 14 18 18 C 1.41394 * 120.25067 * 179.67957 * 17 16 15 19 19 H 1.07997 * 120.00652 * 204.40025 * 18 17 16 20 20 C 1.39949 * 119.99607 * 24.40527 * 18 17 16 21 21 N 1.30829 * 120.00062 * 17.85475 * 20 18 17 22 22 Si 1.86798 * 120.00043 * 197.85528 * 20 18 17 23 23 H 1.48500 * 109.46985 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47140 * 119.99988 * 22 20 18 25 25 H 1.48498 * 109.47251 * 239.99840 * 22 20 18 26 26 C 1.40718 * 119.50848 * 359.70557 * 17 16 15 27 27 C 1.37619 * 119.74534 * 0.02562 * 26 17 16 28 28 H 1.09007 * 109.46446 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47436 * 59.99419 * 1 2 3 30 30 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47407 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47264 * 300.00129 * 3 2 1 33 33 H 1.09001 * 109.47372 * 59.99997 * 3 2 1 34 34 H 1.08999 * 109.46983 * 300.00149 * 4 2 1 35 35 H 1.08996 * 109.46540 * 60.00001 * 4 2 1 36 36 H 1.09002 * 109.47104 * 180.02562 * 4 2 1 37 37 H 0.97000 * 119.99623 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.47105 * 60.00024 * 9 8 6 39 39 H 1.08996 * 109.47367 * 299.99757 * 9 8 6 40 40 H 0.97000 * 119.99922 * 359.97438 * 12 10 9 41 41 H 1.09005 * 109.46964 * 59.99422 * 13 12 10 42 42 H 1.09001 * 109.47156 * 300.00127 * 13 12 10 43 43 H 1.08005 * 119.87755 * 359.97064 * 15 14 13 44 44 H 1.08008 * 120.12622 * 180.27959 * 16 15 14 45 45 H 0.96994 * 119.99970 * 179.97438 * 21 20 18 46 46 H 1.07995 * 120.12697 * 179.97438 * 26 17 16 47 47 H 1.08000 * 119.87543 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5094 0.5039 8 7 2.0672 -2.6655 2.4171 9 6 1.6730 -4.0666 2.5835 10 6 2.2642 -4.6065 3.8603 11 8 2.9471 -3.8911 4.5623 12 7 2.0341 -5.8842 4.2220 13 6 2.6083 -6.4089 5.4635 14 6 2.2031 -7.8502 5.6347 15 6 1.0382 -8.1605 6.3193 16 6 0.6554 -9.4730 6.4767 17 6 1.4575 -10.5022 5.9500 18 6 1.0778 -11.8546 6.1115 19 1 1.8256 -12.6331 6.0791 20 6 -0.2673 -12.1844 6.3131 21 7 -1.2044 -11.3227 6.0116 22 14 -0.7246 -13.8549 7.0129 23 1 0.5101 -14.6392 7.2687 24 1 -1.4669 -13.6719 8.2860 25 1 -1.5806 -14.5812 6.0408 26 6 2.6407 -10.1756 5.2619 27 6 3.0011 -8.8560 5.1117 28 1 -0.3632 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 2.6262 -2.2364 3.0836 38 1 2.0395 -4.6500 1.7388 39 1 0.5862 -4.1355 2.6285 40 1 1.4876 -6.4563 3.6608 41 1 2.2416 -5.8258 6.3083 42 1 3.6952 -6.3395 5.4188 43 1 0.4268 -7.3692 6.7272 44 1 -0.2548 -9.7124 7.0066 45 1 -2.1366 -11.5514 6.1510 46 1 3.2640 -10.9575 4.8540 47 1 3.9085 -8.6029 4.5835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496577812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:51 Heat of formation + Delta-G solvation = -112.420679 kcal Electronic energy + Delta-G solvation = -27367.007940 eV Core-core repulsion = 23321.105190 eV Total energy + Delta-G solvation = -4045.902750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99571 -39.68982 -37.84416 -37.39511 -35.05367 -34.66313 -34.01115 -33.53119 -30.63037 -29.43372 -28.46648 -27.70338 -27.64749 -26.47685 -23.75714 -22.42152 -21.13965 -20.58949 -20.26063 -20.13383 -18.64322 -17.44476 -16.98336 -16.62871 -16.56414 -16.06552 -15.56521 -15.37618 -14.92329 -14.66317 -14.61817 -14.12997 -13.96076 -13.77723 -13.62757 -13.11807 -13.09644 -12.78748 -12.58289 -12.44489 -12.18237 -12.17736 -12.09634 -12.00331 -11.75180 -11.68007 -11.58328 -11.21676 -11.08562 -10.79922 -10.61738 -10.50113 -10.28247 -10.02590 -9.73330 -9.54300 -9.45296 -9.27873 -8.83239 -7.63149 -7.51210 -6.92106 -4.51587 1.86138 2.51536 2.57131 2.67944 2.92920 2.98052 3.00561 3.05233 3.49643 3.82058 3.97920 4.42470 4.45955 4.47080 4.61232 4.76720 5.13161 5.14887 5.17040 5.24761 5.35907 5.39580 5.48987 5.54149 5.57430 5.68721 5.70828 5.81553 5.88406 6.01565 6.12960 6.15709 6.20436 6.28077 6.33231 6.63418 6.81801 6.92805 7.12430 7.20850 7.24275 7.45749 7.57113 7.75936 7.90829 7.95144 8.13887 8.18921 8.23994 8.48872 8.73792 8.81149 10.01785 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.001712 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.039195 B =16346.729209 C =16894.835860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.654 3.346 7 O -0.570 6.570 8 N -0.698 5.698 9 C 0.116 3.884 10 C 0.502 3.498 11 O -0.549 6.549 12 N -0.709 5.709 13 C 0.185 3.815 14 C -0.250 4.250 15 C -0.080 4.080 16 C -0.169 4.169 17 C 0.116 3.884 18 C -0.456 4.456 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.786 5.786 22 Si 0.909 3.091 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.230 4.230 27 C -0.069 4.069 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.417 0.583 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.405 0.595 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.119 0.881 45 H 0.282 0.718 46 H 0.093 0.907 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 17.741 -9.728 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.407 3.593 7 O -0.459 6.459 8 N -0.360 5.360 9 C -0.010 4.010 10 C 0.287 3.713 11 O -0.428 6.428 12 N -0.359 5.359 13 C 0.064 3.936 14 C -0.252 4.252 15 C -0.099 4.099 16 C -0.189 4.189 17 C 0.114 3.886 18 C -0.485 4.485 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.411 5.411 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.249 4.249 27 C -0.087 4.087 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.256 0.744 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.240 0.760 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.137 0.863 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.060 18.060 -9.671 20.590 hybrid contribution -0.434 -0.909 0.216 1.030 sum 1.627 17.151 -9.455 19.652 Atomic orbital electron populations 1.22524 0.93916 1.05185 1.02496 1.22091 0.94445 0.91515 0.82065 1.21862 1.02306 0.92503 1.03130 1.22524 1.01599 1.03581 0.96404 1.86310 1.71520 1.23411 1.46494 1.17912 0.78846 0.80607 0.81972 1.90911 1.41173 1.70479 1.43352 1.44291 1.55829 1.11686 1.24237 1.21059 1.01648 0.81094 0.97210 1.20388 0.81189 0.82921 0.86816 1.90684 1.39918 1.57871 1.54374 1.46482 1.52451 1.11148 1.25829 1.20005 0.96968 0.92208 0.84431 1.18948 1.00698 0.91884 1.13624 1.20558 0.94913 0.96087 0.98381 1.21314 1.02049 0.91290 1.04211 1.17690 0.90295 0.93465 0.87191 1.19711 0.92898 0.93284 1.42630 0.90173 1.25965 0.96372 0.99296 0.92729 1.69820 1.01718 1.36036 1.33481 0.86243 0.79479 0.81610 0.79358 1.18279 1.19578 1.19873 1.20978 1.01559 0.94561 1.07816 1.20408 0.97126 0.93086 0.98129 0.92133 0.91127 0.89276 0.91429 0.90126 0.91421 0.89289 0.91128 0.92138 0.74442 0.88018 0.87983 0.75978 0.92109 0.92151 0.89361 0.86349 0.90680 0.88860 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.14 1.24 1.13 -90.62 -0.10 1.14 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 4 C -0.18 -1.63 8.37 37.16 0.31 -1.31 16 5 O -0.36 -4.15 9.94 -40.31 -0.40 -4.56 16 6 C 0.65 8.25 8.06 54.06 0.44 8.68 16 7 O -0.57 -8.03 11.88 -19.28 -0.23 -8.26 16 8 N -0.70 -8.28 5.53 -66.47 -0.37 -8.65 16 9 C 0.12 1.31 6.15 -5.19 -0.03 1.28 16 10 C 0.50 6.91 7.90 -10.99 -0.09 6.83 16 11 O -0.55 -9.16 15.67 5.55 0.09 -9.08 16 12 N -0.71 -10.10 5.55 -61.47 -0.34 -10.44 16 13 C 0.19 3.08 5.79 -5.20 -0.03 3.05 16 14 C -0.25 -4.89 5.27 -104.33 -0.55 -5.44 16 15 C -0.08 -1.71 9.67 -39.66 -0.38 -2.10 16 16 C -0.17 -4.10 8.70 -38.87 -0.34 -4.44 16 17 C 0.12 2.91 5.57 -106.82 -0.60 2.32 16 18 C -0.46 -11.46 9.05 -37.74 -0.34 -11.81 16 19 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 20 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 21 N -0.79 -19.20 10.95 55.55 0.61 -18.59 16 22 Si 0.91 17.72 29.60 -169.99 -5.03 12.69 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 C -0.23 -5.25 9.80 -38.87 -0.38 -5.63 16 27 C -0.07 -1.40 9.67 -39.66 -0.38 -1.78 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.42 4.94 7.55 -40.82 -0.31 4.63 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.41 5.33 8.46 -40.82 -0.35 4.98 16 41 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 42 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 43 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.12 2.99 6.16 -52.48 -0.32 2.67 16 45 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 46 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 47 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -28.04 391.67 -8.75 -36.79 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -7.05 Total: 13.60 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.93 Total: -9.42 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.10 Total: -37.68 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.54 Total: -21.89 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.04 -8.75 -36.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496577812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.630 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds